|
2025 Journal Article Utility of random neosquamous and cardia biopsy specimens during surveillance after dysplastic Barrett eradication: a prospective single-center studyYadav, Aman, Gupta, Sunil, Karim, Shwan, Banh, Xuan, Borowsky, Jennifer, Cooper, Caroline, Hughes, Ian, Hourigan, Luke F. and Huelsen, Alexander (2025). Utility of random neosquamous and cardia biopsy specimens during surveillance after dysplastic Barrett eradication: a prospective single-center study. Gastrointestinal Endoscopy. doi: 10.1016/j.gie.2025.08.033 |
|
2025 Journal Article Inflammatory polypoid mass caused by sevelamer and sodium polystyrene crystalsHuang, Andrea, Borowsky, Jennifer, Ketheson, Prabha, Taylor, Andrew and Hamarneh, Zaki (2025). Inflammatory polypoid mass caused by sevelamer and sodium polystyrene crystals. Gastrointestinal Endoscopy, 101 (3), 685-686. doi: 10.1016/j.gie.2024.10.048 |
|
2025 Journal Article Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironmentLau, Mai Chan, Borowsky, Jennifer, Vayrynen, Juha P., Haruki, Koichiro, Zhao, Melissa, Dias Costa, Andressa, Gu, Simeng, da Silva, Annacarolina, Ugai, Tomotaka, Arima, Kota, Nguyen, Minh N., Takashima, Yasutoshi, Yeong, Joe, Tai, David, Hamada, Tsuyoshi, Lennerz, Jochen K., Fuchs, Charles S., Wu, Catherine J., Meyerhardt, Jeffrey A., Ogino, Shuji and Nowak, Jonathan A. (2025). Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment. PLoS Computational Biology, 21 (2) e1012707, 1-32. doi: 10.1371/journal.pcbi.1012707 |
|
2025 Journal Article Enterocolitis with rectal and ileal stenosis: a rare presentation of metastatic urothelial carcinomaSmith, Nicholas, Borowsky, Jennifer and Taylor, Andrew (2025). Enterocolitis with rectal and ileal stenosis: a rare presentation of metastatic urothelial carcinoma. BMJ Case Reports, 18 (1) e261930, 1-3. doi: 10.1136/bcr-2024-261930 |
|
2024 Journal Article Expanding the diagnostic toolkit in chronic cholestasisSmith, Nicholas, Borowsky, Jennifer and Thomas, James A. (2024). Expanding the diagnostic toolkit in chronic cholestasis. Gastroenterology, 168 (4), 655-658. doi: 10.1053/j.gastro.2024.08.005 |
|
2023 Journal Article Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic dataZhao, Melissa, Lau, Mai Chan, Haruki, Koichiro, Väyrynen, Juha P., Gurjao, Carino, Väyrynen, Sara A., Dias Costa, Andressa, Borowsky, Jennifer, Fujiyoshi, Kenji, Arima, Kota, Hamada, Tsuyoshi, Lennerz, Jochen K., Fuchs, Charles S., Nishihara, Reiko, Chan, Andrew T., Ng, Kimmie, Zhang, Xuehong, Meyerhardt, Jeffrey A., Song, Mingyang, Wang, Molin, Giannakis, Marios, Nowak, Jonathan A., Yu, Kun-Hsing, Ugai, Tomotaka and Ogino, Shuji (2023). Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic data. npj Precision Oncology, 7 (1) 57. doi: 10.1038/s41698-023-00406-8 |
|
2022 Journal Article Ileal pouch adenocarcinoma following ileal pouch-anal anastomosis in a transplant recipientWilliams, Thomas, Kaazan, Patricia, Slack, Timothy, Tallis, Caroline, Borowsky, Jennifer and Martin, Neal (2022). Ileal pouch adenocarcinoma following ileal pouch-anal anastomosis in a transplant recipient. Internal medicine journal, 52 (8), 1448-1449. doi: 10.1111/imj.15876 |
