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2025 Journal Article Utility of random neosquamous and cardia biopsy specimens during surveillance after dysplastic Barrett eradication: a prospective single-center studyYadav, Aman, Gupta, Sunil, Karim, Shwan, Banh, Xuan, Borowsky, Jennifer, Cooper, Caroline, Hughes, Ian, Hourigan, Luke F. and Huelsen, Alexander (2025). Utility of random neosquamous and cardia biopsy specimens during surveillance after dysplastic Barrett eradication: a prospective single-center study. Gastrointestinal Endoscopy. doi: 10.1016/j.gie.2025.08.033 |
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2025 Conference Publication Tumor bacteria, tumor-infiltrating T cells, and colorectal cancer survival outcomesUgai, Tomotaka, Borowsky, Jennifer, Zhong, Yuxue, Ugai, Satoko, Lau, Mai Chan, Arima, Kota, Haruki, Koichiro, Giannakis, Marios, Nowak, Jonathan and Ogino, Shuji (2025). Tumor bacteria, tumor-infiltrating T cells, and colorectal cancer survival outcomes. Annual Meeting of the American Association for Cancer Research (AACR), Chicago, IL United States, 25-30 April 2025. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2025-3597 |
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2025 Journal Article Inflammatory polypoid mass caused by sevelamer and sodium polystyrene crystalsHuang, Andrea, Borowsky, Jennifer, Ketheson, Prabha, Taylor, Andrew and Hamarneh, Zaki (2025). Inflammatory polypoid mass caused by sevelamer and sodium polystyrene crystals. Gastrointestinal Endoscopy, 101 (3), 685-686. doi: 10.1016/j.gie.2024.10.048 |
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2025 Journal Article Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironmentLau, Mai Chan, Borowsky, Jennifer, Vayrynen, Juha P., Haruki, Koichiro, Zhao, Melissa, Dias Costa, Andressa, Gu, Simeng, da Silva, Annacarolina, Ugai, Tomotaka, Arima, Kota, Nguyen, Minh N., Takashima, Yasutoshi, Yeong, Joe, Tai, David, Hamada, Tsuyoshi, Lennerz, Jochen K., Fuchs, Charles S., Wu, Catherine J., Meyerhardt, Jeffrey A., Ogino, Shuji and Nowak, Jonathan A. (2025). Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment. PLoS Computational Biology, 21 (2) e1012707, 1-32. doi: 10.1371/journal.pcbi.1012707 |
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2025 Journal Article Enterocolitis with rectal and ileal stenosis: a rare presentation of metastatic urothelial carcinomaSmith, Nicholas, Borowsky, Jennifer and Taylor, Andrew (2025). Enterocolitis with rectal and ileal stenosis: a rare presentation of metastatic urothelial carcinoma. BMJ Case Reports, 18 (1) e261930, 1-3. doi: 10.1136/bcr-2024-261930 |
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2024 Conference Publication Enterocolitis with rectal and ileal stenosis: a rare presentation of metastatic urothelial carcinomaSmith, Nicholas, Taylor, Andrew and Borowsky, Jennifer (2024). Enterocolitis with rectal and ileal stenosis: a rare presentation of metastatic urothelial carcinoma. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW), Adelaide, SA, Australia, 14 - 16 September 2024. Richmond, VIC, Australia: John Wiley & Sons. doi: 10.1111/jgh.16704 |
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2024 Conference Publication Beyond the biopsy: unraveling a rare cause of cholestasisSmith, Nicholas, Arjun, Gandhi, Saad, Nivene, Borowsky, Jennifer and Thomas, James (2024). Beyond the biopsy: unraveling a rare cause of cholestasis. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW), Adelaide, SA, Australia, 14 - 16 September 2024. Richmond, VIC, Australia: John Wiley & Sons. doi: 10.1111/jgh.16700 |
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2024 Journal Article Expanding the diagnostic toolkit in chronic cholestasisSmith, Nicholas, Borowsky, Jennifer and Thomas, James A. (2024). Expanding the diagnostic toolkit in chronic cholestasis. Gastroenterology, 168 (4), 655-658. doi: 10.1053/j.gastro.2024.08.005 |
