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2025 Journal Article Is the biogeography of the mucosa-associated microbiota a key factor affecting primary sclerosing cholangitis disease course and treatment?Lim, Yenkai, Kang, Seungha, Shah, Ayesha, Holtmann, Gerald and Morrison, Mark (2025). Is the biogeography of the mucosa-associated microbiota a key factor affecting primary sclerosing cholangitis disease course and treatment?. Gut, 74 (4), 692-693. doi: 10.1136/gutjnl-2024-334069 |
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2024 Conference Publication Simethicone suppresses the growth of microbes cultured from the human duodenal mucosaFairlie, Thomas, Shah, Ayesha, Lim, Yenkai, Teh, Jing-Jie, Schooth, Lauren, Morrison, Mark and Holtmann, Gerald (2024). Simethicone suppresses the growth of microbes cultured from the human duodenal mucosa. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2024, Adelaide, SA Australia, 14-16 September 2024. Richmond, VIC Australia: John Wiley & Sons. |
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2024 Journal Article Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspringDing, Lu, Weger, Benjamin D., Liu, Jieying, Zhou, Liyuan, Lim, Yenkai, Wang, Dongmei, Xie, Ziyan, Liu, Jing, Ren, Jing, Zheng, Jia, Zhang, Qian, Yu, Miao, Weger, Meltem, Morrison, Mark, Xiao, Xinhua and Gachon, Frédéric (2024). Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring. iScience, 27 (7) 110343, 110343. doi: 10.1016/j.isci.2024.110343 |
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2024 Conference Publication The Duodenal Mucosa-associated Microbiota Of Patients With A Disorder Of Gut-brain Interaction Can Be Differentiated By Rome IV CriteriaSchooth, Lauren F., Kang, Seungha, Fairlie, Thomas, Lim, Yenkai, Teh, Jing Jie, Hoedt, Emily C., Keely, Simon, Shah, Ayesha, Holtmann, Gerald J. and Morrison, Mark (2024). The Duodenal Mucosa-associated Microbiota Of Patients With A Disorder Of Gut-brain Interaction Can Be Differentiated By Rome IV Criteria. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02266-2 |
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2024 Conference Publication Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal MucosaFairlie, Thomas, Shah, Ayesha, Lim, Yenkai, Teh, Jing Jie, Schooth, Lauren F., Morrison, Mark and Holtmann, Gerald J. (2024). Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal Mucosa. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02466-1 |
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2024 Conference Publication A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional DyspepsiaBurns, Grace L., Wark, Jasmine A., Hoedt, Emily C., Minahan, Kyra, Sherwin, Simonne, Bruce, Jessica K., Lim, Yenkai, Teh, Jing Jie, Jamaluddin, M. Fairuz, Soh, Wai Sinn, Caban, Shandelle, Almazi, Juhura, Woldu, Ameha S., Dun, Matthew D., Potter, Michael D., Shanahan, Erin R., Holtmann, Gerald J., Walker, Marjorie M., Morrison, Mark, Talley, Nicholas J. and Keely, Simon (2024). A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional Dyspepsia. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02260-1 |
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2023 Conference Publication The interplay of IL-23, probiotic and pathobiont bacteria in the pathogenesis of ileitis and spondyloarthritis in the SKG mouse modelBergot, Anne-Sophie, Cai, Benjamin, Giri, Rabina, Cameron, Amy, Duggan, Emily, Lim, Kai, Rehaume, Linda, Morrison, Mark, Begun, Jakob and Thomas, Ranjeny (2023). The interplay of IL-23, probiotic and pathobiont bacteria in the pathogenesis of ileitis and spondyloarthritis in the SKG mouse model. 2023 Australian Rheumatology Association (ARA) 63rd Annual Scientific Meeting, Hobart, TAS, Australia, 6–9 May 2023. Hoboken, NJ, United States: Wiley. |
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2022 Conference Publication Strain-level functional and phenotypic resolution of the duodenal mucosa-associated microbiota in functional dyspepsia and healthy control subjects via a novel ex vivo combination of microbe culture and metagenomic sequencingSchooth, Lauren F., Ahmed, Ahmed Sid, Kang, Seungha, Shah, Ayesha, Fairlie, Thomas, Teh, Jing Jie, Lim, Yenkai, Hoedt, Emily C., Talley, Nicholas J., Keely, Simon, Holtmann, Gerald J. and Morrison, Mark (2022). Strain-level functional and phenotypic resolution of the duodenal mucosa-associated microbiota in functional dyspepsia and healthy control subjects via a novel ex vivo combination of microbe culture and metagenomic sequencing. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)61208-3 |
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2021 Journal Article The salivary metatranscriptome as an accurate diagnostic indicator of oral cancerBanavar, Guruduth, Ogundijo, Oyetunji, Toma, Ryan, Rajagopal, Sathyapriya, Lim, Yen Kai, Tang, Kai, Camacho, Francine, Torres, Pedro J., Gline, Stephanie, Parks, Matthew, Kenny, Liz, Perlina, Ally, Tily, Hal, Dimitrova, Nevenka, Amar, Salomon, Vuyisich, Momchilo and Punyadeera, Chamindie (2021). The salivary metatranscriptome as an accurate diagnostic indicator of oral cancer. npj Genomic Medicine, 6 (1) 105, 105. doi: 10.1038/s41525-021-00257-x |
