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2022 Journal Article Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancerUgai, Tomotaka, Väyrynen, Juha P., Lau, Mai Chan, Borowsky, Jennifer, Akimoto, Naohiko, Väyrynen, Sara A., Zhao, Melissa, Zhong, Rong, Haruki, Koichiro, Dias Costa, Andressa, Fujiyoshi, Kenji, Arima, Kota, Wu, Kana, Chan, Andrew T., Cao, Yin, Song, Mingyang, Fuchs, Charles S., Wang, Molin, Lennerz, Jochen K., Ng, Kimmie, Meyerhardt, Jeffrey A., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2022). Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancer. Cancer Immunology, Immunotherapy, 71 (4), 933-942. doi: 10.1007/s00262-021-03056-6 |
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2022 Journal Article Desmoplastic Reaction, Immune Cell Response, and Prognosis in Colorectal CancerAkimoto, Naohiko, Väyrynen, Juha P,, Zhao, Melissa, Ugai, Tomotaka, Fujiyoshi, Kenji, Borowsky, Jennifer, Zhong, Rong, Haruki, Koichiro, Arima, Kota, Lau, Mai Chan, Kishikawa, Junko, Twombly, Tyler S., Takashima, Yasutoshi, Song, Mingyang, Zhang, Xuehong, Wu, Kana, Chan, Andrew T., Meyerhardt, Jeffrey A., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2022). Desmoplastic Reaction, Immune Cell Response, and Prognosis in Colorectal Cancer. Frontiers in Immunology, 13 840198, 1-16. doi: 10.3389/fimmu.2022.840198 |
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2022 Journal Article Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer MicroenvironmentVäyrynen, Juha P., Haruki, Koichiro, Lau, Mai Chan, Väyrynen, Sara A., Ugai, Tomotaka, Akimoto, Naohiko, Zhong, Rong, Zhao, Melissa, Dias Costa, Andressa, Borowsky, Jennifer, Bell, Phoenix, Takashima, Yasutoshi, Fujiyoshi, Kenji, Arima, Kota, Kishikawa, Junko, Shi, Shan-Shan, Twombly, Tyler S., Song, Mingyang, Wu, Kana, Chan, Andrew T., Zhang, Xuehong, Fuchs, Charles S., Meyerhardt, Jeffrey A., Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A. (2022). Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer Microenvironment. Cancer Immunology Research, 10 (2), 215-227. doi: 10.1158/2326-6066.CIR-21-0772 |
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2022 Journal Article Coffee Intake of Colorectal Cancer Patients and Prognosis According to Histopathologic Lymphocytic Reaction and T-Cell InfiltratesUgai, Tomotaka, Haruki, Koichiro, Väyrynen, Juha P., Borowsky, Jennifer, Fujiyoshi, Kenji, Lau, Mai Chan, Akimoto, Naohiko, Zhong, Rong, Kishikawa, Junko, Arima, Kota, Shi, Shan-Shan, Zhao, Melissa, Fuchs, Charles S., Zhang, Xuehong, Giannakis, Marios, Song, Mingyang, Nan, Hongmei, Meyerhardt, Jeffrey A., Wang, Molin, Nowak, Jonathan A. and Ogino, Shuji (2022). Coffee Intake of Colorectal Cancer Patients and Prognosis According to Histopathologic Lymphocytic Reaction and T-Cell Infiltrates. Mayo Clinic Proceedings, 97 (1), 124-133. doi: 10.1016/j.mayocp.2021.09.007 |