|
2022 Journal Article Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancerUgai, Tomotaka, Väyrynen, Juha P., Lau, Mai Chan, Borowsky, Jennifer, Akimoto, Naohiko, Väyrynen, Sara A., Zhao, Melissa, Zhong, Rong, Haruki, Koichiro, Dias Costa, Andressa, Fujiyoshi, Kenji, Arima, Kota, Wu, Kana, Chan, Andrew T., Cao, Yin, Song, Mingyang, Fuchs, Charles S., Wang, Molin, Lennerz, Jochen K., Ng, Kimmie, Meyerhardt, Jeffrey A., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2022). Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancer. Cancer Immunology, Immunotherapy, 71 (4), 933-942. doi: 10.1007/s00262-021-03056-6 |
|
2022 Journal Article Desmoplastic Reaction, Immune Cell Response, and Prognosis in Colorectal CancerAkimoto, Naohiko, Väyrynen, Juha P,, Zhao, Melissa, Ugai, Tomotaka, Fujiyoshi, Kenji, Borowsky, Jennifer, Zhong, Rong, Haruki, Koichiro, Arima, Kota, Lau, Mai Chan, Kishikawa, Junko, Twombly, Tyler S., Takashima, Yasutoshi, Song, Mingyang, Zhang, Xuehong, Wu, Kana, Chan, Andrew T., Meyerhardt, Jeffrey A., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2022). Desmoplastic Reaction, Immune Cell Response, and Prognosis in Colorectal Cancer. Frontiers in Immunology, 13 840198, 1-16. doi: 10.3389/fimmu.2022.840198 |
|
2022 Journal Article Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer MicroenvironmentVäyrynen, Juha P., Haruki, Koichiro, Lau, Mai Chan, Väyrynen, Sara A., Ugai, Tomotaka, Akimoto, Naohiko, Zhong, Rong, Zhao, Melissa, Dias Costa, Andressa, Borowsky, Jennifer, Bell, Phoenix, Takashima, Yasutoshi, Fujiyoshi, Kenji, Arima, Kota, Kishikawa, Junko, Shi, Shan-Shan, Twombly, Tyler S., Song, Mingyang, Wu, Kana, Chan, Andrew T., Zhang, Xuehong, Fuchs, Charles S., Meyerhardt, Jeffrey A., Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A. (2022). Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer Microenvironment. Cancer Immunology Research, 10 (2), 215-227. doi: 10.1158/2326-6066.CIR-21-0772 |
|
2022 Journal Article Coffee Intake of Colorectal Cancer Patients and Prognosis According to Histopathologic Lymphocytic Reaction and T-Cell InfiltratesUgai, Tomotaka, Haruki, Koichiro, Väyrynen, Juha P., Borowsky, Jennifer, Fujiyoshi, Kenji, Lau, Mai Chan, Akimoto, Naohiko, Zhong, Rong, Kishikawa, Junko, Arima, Kota, Shi, Shan-Shan, Zhao, Melissa, Fuchs, Charles S., Zhang, Xuehong, Giannakis, Marios, Song, Mingyang, Nan, Hongmei, Meyerhardt, Jeffrey A., Wang, Molin, Nowak, Jonathan A. and Ogino, Shuji (2022). Coffee Intake of Colorectal Cancer Patients and Prognosis According to Histopathologic Lymphocytic Reaction and T-Cell Infiltrates. Mayo Clinic Proceedings, 97 (1), 124-133. doi: 10.1016/j.mayocp.2021.09.007 |
|