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2021 Journal Article Chemoradiation therapy changes oral microbiome and metabolomic profiles in patients with oral cavity cancer and oropharyngeal cancerLim, Yenkai, Tang, Kai Dun, Karpe, Avinash V., Beale, David J., Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2021). Chemoradiation therapy changes oral microbiome and metabolomic profiles in patients with oral cavity cancer and oropharyngeal cancer. Head and Neck, 43 (5), 1521-1534. doi: 10.1002/hed.26619 |
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2021 Other Outputs Culture studies and genomic characterization of Soho Flordis International (SFI) Research Australia probiotic bacterial strains (Phase-II)Lim, Yenkai (2021). Culture studies and genomic characterization of Soho Flordis International (SFI) Research Australia probiotic bacterial strains (Phase-II). N/A: N/A. |
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2020 Other Outputs Culture studies and genomic characterization of Soho Flordis International (SFI) Research Australia probiotic bacterial strains (Phase-I)Lim, Yenkai (2020). Culture studies and genomic characterization of Soho Flordis International (SFI) Research Australia probiotic bacterial strains (Phase-I). N/A: N/A. |
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2020 Other Outputs The salivary metatranscriptome as an accurate diagnostic indicator of oral cancerBanavar, Guruduth, Ogundijo, Oyetunji, Toma, Ryan, Rajagopal, Sathyapriya, Lim, Yenkai, Tang, Kai Dun, Camacho, Francine, Torres, Pedro, Gline, Stephanie, Parks, Matthew, Kenny, Liz, Dimitrova, Nevenka, Perlina, Ally, Tily, Hal, Amar, Salomon, Vuyisich, Momchilo and Punyadeera, Chamindie (2020). The salivary metatranscriptome as an accurate diagnostic indicator of oral cancer. doi: 10.21203/rs.3.rs-55052/v1 |
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2020 Journal Article The use of three-dimensional DNA fluorescent in situ hybridization (3D DNA FISH) for the detection of Anaplastic Lymphoma Kinase (ALK) in Non-Small Cell Lung Cancer (NSCLC) circulating tumor cellsKulasinghe, Arutha, Lim, Yenkai, Kapeleris, Joanna, Warkiani, Majid, O'Byrne, Ken and Punyadeera, Chamindie (2020). The use of three-dimensional DNA fluorescent in situ hybridization (3D DNA FISH) for the detection of Anaplastic Lymphoma Kinase (ALK) in Non-Small Cell Lung Cancer (NSCLC) circulating tumor cells. Cells, 9 (6) 1465, 1-8. doi: 10.3390/cells9061465 |
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2020 Journal Article Chronic high-fat diet induces early Barrett’s esophagus in mice through lipidome remodelingMolendijk, Jeffrey, Nguyen, Thi-My-Tam, Brown, Ian, Mohamed, Ahmed, Lim, Yenkai, Barclay, Johanna, Hodson, Mark P., Hennessy, Thomas P., Krause, Lutz, Morrison, Mark and Hill, Michelle M. (2020). Chronic high-fat diet induces early Barrett’s esophagus in mice through lipidome remodeling. Biomolecules, 10 (5) 776, 776. doi: 10.3390/biom10050776 |
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2018 Journal Article The performance of an oral microbiome biomarker panel in predicting oral cavity and oropharyngeal cancersLim, Yenkai, Fukuma, Naoki, Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2018). The performance of an oral microbiome biomarker panel in predicting oral cavity and oropharyngeal cancers. Frontiers in Cellular and Infection Microbiology, 8 (AUG) 267, 267. doi: 10.3389/fcimb.2018.00267 |
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2018 Journal Article A pilot study to investigate the feasibility of transporting saliva samples at room temperature with MAWI Cell Stabilization bufferLim, Yenkai and Punyadeera, Chamindie (2018). A pilot study to investigate the feasibility of transporting saliva samples at room temperature with MAWI Cell Stabilization buffer. Cogent Biology, 4 (1) 1470895. doi: 10.1080/23312025.2018.1470895 |
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2018 Conference Publication Oral microbiome biomarker panel to detect oral and oropharyngeal cancers in a clinical settingLim, Yenkai, Fukuma, Naoki, Totsika, Makrina, Kenny, Liz, Morrison, Mark and Punyadeera, Chamindie (2018). Oral microbiome biomarker panel to detect oral and oropharyngeal cancers in a clinical setting. Annual Meeting of the American-Association-for-Cancer-Research (AACR), Chicago, IL United States, 14-18 April 2018. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2018-577 |
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2017 Journal Article The saliva microbiome profiles are minimally affected by collection method or DNA extraction protocolsLim, Yenkai, Totsika, Makrina, Morrison, Mark and Punyadeera, Chamindie (2017). The saliva microbiome profiles are minimally affected by collection method or DNA extraction protocols. Scientific Reports, 7 (1) 8523, 8523. doi: 10.1038/s41598-017-07885-3 |
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2017 Journal Article A pilot study into the association between oral health status and human papillomavirus-16 infectionSun, Charles Xiaohang, Bennett, Nigel, Tran, Peter, Tang, Kai Dun, Lim, Yenkai, Frazer, Ian, Samaranayake, Lakshman and Punyadeera, Chamindie (2017). A pilot study into the association between oral health status and human papillomavirus-16 infection. Diagnostics, 7 (1) 11, 11. doi: 10.3390/diagnostics7010011 |
