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2020 Conference Publication Risk Prediction Model Based on Prognostic Factors Beyond Lymph Node Status in Colorectal Cancer Stages II/III: An Integration of Mixed Clinicopathologic Data Using Bayesian Ensemble TreesZhao, Melissa, Lau, Mai Chan, Haruki, Koichiro, Vayrynen, Juha, Vayrynen, Sara, Costa, Andressa Dias, Borowsky, Jennifer, Gu, Simeng, Gurjao, Carino, Fujiyoshi, Kenji, Arima, Kota, Hamada, Tsuyoshi, Lennerz, Jochen, Fuchs, Charles, Chan, Andrew, Ng, Kimmie, Wu, Kana, Zhang, Xuehong, Meyerhardt, Jeffrey, Song, Mingyang, Nowak, Jonathan, Giannakis, Marios, Reiko, Nishihara and Ogino, Shuji (2020). Risk Prediction Model Based on Prognostic Factors Beyond Lymph Node Status in Colorectal Cancer Stages II/III: An Integration of Mixed Clinicopathologic Data Using Bayesian Ensemble Trees. 109th Annual Meeting of the United States and Canadian Academy of Pathology (USCAP), Los Angeles, CA United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier. |
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2020 Conference Publication Prognostic significance of immune cells and their spatial distribution in colorectal cancer determined by computational pathology using hematoxylin & eosin stained sectionsVayrynen, Juha, Lau, Mai Chan, Haruki, Koichiro, Vayrynen, Sara, Costa, Andressa Dias, Borowsky, Jennifer, Zhao, Melissa, Kishikawa, Junko, Gu, Simeng, Da Silva, Annacarolina Fabiana Lucia, Fuchs, Charles, Meyerhardt, Jeffrey, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan (2020). Prognostic significance of immune cells and their spatial distribution in colorectal cancer determined by computational pathology using hematoxylin & eosin stained sections. USCAP 109th Annual Meeting 2020, Los Angeles, CA, United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-020-0386-7 |
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2020 Conference Publication Immune checkpoint inhibitor-associated celiac diseaseShih, Angela, Badran, Yousef, Coromilas, Alexandra, Chen, Jonathan, Kem, Marina, Borowsky, Jennifer, Misdraji, Joseph, Dougan, Michael and Mino-Kenudson, Mari (2020). Immune checkpoint inhibitor-associated celiac disease. USCAP 109th Annual Meeting 2020, Los Angeles, CA, United States, 29 February - 5 March 2020. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-020-0386-7 |
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2020 Journal Article Alterations in signaling pathways that accompany spontaneous transition to malignancy in a mouse model of BRAF mutant microsatellite stable colorectal cancerKane, Alexandra M., Fennell, Lochlan J., Liu, Cheng, Borowsky, Jennifer, McKeone, Diane M., Bond, Catherine E., Kazakoff, Stephen, Patch, Ann-Marie, Koufariotis, Lambros T., Pearson, John, Waddell, Nicola, Leggett, Barbara A. and Whitehall, Vicki L.J. (2020). Alterations in signaling pathways that accompany spontaneous transition to malignancy in a mouse model of BRAF mutant microsatellite stable colorectal cancer. Neoplasia, 22 (2), 120-128. doi: 10.1016/j.neo.2019.12.002 |
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2019 Journal Article Clinicopathological features of pyloric gland adenomas of the duodenum: a multicentre study of 57 casesMiller, Gregory C., Kumarasinghe, Marian P., Borowsky, Jennifer, Choi, Won-Tak, Setia, Namrata, Clauditz, Till, Gidwani, Raja, Sufiyan, Wajiha, Lauwers, Gregory Y. and Brown, Ian S. (2019). Clinicopathological features of pyloric gland adenomas of the duodenum: a multicentre study of 57 cases. Histopathology, 76 (3) his.13996, 404-410. doi: 10.1111/his.13996 |