2021 Journal Article Smoking and incidence of colorectal cancer subclassified by tumor-associated macrophage infiltratesUgai, Tomotaka, Väyrynen, Juha P, Haruki, Koichiro, Akimoto, Naohiko, Lau, Mai Chan, Zhong, Rong, Kishikawa, Junko, Väyrynen, Sara A, Zhao, Melissa, Fujiyoshi, Kenji, Costa, Andressa Dias, Borowsky, Jennifer, Arima, Kota, Guerriero, Jennifer L, Fuchs, Charles S, Zhang, Xuehong, Song, Mingyang, Wang, Molin, Giannakis, Marios, Meyerhardt, Jeffrey A, Nowak, Jonathan A and Ogino, Shuji (2021). Smoking and incidence of colorectal cancer subclassified by tumor-associated macrophage infiltrates. Journal of the National Cancer Institute, 114 (1), 68-77. doi: 10.1093/jnci/djab142 |
|
2021 Journal Article Association of Fusobacterium nucleatum with specific T-cell subsets in the colorectal carcinoma microenvironmentBorowsky, Jennifer, Haruki, Koichiro, Lau, Mai Chan, Costa, Andressa Dias, Vayrynen, Juha P., Ugai, Tomotaka, Arima, Kota, Da Silva, Annacarolina, Felt, Kristen D., Zhao, Melissa, Gurjao, Carino, Twombly, Tyler S., Fujiyoshi, Kenji, Vayrynen, Sara A., Hamada, Tsuyoshi, Mima, Kosuke, Bullman, Susan, Harrison, Tabitha A., Phipps, Amanda I., Peters, Ulrike, Ng, Kimmie, Meyerhardt, Jeffrey A., Song, Mingyang, Giovannucci, Edward L., Wu, Kana, Zhang, Xuehong, Freeman, Gordon J., Huttenhower, Curtis, Garrett, Wendy S. ... Ogino, Shuji (2021). Association of Fusobacterium nucleatum with specific T-cell subsets in the colorectal carcinoma microenvironment. Clinical Cancer Research, 27 (10), 2816-2826. doi: 10.1158/1078-0432.CCR-20-4009 |
|
2021 Journal Article Tumor budding, poorly differentiated clusters, and T-cell response in colorectal cancer (vol 57, 102860, 2020)Fujiyoshi, Kenji, Vayrynen, Juha P., Borowsky, Jennifer, Papke, David J., Arima, Kota, Haruki, Koichiro, Kishikawa, Junko, Akimoto, Naohiko, Ugai, Tomotaka, Lau, Mai Chan, Gu, Simeng, Shi, Shanshan, Zhao, Melissa, Da Silva, Annacarolina Fabiana Lucia, Twombly, Tyler S., Nan, Hongmei, Meyerhardt, Jeffrey A., Song, Mingyang, Zhang, Xuehong, Wu, Kana, Chan, Andrew T., Fuchs, Charles S., Lennerz, Jochen K., Giannakis, Marios, Nowak, Jonathan A. and Ogino, Shuji (2021). Tumor budding, poorly differentiated clusters, and T-cell response in colorectal cancer (vol 57, 102860, 2020). Ebiomedicine, 66. |
|
2021 Journal Article Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironmentVäyrynen, Juha P, Haruki, Koichiro, Väyrynen, Sara A, Lau, Mai Chan, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Ugai, Tomotaka, Kishikawa, Junko, Akimoto, Naohiko, Zhong, Rong, Shi, Shanshan, Chang, Tzuu-Wang, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Da Silva, Annacarolina, Song, Mingyang, Wu, Kana, Zhang, Xuehong, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2021). Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment. Journal for Immunotherapy of Cancer, 9 (4) e002297, e002297. doi: 10.1136/jitc-2020-002297 |
|
2021 Journal Article The prognostic role of macrophage polarization in the colorectal cancer microenvironmentVäyrynen, Juha P, Haruki, Koichiro, Lau, Mai Chan, Väyrynen, Sara A, Zhong, Rong, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Kishikawa, Junko, Gu, Simeng, Aminmozaffari, Saina, Shi, Shanshan, Baba, Yoshifumi, Akimoto, Naohiko, Ugai, Tomotaka, Da Silva, Annacarolina, Guerriero, Jennifer L, Song, Mingyang, Wu, Kana, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2021). The prognostic role of macrophage polarization in the colorectal cancer microenvironment. Cancer Immunology Research, 9 (1), 8-19. doi: 10.1158/2326-6066.CIR-20-0527 |