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2021 Journal Article Association of Fusobacterium nucleatum with specific T-cell subsets in the colorectal carcinoma microenvironmentBorowsky, Jennifer, Haruki, Koichiro, Lau, Mai Chan, Costa, Andressa Dias, Vayrynen, Juha P., Ugai, Tomotaka, Arima, Kota, Da Silva, Annacarolina, Felt, Kristen D., Zhao, Melissa, Gurjao, Carino, Twombly, Tyler S., Fujiyoshi, Kenji, Vayrynen, Sara A., Hamada, Tsuyoshi, Mima, Kosuke, Bullman, Susan, Harrison, Tabitha A., Phipps, Amanda I., Peters, Ulrike, Ng, Kimmie, Meyerhardt, Jeffrey A., Song, Mingyang, Giovannucci, Edward L., Wu, Kana, Zhang, Xuehong, Freeman, Gordon J., Huttenhower, Curtis, Garrett, Wendy S. ... Ogino, Shuji (2021). Association of Fusobacterium nucleatum with specific T-cell subsets in the colorectal carcinoma microenvironment. Clinical Cancer Research, 27 (10), 2816-2826. doi: 10.1158/1078-0432.CCR-20-4009 |
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2021 Journal Article Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironmentVäyrynen, Juha P, Haruki, Koichiro, Väyrynen, Sara A, Lau, Mai Chan, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Ugai, Tomotaka, Kishikawa, Junko, Akimoto, Naohiko, Zhong, Rong, Shi, Shanshan, Chang, Tzuu-Wang, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Da Silva, Annacarolina, Song, Mingyang, Wu, Kana, Zhang, Xuehong, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2021). Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment. Journal for Immunotherapy of Cancer, 9 (4) e002297, e002297. doi: 10.1136/jitc-2020-002297 |
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2021 Journal Article The prognostic role of macrophage polarization in the colorectal cancer microenvironmentVäyrynen, Juha P, Haruki, Koichiro, Lau, Mai Chan, Väyrynen, Sara A, Zhong, Rong, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Kishikawa, Junko, Gu, Simeng, Aminmozaffari, Saina, Shi, Shanshan, Baba, Yoshifumi, Akimoto, Naohiko, Ugai, Tomotaka, Da Silva, Annacarolina, Guerriero, Jennifer L, Song, Mingyang, Wu, Kana, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2021). The prognostic role of macrophage polarization in the colorectal cancer microenvironment. Cancer Immunology Research, 9 (1), 8-19. doi: 10.1158/2326-6066.CIR-20-0527 |
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2020 Journal Article Prognostic significance of immune cell populations identified by machine learning in colorectal cancer using routine hematoxylin and eosin-stained sectionsVäyrynen, Juha P, Lau, Mai Chan, Haruki, Koichiro, Väyrynen, Sara A, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Kishikawa, Junko, Gu, Simeng, Aminmozaffari, Saina, Shi, Shanshan, Baba, Yoshifumi, Akimoto, Naohiko, Ugai, Tomotaka, Da Silva, Annacarolina, Song, Mingyang, Wu, Kana, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2020). Prognostic significance of immune cell populations identified by machine learning in colorectal cancer using routine hematoxylin and eosin-stained sections. Clinical Cancer Research, 26 (16), 4326-4338. doi: 10.1158/1078-0432.CCR-20-0071 |
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2020 Journal Article Smoking status at diagnosis and colorectal cancer prognosis according to tumor lymphocytic reactionFujiyoshi, Kenji, Chen, Yang, Haruki, Koichiro, Ugai, Tomotaka, Kishikawa, Junko, Hamada, Tsuyoshi, Liu, Li, Arima, Kota, Borowsky, Jennifer, Väyrynen, Juha P, Zhao, Melissa, Lau, Mai Chan, Gu, Simeng, Shi, Shanshan, Akimoto, Naohiko, Twombly, Tyler S, Drew, David A, Song, Mingyang, Chan, Andrew T, Giovannucci, Edward L, Meyerhardt, Jeffrey A, Fuchs, Charles S, Nishihara, Reiko, Lennerz, Jochen K, Giannakis, Marios, Nowak, Jonathan A, Zhang, Xuehong, Wu, Kana and Ogino, Shuji (2020). Smoking status at diagnosis and colorectal cancer prognosis according to tumor lymphocytic reaction. JNCI Cancer Spectrum, 4 (5). doi: 10.1093/jncics/pkaa040 |