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2019 Conference Publication Aspirin reduces the incidence of metastatic Braf mutant colorectal cancer in a preclinical trialKane, A., Mckeone, D., Liu, C., Borowsky, J., Leggett, B. and Whitehall, V. (2019). Aspirin reduces the incidence of metastatic Braf mutant colorectal cancer in a preclinical trial. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) “The Universe Within”, Adelaide, SA, Australia, 8 – 10 September 2019. Richmond, VIC, Australia: John Wiley & Sons. doi: 10.1111/jgh.14797 |
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2019 Journal Article Spectrum of gastrointestinal tract pathology in a multicenter cohort of 43 Cowden syndrome patientsBorowsky, Jennifer, Setia, Namrata, Rosty, Christophe, Conrad, Rod, Susman, Rachel, Misdraji, Joseph, Hart, John, Lauwers, Gregory Y. and Brown, Ian S. (2019). Spectrum of gastrointestinal tract pathology in a multicenter cohort of 43 Cowden syndrome patients. Modern Pathology, 32 (12), 1814-1822. doi: 10.1038/s41379-019-0316-7 |
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2019 Journal Article Integrative genome-scale DNA methylation analysis of a large and unselected cohort reveals five distinct subtypes of colorectal adenocarcinomasFennell, Lochlan, Dumenil, Troy, Wockner, Leesa, Hartel, Gunter, Nones, Katia, Bond, Catherine, Borowsky, Jennifer, Liu, Cheng, McKeone, Diane, Bowdler, Lisa, Montgomery, Grant, Klein, Kerenaftali, Hoffmann, Isabell, Patch, Ann-Marie, Kazakoff, Stephen, Pearson, John, Waddell, Nicola, Wirapati, Pratyaksha, Lochhead, Paul, Imamura, Yu, Ogino, Shuji, Shao, Renfu, Tejpar, Sabine, Leggett, Barbara and Whitehall, Vicki (2019). Integrative genome-scale DNA methylation analysis of a large and unselected cohort reveals five distinct subtypes of colorectal adenocarcinomas. Cellular and Molecular Gastroenterology and Hepatology, 8 (2), 269-290. doi: 10.1016/j.jcmgh.2019.04.002 |
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2019 Conference Publication Tumor-Immune Partitioning and Clustering (TIPC) reveals distinct signatures of tumor-immune cell interactions within the tumor microenvironmentLau, Mai Chan, Zhao, Melissa, Borowsky, Jennifer, Costa, Andressa Dias, Da Silva, Annacarolina Fabiana Lucia, Felt, Kristen, Hamada, Tsuyoshi, Lennerz, Jochen, Fuchs, Charles, Ogino, Shuji and Nowak, Jonathan (2019). Tumor-Immune Partitioning and Clustering (TIPC) reveals distinct signatures of tumor-immune cell interactions within the tumor microenvironment. USCAP 108th Annual Meeting 2019 - Unlocking Your Ingenuity, National Harbor, MD, United States, 16 - 21 March 2019. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-019-0219-8 |
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2019 Conference Publication Quantitative, multiplexed analysis of the colorectal cancer microenvironment reveals prognostic significance for T cell subset densities and spatial distributionBorowsky, Jennifer, Haruki, Koichiro, Costa, Andressa Dias, Zhao, Melissa, Lau, Mai Chan, Da Silva, Annacarolina Fabiana Lucia, Hamada, Tsuyoshi, Felt, Kristen, Lennerz, Jochen, Fuchs, Charles, Giannakis, Marios, Nowak, Jonathan and Ogino, Shuji (2019). Quantitative, multiplexed analysis of the colorectal cancer microenvironment reveals prognostic significance for T cell subset densities and spatial distribution. 108th Annual Meeting of the United States and Canadian Academy of Pathology (USCAP) - Unlocking Your Ingenuity, National Harbor, MD United States, 16-21 March 2019. NEW YORK: NATURE PUBLISHING GROUP. |