|
2020 Journal Article Coffee Intake and Colorectal Cancer Incidence According to T-Cell ResponseUgai, Tomotaka, Haruki, Koichiro, Väyrynen, Juha P., Zhong, Rong, Borowsky, Jennifer, Fujiyoshi, Kenji, Lau, Mai Chan, Zhao, Melissa, Akimoto, Naohiko, Chang, Tzuu-Wang, Kishikawa, Junko, Arima, Kota, Shi, Shan-Shan, Gu, Simeng, Fuchs, Charles S., Giovannucci, Edward L., Giannakis, Marios, Zhang, Xuehong, Song, Mingyang, Meyerhardt, Jeffrey A., Wang, Molin, Nowak, Jonathan A. and Ogino, Shuji (2020). Coffee Intake and Colorectal Cancer Incidence According to T-Cell Response. JNCI cancer spectrum, 4 (6) pkaa068, 1-5. doi: 10.1093/jncics/pkaa068 |
|
2020 Journal Article PET imaging quantifying Ga-PSMA-11 uptake in metastatic colorectal cancerCuda, Tahleesa J., Riddell, Andrew D., Liu, Cheng, Whitehall, Vicki L., Borowsky, Jennifer, Wyld, David K., Burge, Matthew E., Ahern, Elizabeth, Griffin, Alison, Lyons, Nicholas J. R., Rose, Stephen E., Clark, David A., Stevenson, Andrew R. L., Hooper, John D., Puttick, Simon and Thomas, Paul A. (2020). PET imaging quantifying Ga-PSMA-11 uptake in metastatic colorectal cancer. The Journal of Nuclear Medicine, 61 (11), 1576-1579. doi: 10.2967/jnumed.119.233312 |
|
2020 Journal Article Prognostic significance of immune cell populations identified by machine learning in colorectal cancer using routine hematoxylin and eosin-stained sectionsVäyrynen, Juha P, Lau, Mai Chan, Haruki, Koichiro, Väyrynen, Sara A, Dias Costa, Andressa, Borowsky, Jennifer, Zhao, Melissa, Fujiyoshi, Kenji, Arima, Kota, Twombly, Tyler S, Kishikawa, Junko, Gu, Simeng, Aminmozaffari, Saina, Shi, Shanshan, Baba, Yoshifumi, Akimoto, Naohiko, Ugai, Tomotaka, Da Silva, Annacarolina, Song, Mingyang, Wu, Kana, Chan, Andrew T, Nishihara, Reiko, Fuchs, Charles S, Meyerhardt, Jeffrey A, Giannakis, Marios, Ogino, Shuji and Nowak, Jonathan A (2020). Prognostic significance of immune cell populations identified by machine learning in colorectal cancer using routine hematoxylin and eosin-stained sections. Clinical Cancer Research, 26 (16), 4326-4338. doi: 10.1158/1078-0432.CCR-20-0071 |
|
2020 Journal Article Smoking status at diagnosis and colorectal cancer prognosis according to tumor lymphocytic reactionFujiyoshi, Kenji, Chen, Yang, Haruki, Koichiro, Ugai, Tomotaka, Kishikawa, Junko, Hamada, Tsuyoshi, Liu, Li, Arima, Kota, Borowsky, Jennifer, Väyrynen, Juha P, Zhao, Melissa, Lau, Mai Chan, Gu, Simeng, Shi, Shanshan, Akimoto, Naohiko, Twombly, Tyler S, Drew, David A, Song, Mingyang, Chan, Andrew T, Giovannucci, Edward L, Meyerhardt, Jeffrey A, Fuchs, Charles S, Nishihara, Reiko, Lennerz, Jochen K, Giannakis, Marios, Nowak, Jonathan A, Zhang, Xuehong, Wu, Kana and Ogino, Shuji (2020). Smoking status at diagnosis and colorectal cancer prognosis according to tumor lymphocytic reaction. JNCI Cancer Spectrum, 4 (5) pkaa040. doi: 10.1093/jncics/pkaa040 |
