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2021 Journal Article Smoking and incidence of colorectal cancer subclassified by tumor-associated macrophage infiltratesUgai, Tomotaka, Väyrynen, Juha P, Haruki, Koichiro, Akimoto, Naohiko, Lau, Mai Chan, Zhong, Rong, Kishikawa, Junko, Väyrynen, Sara A, Zhao, Melissa, Fujiyoshi, Kenji, Costa, Andressa Dias, Borowsky, Jennifer, Arima, Kota, Guerriero, Jennifer L, Fuchs, Charles S, Zhang, Xuehong, Song, Mingyang, Wang, Molin, Giannakis, Marios, Meyerhardt, Jeffrey A, Nowak, Jonathan A and Ogino, Shuji (2021). Smoking and incidence of colorectal cancer subclassified by tumor-associated macrophage infiltrates. Journal of the National Cancer Institute, 114 (1), 68-77. doi: 10.1093/jnci/djab142 |
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2021 Conference Publication Smoking and colorectal cancer Iincidence by tumor microenvironment in cancer tissueUgai, Tomotaka, Vayrynen, Juha P., Haruki, Koichiro, Akimoto, Naohiko, Lau, Mai Chan, Zhong, Rong, Vayrynen, Sara A., Zhao, Melissa, Costa, Andressa Dias, Borowsky, Jennifer, Guerriero, Jennifer L., Fuchs, Charles S., Zhang, Xuehong, Wang, Molin, Giannakis, Marios, Meyerhardt, Jeffrey A., Nowak, Jonathan A. and Ogino, Shuji (2021). Smoking and colorectal cancer Iincidence by tumor microenvironment in cancer tissue. Annual Meeting of the American-Association-for-Cancer-Research (AACR), Philadelphia, PA, United States, 10 - 15 April 2021. Philadelphia, PA, United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2021-2733 |
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2021 Journal Article Association of Fusobacterium nucleatum with specific T-cell subsets in the colorectal carcinoma microenvironmentBorowsky, Jennifer, Haruki, Koichiro, Lau, Mai Chan, Costa, Andressa Dias, Vayrynen, Juha P., Ugai, Tomotaka, Arima, Kota, Da Silva, Annacarolina, Felt, Kristen D., Zhao, Melissa, Gurjao, Carino, Twombly, Tyler S., Fujiyoshi, Kenji, Vayrynen, Sara A., Hamada, Tsuyoshi, Mima, Kosuke, Bullman, Susan, Harrison, Tabitha A., Phipps, Amanda I., Peters, Ulrike, Ng, Kimmie, Meyerhardt, Jeffrey A., Song, Mingyang, Giovannucci, Edward L., Wu, Kana, Zhang, Xuehong, Freeman, Gordon J., Huttenhower, Curtis, Garrett, Wendy S. ... Ogino, Shuji (2021). Association of Fusobacterium nucleatum with specific T-cell subsets in the colorectal carcinoma microenvironment. Clinical Cancer Research, 27 (10), 2816-2826. doi: 10.1158/1078-0432.CCR-20-4009 |
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2021 Journal Article Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironmentVäyrynen, Juha P, Haruki, Koichiro, Väyrynen, Sara A, Lau, Mai Chan, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Ugai, Tomotaka, Kishikawa, Junko, Akimoto, Naohiko, Zhong, Rong, Shi, Shanshan, Chang, Tzuu-Wang, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Da Silva, Annacarolina, Song, Mingyang, Wu, Kana, Zhang, Xuehong, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2021). Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment. Journal for Immunotherapy of Cancer, 9 (4) e002297, e002297. doi: 10.1136/jitc-2020-002297 |
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2021 Journal Article Tumor budding, poorly differentiated clusters, and T-cell response in colorectal cancer (vol 57, 102860, 2020)Fujiyoshi, Kenji, Vayrynen, Juha P., Borowsky, Jennifer, Papke, David J., Arima, Kota, Haruki, Koichiro, Kishikawa, Junko, Akimoto, Naohiko, Ugai, Tomotaka, Lau, Mai Chan, Gu, Simeng, Shi, Shanshan, Zhao, Melissa, Da Silva, Annacarolina Fabiana Lucia, Twombly, Tyler S., Nan, Hongmei, Meyerhardt, Jeffrey A., Song, Mingyang, Zhang, Xuehong, Wu, Kana, Chan, Andrew T., Fuchs, Charles S., Lennerz, Jochen K., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2021). Tumor budding, poorly differentiated clusters, and T-cell response in colorectal cancer (vol 57, 102860, 2020). Ebiomedicine, 66. |