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2020 Journal Article Tumour budding, poorly differentiated clusters, and T-cell response in colorectal cancerFujiyoshi, Kenji, Väyrynen, Juha P, Borowsky, Jennifer, Papke, David J, Arima, Kota, Haruki, Koichiro, Kishikawa, Junko, Akimoto, Naohiko, Ugai, Tomotaka, Lau, Mai Chan, Gu, Simeng, Shi, Shanshan, Zhao, Melissa, Da Silva, Annacarolina Fabiana Lucia, Twombly, Tyler S, Nan, Hongmei, Meyerhardt, Jeffrey A, Song, Mingyang, Zhang, Xuehong, Wu, Kana, Chan, Andrew T, Fuchs, Charles S, Lennerz, Jochen K, Giannakis, Marios, Nowak, Jonathan A and Ogino, Shuji (2020). Tumour budding, poorly differentiated clusters, and T-cell response in colorectal cancer. EBioMedicine, 57 102860, 102860. doi: 10.1016/j.ebiom.2020.102860 |
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2020 Journal Article Immune checkpoint inhibitor-associated celiac diseaseBadran, Yousef R., Shih, Angela, Leet, Donna, Mooradian, Meghan J., Coromilas, Alexandra, Chen, Jonathan, Kem, Marina, Zheng, Hui, Borowsky, Jennifer, Misdraji, Joseph, Mino-Kenudson, Mari and Dougan, Michael (2020). Immune checkpoint inhibitor-associated celiac disease. Journal for Immunotherapy of Cancer, 8 (1) e000958. doi: 10.1136/jitc-2020-000958 |
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2020 Journal Article Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancerHaruki, Koichiro, Kosumi, Keisuke, Hamada, Tsuyoshi, Twombly, Tyler S, Väyrynen, Juha P, Kim, Sun A, Masugi, Yohei, Qian, Zhi Rong, Mima, Kosuke, Baba, Yoshifumi, da Silva, Annacarolina, Borowsky, Jennifer, Arima, Kota, Fujiyoshi, Kenji, Lau, Mai Chan, Li, Peilong, Guo, Chunguang, Chen, Yang, Song, Mingyang, Nowak, Jonathan A, Nishihara, Reiko, Yanaga, Katsuhiko, Zhang, Xuehong, Wu, Kana, Bullman, Susan, Garrett, Wendy S, Huttenhower, Curtis, Meyerhardt, Jeffrey A, Giannakis, Marios ... Ogino, Shuji (2020). Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer. Journal of Pathology, 250 (4), 397-408. doi: 10.1002/path.5381 |
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2018 Journal Article The role of APC in WNT pathway activation in serrated neoplasiaBorowsky, Jennifer, Dumenil, Troy, Bettington, Mark, Pearson, Sally-Ann, Bond, Catherine, Fennell, Lochlan, Liu, Cheng, McKeone, Diane, Rosty, Christophe, Brown, Ian, Walker, Neal, Leggett, Barbara and Whitehall, Vicki (2018). The role of APC in WNT pathway activation in serrated neoplasia. Modern Pathology, 31 (3), 495-504. doi: 10.1038/modpathol.2017.150 |
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2017 Journal Article RNF43 is mutated less frequently in Lynch Syndrome compared with sporadic microsatellite unstable colorectal cancersFennell, Lochlan J. , Clendenning, Mark, McKeone, Diane M. , Jamieson, Saara H., Balachandran, Samanthy, Borowsky, Jennifer, Liu, John, Kawamata, Futoshi, Bond, Catherine E., Rosty, Christophe, Burge, Matthew E., Buchanan, Daniel D., Leggett, Barbara A. and Whitehall, Vicki L. J. (2017). RNF43 is mutated less frequently in Lynch Syndrome compared with sporadic microsatellite unstable colorectal cancers. Familial Cancer, 17 (1), 1-7. doi: 10.1007/s10689-017-0003-0 |