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2024 Conference Publication Temporal heterogeneity in HER2 status of gastric/ gastro-oesophageal adenocarcinomaBorowsky, J. and Cooper, C. (2024). Temporal heterogeneity in HER2 status of gastric/ gastro-oesophageal adenocarcinoma. 48th Annual Scientific Meeting of the Australasian Division of the IAP, Brisbane, QLD, Australia, 31 May - 2 June 2024. Oxford, United Kingdom: John Wiley & Sons. doi: 10.1111/his.15253 |
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2023 Other Outputs Morphological and molecular characterisation of colorectal adenomas and carcinomasBorowsky, Jennifer (2023). Morphological and molecular characterisation of colorectal adenomas and carcinomas. PhD Thesis, School of Medicine, The University of Queensland. doi: 10.14264/b16f51b |
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2023 Conference Publication Determining if osteopontin is an immune checkpoint of KRAS mutant colorectal cancerNowlan, B., Borowsky, J., Dumenil, T., Tria, S., Wright, J., Fennell, L., Bond, C., McKeone, D., Hartel, G., Woods, S., Leggett, B. and Whitehall, V. (2023). Determining if osteopontin is an immune checkpoint of KRAS mutant colorectal cancer. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2023, Brisbane, QLD Australia, 2-5 September 2023. Richmond, VIC Australia: John Wiley & Sons. |
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2023 Conference Publication KRAS mutant bowel cancers segregate into two distinct subgroupsBorowsky, J., Su, C., Fennell, L., Burge, M., Liu, J., Costa, A. Dias, Ogino, S., Mckeone, D., Olsen, K., Badshah, J., Bond, C., Nowlan, B., Tria, S., Laki, V., Walker, N., Brown, I., Bettington, M., Leggett, B. and Whitehall, V. (2023). KRAS mutant bowel cancers segregate into two distinct subgroups. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2023, Brisbane, QLD Australia, 2-5 September 2023. Hoboken, NJ United States: Wiley. |
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2023 Journal Article Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic dataZhao, Melissa, Lau, Mai Chan, Haruki, Koichiro, Väyrynen, Juha P., Gurjao, Carino, Väyrynen, Sara A., Dias Costa, Andressa, Borowsky, Jennifer, Fujiyoshi, Kenji, Arima, Kota, Hamada, Tsuyoshi, Lennerz, Jochen K., Fuchs, Charles S., Nishihara, Reiko, Chan, Andrew T., Ng, Kimmie, Zhang, Xuehong, Meyerhardt, Jeffrey A., Song, Mingyang, Wang, Molin, Giannakis, Marios, Nowak, Jonathan A., Yu, Kun-Hsing, Ugai, Tomotaka and Ogino, Shuji (2023). Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic data. npj Precision Oncology, 7 (1) 57. doi: 10.1038/s41698-023-00406-8 |
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2022 Journal Article Ileal pouch adenocarcinoma following ileal pouch-anal anastomosis in a transplant recipientWilliams, Thomas, Kaazan, Patricia, Slack, Timothy, Tallis, Caroline, Borowsky, Jennifer and Martin, Neal (2022). Ileal pouch adenocarcinoma following ileal pouch-anal anastomosis in a transplant recipient. Internal medicine journal, 52 (8), 1448-1449. doi: 10.1111/imj.15876 |
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2022 Conference Publication Body mass index throughout adulthood and incidence of colorectal cancer subclassified by T cell, macrophage, and myeloid cell infiltrates in cancer tissueUgai, Tomotaka, Vayrynen, Juha P., Takashima, Yasutoshi, Kahaki, Seyed Mostafa Mousavi, Langworthy, Benjamin, Haruki, Koichiro, Akimoto, Naohiko, Lau, Mai Chan, Zhong, Rong, Vayrynen, Sara A., Zhao, Melissa, Costa, Andressa Dias, Borowsky, Jennifer, Guerriero, Jennifer L., Zhang, Xuehong, Chan, Andrew T., Wang, Molin, Giannakis, Marios, Meyerhardt, Jeffrey A., Giovannucci, Edward L., Nowak, Jonathan A. and Ogino, Shuji (2022). Body mass index throughout adulthood and incidence of colorectal cancer subclassified by T cell, macrophage, and myeloid cell infiltrates in cancer tissue. Annual Meeting of the American Association for Cancer Research (AACR), New Orleans, LA United States, 8-13 April 2022. Philadelphia, PA United States: American Association for Cancer Research. |