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2021 Journal Article The prognostic role of macrophage polarization in the colorectal cancer microenvironmentVäyrynen, Juha P, Haruki, Koichiro, Lau, Mai Chan, Väyrynen, Sara A, Zhong, Rong, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Kishikawa, Junko, Gu, Simeng, Aminmozaffari, Saina, Shi, Shanshan, Baba, Yoshifumi, Akimoto, Naohiko, Ugai, Tomotaka, Da Silva, Annacarolina, Guerriero, Jennifer L, Song, Mingyang, Wu, Kana, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2021). The prognostic role of macrophage polarization in the colorectal cancer microenvironment. Cancer Immunology Research, 9 (1), 8-19. doi: 10.1158/2326-6066.CIR-20-0527 |
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2020 Journal Article Coffee Intake and Colorectal Cancer Incidence According to T-Cell ResponseUgai, Tomotaka, Haruki, Koichiro, Väyrynen, Juha P., Zhong, Rong, Borowsky, Jennifer, Fujiyoshi, Kenji, Lau, Mai Chan, Zhao, Melissa, Akimoto, Naohiko, Chang, Tzuu-Wang, Kishikawa, Junko, Arima, Kota, Shi, Shan-Shan, Gu, Simeng, Fuchs, Charles S., Giovannucci, Edward L., Giannakis, Marios, Zhang, Xuehong, Song, Mingyang, Meyerhardt, Jeffrey A., Wang, Molin, Nowak, Jonathan A. and Ogino, Shuji (2020). Coffee Intake and Colorectal Cancer Incidence According to T-Cell Response. JNCI cancer spectrum, 4 (6) pkaa068, 1-5. doi: 10.1093/jncics/pkaa068 |
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2020 Journal Article PET imaging quantifying Ga-PSMA-11 uptake in metastatic colorectal cancerCuda, Tahleesa J., Riddell, Andrew D., Liu, Cheng, Whitehall, Vicki L., Borowsky, Jennifer, Wyld, David K., Burge, Matthew E., Ahern, Elizabeth, Griffin, Alison, Lyons, Nicholas J. R., Rose, Stephen E., Clark, David A., Stevenson, Andrew R. L., Hooper, John D., Puttick, Simon and Thomas, Paul A. (2020). PET imaging quantifying Ga-PSMA-11 uptake in metastatic colorectal cancer. The Journal of Nuclear Medicine, 61 (11), 1576-1579. doi: 10.2967/jnumed.119.233312 |
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2020 Journal Article Prognostic significance of immune cell populations identified by machine learning in colorectal cancer using routine hematoxylin and eosin-stained sectionsVäyrynen, Juha P, Lau, Mai Chan, Haruki, Koichiro, Väyrynen, Sara A, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Kishikawa, Junko, Gu, Simeng, Aminmozaffari, Saina, Shi, Shanshan, Baba, Yoshifumi, Akimoto, Naohiko, Ugai, Tomotaka, Da Silva, Annacarolina, Song, Mingyang, Wu, Kana, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2020). Prognostic significance of immune cell populations identified by machine learning in colorectal cancer using routine hematoxylin and eosin-stained sections. Clinical Cancer Research, 26 (16), 4326-4338. doi: 10.1158/1078-0432.CCR-20-0071 |
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2020 Conference Publication Aspirin reduces the incidence of metastasis in a preclinical study of Braf mutant colorectal cancerKane, Alexandra, Liu, Cheng, Fennell, Lochlan, McKeone, Diane, Borowsky, Jennifer, Leggett, Barbara and Whitehall, Vicki (2020). Aspirin reduces the incidence of metastasis in a preclinical study of Braf mutant colorectal cancer. AACR Annual Meeting 2020, Philadelphia, PA, United States, 22 - 24 June 2020. Philadelphia, PA, United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2020-1103 |