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2019 Conference Publication Tumor-Immune Partitioning and Clustering (TIPC) reveals distinct signatures of tumor-immune cell interactions within the tumor microenvironmentLau, Mai Chan, Zhao, Melissa, Borowsky, Jennifer, Costa, Andressa Dias, Da Silva, Annacarolina Fabiana Lucia, Felt, Kristen, Hamada, Tsuyoshi, Lennerz, Jochen, Fuchs, Charles, Ogino, Shuji and Nowak, Jonathan (2019). Tumor-Immune Partitioning and Clustering (TIPC) reveals distinct signatures of tumor-immune cell interactions within the tumor microenvironment. 108th Annual Meeting of the United-States-and-Canadian-Academy-of-Pathology (USCAP) - Unlocking Your Ingenuity, National Harbor, MD, United States, 16 - 21 March 2019. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41379-019-0232-x |
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2019 Conference Publication Fusobacterium nucleatum Levels Correlate with Specific Immune Cell Subtypes in the Colorectal Cancer MicroenvironmentOgino, Shuji, Borowsky, Jennifer, Da Silva, Annacarolina Fabiana Lucia, Costa, Andressa Dias, Felt, Kristen, Lau, Mai Chan, Zhao, Melissa, Haruki, Koichiro, Hamada, Tsuyoshi, Mima, Kosuke, Bullman, Susan, Lennerz, Jochen, Giannakis, Marios, Fuchs, Charles and Nowak, Jonathan (2019). Fusobacterium nucleatum Levels Correlate with Specific Immune Cell Subtypes in the Colorectal Cancer Microenvironment. 108th Annual Meeting of the United-States-and-Canadian-Academy-of-Pathology (USCAP) - Unlocking Your Ingenuity, National Harbor, MD United States, 16-21 March 2019. Amsterdam, Netherlands: Elsevier. |
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2019 Conference Publication Fusobacterium nucleatum levels correlate with specific immune cell subtypes in the colorectal cancer microenvironmentOgino, Shuji, Borowsky, Jennifer, Da Silva, Annacarolina Fabiana Lucia, Costa, Andressa Dias, Felt, Kristen, Lau, Mai Chan, Zhao, Melissa, Haruki, Koichiro, Hamada, Tsuyoshi, Mima, Kosuke, Bullman, Susan, Lennerz, Jochen, Giannakis, Marios, Fuchs, Charles and Nowak, Jonathan (2019). Fusobacterium nucleatum levels correlate with specific immune cell subtypes in the colorectal cancer microenvironment. USCAP 108th Annual Meeting 2019 - Unlocking Your Ingenuity, National Harbor, MD, United States, 16 - 21 March 2019. Amsterdam, Netherlands: Elsevier BV. doi: 10.1038/s41374-019-0213-1 |
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2019 Conference Publication Quantitative, multiplexed analysis of the colorectal cancer microenvironment reveals prognostic significance for T cell subset densities and spatial distributionBorowsky, Jennifer, Haruki, Koichiro, Costa, Andressa Dias, Zhao, Melissa, Lau, Mai Chan, Da Silva, Annacarolina Fabiana Lucia, Hamada, Tsuyoshi, Felt, Kristen, Lennerz, Jochen, Fuchs, Charles, Giannakis, Marios, Nowak, Jonathan and Ogino, Shuji (2019). Quantitative, multiplexed analysis of the colorectal cancer microenvironment reveals prognostic significance for T cell subset densities and spatial distribution. 108th Annual Meeting of the United States and Canadian Academy of Pathology (USCAP) - Unlocking Your Ingenuity, National Harbor, MD United States, 16-21 March 2019. Amsterdam, Netherlands: Elsevier. |
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2018 Journal Article The amount of Bifidobacterium genus in colorectal carcinoma tissue in relation to tumor characteristics and clinical outcomeKosumi, Keisuke, Hamada, Tsuyoshi, Koh, Hideo, Borowsky, Jennifer, Bullman, Susan, Twombly, Tyler S., Nevo, Daniel, Masugi, Yohei, Liu, Li, da Silva, Annacarolina, Chen, Yang, Du, Chunxia, Gu, Mancang, Li, Chenxi, Li, Wanwan, Liu, Hongli, Shi, Yan, Mima, Kosuke, Song, Mingyang, Nosho, Katsuhiko, Nowak, Jonathan A., Nishihara, Reiko, Baba, Hideo, Zhang, Xuehong, Wu, Kana, Wang, Molin, Huttenhower, Curtis, Garrett, Wendy S., Meyerson, Matthew L. ... Ogino, Shuji (2018). The amount of Bifidobacterium genus in colorectal carcinoma tissue in relation to tumor characteristics and clinical outcome. American Journal of Pathology, 188 (12), 2839-2852. doi: 10.1016/j.ajpath.2018.08.015 |