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2022 Journal Article Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancerUgai, Tomotaka, Väyrynen, Juha P., Lau, Mai Chan, Borowsky, Jennifer, Akimoto, Naohiko, Väyrynen, Sara A., Zhao, Melissa, Zhong, Rong, Haruki, Koichiro, Dias Costa, Andressa, Fujiyoshi, Kenji, Arima, Kota, Wu, Kana, Chan, Andrew T., Cao, Yin, Song, Mingyang, Fuchs, Charles S., Wang, Molin, Lennerz, Jochen K., Ng, Kimmie, Meyerhardt, Jeffrey A., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2022). Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancer. Cancer Immunology, Immunotherapy, 71 (4), 933-942. doi: 10.1007/s00262-021-03056-6 |
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2022 Journal Article Desmoplastic Reaction, Immune Cell Response, and Prognosis in Colorectal CancerAkimoto, Naohiko, Väyrynen, Juha P,, Zhao, Melissa, Ugai, Tomotaka, Fujiyoshi, Kenji, Borowsky, Jennifer, Zhong, Rong, Haruki, Koichiro, Arima, Kota, Lau, Mai Chan, Kishikawa, Junko, Twombly, Tyler S., Takashima, Yasutoshi, Song, Mingyang, Zhang, Xuehong, Wu, Kana, Chan, Andrew T., Meyerhardt, Jeffrey A., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2022). Desmoplastic Reaction, Immune Cell Response, and Prognosis in Colorectal Cancer. Frontiers in Immunology, 13 840198, 1-16. doi: 10.3389/fimmu.2022.840198 |
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2022 Journal Article Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer MicroenvironmentVäyrynen, Juha P., Haruki, Koichiro, Lau, Mai Chan, Väyrynen, Sara A., Ugai, Tomotaka, Akimoto, Naohiko, Zhong, Rong, Zhao, Melissa, Dias Costa, Andressa, Borowsky, Jennifer, Bell, Phoenix, Takashima, Yasutoshi, Fujiyoshi, Kenji, Arima, Kota, Kishikawa, Junko, Shi, Shan-Shan, Twombly, Tyler S., Song, Mingyang, Wu, Kana, Chan, Andrew T., Zhang, Xuehong, Fuchs, Charles S., Meyerhardt, Jeffrey A., Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A. (2022). Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer Microenvironment. Cancer Immunology Research, 10 (2), 215-227. doi: 10.1158/2326-6066.CIR-21-0772 |
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2022 Journal Article Coffee Intake of Colorectal Cancer Patients and Prognosis According to Histopathologic Lymphocytic Reaction and T-Cell InfiltratesUgai, Tomotaka, Haruki, Koichiro, Väyrynen, Juha P., Borowsky, Jennifer, Fujiyoshi, Kenji, Lau, Mai Chan, Akimoto, Naohiko, Zhong, Rong, Kishikawa, Junko, Arima, Kota, Shi, Shan-Shan, Zhao, Melissa, Fuchs, Charles S., Zhang, Xuehong, Giannakis, Marios, Song, Mingyang, Nan, Hongmei, Meyerhardt, Jeffrey A., Wang, Molin, Nowak, Jonathan A. and Ogino, Shuji (2022). Coffee Intake of Colorectal Cancer Patients and Prognosis According to Histopathologic Lymphocytic Reaction and T-Cell Infiltrates. Mayo Clinic Proceedings, 97 (1), 124-133. doi: 10.1016/j.mayocp.2021.09.007 |
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2021 Conference Publication Seattle protocol biopsies of normal neosquamous epithelium in patients with eradicated Barrett's epithelium with prior dysplasia have minimal value: A prospective single-center studyHuelsen, A., Karim, S., Banh, X., Borowsky, J., Cooper, C. and Hourigan, L. (2021). Seattle protocol biopsies of normal neosquamous epithelium in patients with eradicated Barrett's epithelium with prior dysplasia have minimal value: A prospective single-center study. GESA AGW 2021, Virtual, 4 - 12 September 2021. Richmond, VIC, Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/jgh.15608 |