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2020 Journal Article Smoking status at diagnosis and colorectal cancer prognosis according to tumor lymphocytic reactionFujiyoshi, Kenji, Chen, Yang, Haruki, Koichiro, Ugai, Tomotaka, Kishikawa, Junko, Hamada, Tsuyoshi, Liu, Li, Arima, Kota, Borowsky, Jennifer, Väyrynen, Juha P, Zhao, Melissa, Lau, Mai Chan, Gu, Simeng, Shi, Shanshan, Akimoto, Naohiko, Twombly, Tyler S, Drew, David A, Song, Mingyang, Chan, Andrew T, Giovannucci, Edward L, Meyerhardt, Jeffrey A, Fuchs, Charles S, Nishihara, Reiko, Lennerz, Jochen K, Giannakis, Marios, Nowak, Jonathan A, Zhang, Xuehong, Wu, Kana and Ogino, Shuji (2020). Smoking status at diagnosis and colorectal cancer prognosis according to tumor lymphocytic reaction. JNCI Cancer Spectrum, 4 (5) pkaa040. doi: 10.1093/jncics/pkaa040 |
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2020 Journal Article Tumour budding, poorly differentiated clusters, and T-cell response in colorectal cancerFujiyoshi, Kenji, Väyrynen, Juha P., Borowsky, Jennifer, Papke, David J., Arima, Kota, Haruki, Koichiro, Kishikawa, Junko, Akimoto, Naohiko, Ugai, Tomotaka, Lau, Mai Chan, Gu, Simeng, Shi, Shanshan, Zhao, Melissa, Da Silva, Annacarolina Fabiana Lucia, Twombly, Tyler S., Nan, Hongmei, Meyerhardt, Jeffrey A., Song, Mingyang, Zhang, Xuehong, Wu, Kana, Chan, Andrew T., Fuchs, Charles S., Lennerz, Jochen K., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2020). Tumour budding, poorly differentiated clusters, and T-cell response in colorectal cancer. EBioMedicine, 57 102860, 1-11. doi: 10.1016/j.ebiom.2020.102860 |
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2020 Journal Article Immune checkpoint inhibitor-associated celiac diseaseBadran, Yousef R., Shih, Angela, Leet, Donna, Mooradian, Meghan J., Coromilas, Alexandra, Chen, Jonathan, Kem, Marina, Zheng, Hui, Borowsky, Jennifer, Misdraji, Joseph, Mino-Kenudson, Mari and Dougan, Michael (2020). Immune checkpoint inhibitor-associated celiac disease. Journal for Immunotherapy of Cancer, 8 (1) e000958, e000958. doi: 10.1136/jitc-2020-000958 |
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2020 Conference Publication Immune checkpoint inhibitor-associated celiac diseaseBadran, Yousef R., Shih, Angela, Leet, Donna, Coromilas, Alexandra, Chen, Jonathan, Kem, Marina, Borowsky, Jennifer, Misdraji, Joseph, Mino-Kenudson, Mari and Dougan, Michael (2020). Immune checkpoint inhibitor-associated celiac disease. Crohn's and Colitis Congress, Austin, TX, United States, 23 - 25 January 2020. Philadelphia, PA, United States: Elsevier. |
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2020 Journal Article Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancerHaruki, Koichiro, Kosumi, Keisuke, Hamada, Tsuyoshi, Twombly, Tyler S, Väyrynen, Juha P, Kim, Sun A, Masugi, Yohei, Qian, Zhi Rong, Mima, Kosuke, Baba, Yoshifumi, da Silva, Annacarolina, Borowsky, Jennifer, Arima, Kota, Fujiyoshi, Kenji, Lau, Mai Chan, Li, Peilong, Guo, Chunguang, Chen, Yang, Song, Mingyang, Nowak, Jonathan A, Nishihara, Reiko, Yanaga, Katsuhiko, Zhang, Xuehong, Wu, Kana, Bullman, Susan, Garrett, Wendy S, Huttenhower, Curtis, Meyerhardt, Jeffrey A, Giannakis, Marios ... Ogino, Shuji (2020). Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer. Journal of Pathology, 250 (4), 397-408. doi: 10.1002/path.5381 |