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2018 Conference Publication Bifidobacterium genus in colorectal carcinoma tissue in relation to tumor characteristics and patient survivalBorowsky, Jennifer, Kosumi, Keisuke, Hamada, Tsuyoshi, Koh, Hideo, Bullman, Susan, Twombly, Tyler S., Masugi, Yohei, Liu, Li, da Silva, Annacarolina, Chen, Yang, Du, Chunxia, Gu, Mancang, Li, Chenxi, Li, Wanwan, Liu, Hongli, Shi, Yan, Song, Mingyang, Nosho, Katsuhiko and Nowak, Jonathan A. (2018). Bifidobacterium genus in colorectal carcinoma tissue in relation to tumor characteristics and patient survival. The ASPET Annual Meeting at Experimental Biology 2018, San Diego, CA, United States, 21 - 25 April 2018. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1096/fasebj.2018.32.1_supplement.407.3 |
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2018 Conference Publication Body Mass Index and other anthropomorphic variables in relation to risk of colorectal carcinoma subtypes classified by tumor differentiation statusBorowsky, Jennifer, Hanyuda, Akiko, Nishihara, Reiko, Song, Mingyang, Lennerz, Jochen K., Meyerhardt, Jeffrey A., Chan, Andrew T., Fuchs, Charles S., Giovannucci, Edward L., Nowak, Jonathan A., Hamada, Tsuyoshi and Ogino, Shuji (2018). Body Mass Index and other anthropomorphic variables in relation to risk of colorectal carcinoma subtypes classified by tumor differentiation status. The ASPET Annual Meeting at Experimental Biology 2018, San Diego, CA, United States, 21 - 25 April 2018. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1096/fasebj.2018.32.1_supplement.677.9 |
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2018 Conference Publication Tumor Nuclear YAP1 Expression Status and Molecular Characteristics in relation to Immune Response to Colorectal CarcinomaBorowsky, Jennifer, Du, Chunxia, Kosumi, Keisuke, Hamada, Tsuyoshi, Morikawa, Teppei, da Silva, Annacarolina, Nosho, Katsuhiko, Nowak, Jonathan A., Nishihara, Reiko, Lennerz, Jochen K., Giannakis, Marios, Chan, Andrew T., Meyerhardt, Jeffrey A., Fuchs, Charles S. and Ogino, Shuji (2018). Tumor Nuclear YAP1 Expression Status and Molecular Characteristics in relation to Immune Response to Colorectal Carcinoma. Annual Meeting of Amer-Assoc-of-Anatomists (AAA), Amer-Physiol-Soc (APS), Amer-Soc-for-Biochemistry-and-Mol-Biol (ASBMB), Amer-Soc-for-Investigat-Pathol (ASIP), Amer-Soc-for-Pharmacol-and-Experimental-Therapeut (ASPET) on Experimental Biology (EB), San Diego, CA United States, 21-25 April 2018. Hoboken, NJ United States: John Wiley & Sons. |
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2018 Conference Publication Multiplexed immuno-profiling of the colorectal carcinoma microenvironment using archival human tissueBorowsky, Jennifer, Nowak, Jonathan A., da Silva, Annacarolina, Hamada, Tsuyoshi, Morikawa, Teppei, Twombly, Tyler S., Nosho, Katsuhiko, Nishihara, Reiko, Lennerz, Jochen K., Giannakis, Marios, Chan, Andrew T., Meyerhardt, Jeffrey A., Fuchs, Charles S. and Ogino, Shuji (2018). Multiplexed immuno-profiling of the colorectal carcinoma microenvironment using archival human tissue. The ASPET Annual Meeting at Experimental Biology 2018, San Diego, CA, United States, 21 - 25 April 2018. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1096/fasebj.2018.32.1_supplement.818.4 |
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2018 Journal Article The role of APC in WNT pathway activation in serrated neoplasiaBorowsky, Jennifer, Dumenil, Troy, Bettington, Mark, Pearson, Sally-Ann, Bond, Catherine, Fennell, Lochlan, Liu, Cheng, McKeone, Diane, Rosty, Christophe, Brown, Ian, Walker, Neal, Leggett, Barbara and Whitehall, Vicki (2018). The role of APC in WNT pathway activation in serrated neoplasia. Modern Pathology, 31 (3), 495-504. doi: 10.1038/modpathol.2017.150 |