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2020 Conference Publication Prognostic significance of immune cells and their spatial distribution in colorectal cancer determined by computational pathology using hematoxylin & eosin stained sectionsVayrynen, Juha, Lau, Mai Chan, Haruki, Koichiro, Vayrynen, Sara, Costa, Andressa Dias, Borowsky, Jennifer, Zhao, Melissa, Kishikawa, Junko, Gu, Simeng, Da Silva, Annacarolina Fabiana Lucia, Fuchs, Charles, Meyerhardt, Jeffrey, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan (2020). Prognostic significance of immune cells and their spatial distribution in colorectal cancer determined by computational pathology using hematoxylin & eosin stained sections. USCAP 109th Annual Meeting 2020, Los Angeles, CA, United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-020-0386-7 |
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2020 Conference Publication Immune checkpoint inhibitor-associated celiac diseaseShih, Angela, Badran, Yousef, Coromilas, Alexandra, Chen, Jonathan, Kem, Marina, Borowsky, Jennifer, Misdraji, Joseph, Dougan, Michael and Mino-Kenudson, Mari (2020). Immune checkpoint inhibitor-associated celiac disease. USCAP 109th Annual Meeting 2020, Los Angeles, CA, United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-020-0386-7 |
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2020 Conference Publication Defining the Prognostic Significance of Macrophages in the Colorectal Cancer Microenvironment via Multimarker Measurement of the Macrophage Polarization SpectrumVayrynen, Juha, Haruki, Koichiro, Lau, Mai Chan, Vayrynen, Sara, Costa, Andressa Dias, Borowsky, Jennifer, Zhao, Melissa, Kishikawa, Junko, Gu, Simeng, Da Silva, Annacarolina Fabiana Lucia, Fuchs, Charles, Meyerhardt, Jeffrey, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan (2020). Defining the Prognostic Significance of Macrophages in the Colorectal Cancer Microenvironment via Multimarker Measurement of the Macrophage Polarization Spectrum. 109th Annual Meeting of the United States and Canadian Academy of Pathology (USCAP), Los Angeles, CA United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier. |
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2020 Conference Publication Risk prediction model based on prognostic factors beyond lymph node status in colorectal cancer stages II/III: an integration of mixed clinicopathologic data using Bayesian ensemble treesZhao, Melissa, Lau, Mai Chan, Haruki, Koichiro, Vayrynen, Juha, Vayrynen, Sara, Costa, Andressa Dias, Borowsky, Jennifer, Gu, Simeng, Gurjao, Carino, Fujiyoshi, Kenji, Arima, Kota, Hamada, Tsuyoshi, Lennerz, Jochen, Fuchs, Charles, Chan, Andrew, Ng, Kimmie, Wu, Kana, Zhang, Xuehong, Meyerhardt, Jeffrey, Song, Mingyang, Nowak, Jonathan, Giannakis, Marios, Reiko, Nishihara and Ogino, Shuji (2020). Risk prediction model based on prognostic factors beyond lymph node status in colorectal cancer stages II/III: an integration of mixed clinicopathologic data using Bayesian ensemble trees. USCAP 109th Annual Meeting 2020: Eyes on you, Los Angeles, CA, United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-020-0386-7 |
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2020 Conference Publication Defining the prognostic significance of macrophages in the colorectal cancer microenvironment via multimarker measurement of the macrophage polarization spectrumVayrynen, Juha, Haruki, Koichiro, Lau, Mai Chan, Vayrynen, Sara, Costa, Andressa Dias, Borowsky, Jennifer, Zhao, Melissa, Kishikawa, Junko, Gu, Simeng, Da Silva, Annacarolina Fabiana Lucia, Fuchs, Charles, Meyerhardt, Jeffrey, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan (2020). Defining the prognostic significance of macrophages in the colorectal cancer microenvironment via multimarker measurement of the macrophage polarization spectrum. USCAP 109th Annual Meeting 2020: Eyes on you, Los Angeles, CA, United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-020-0386-7 |
