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2023 Journal Article Cellular and molecular functions of SETD2 in the central nervous systemMitchell, Benjamin, Thor, Stefan and Piper, Michael (2023). Cellular and molecular functions of SETD2 in the central nervous system. Journal of Cell Science, 136 (21) jcs261406, 1-11. doi: 10.1242/jcs.261406 |
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2023 Journal Article Cytocipher determines significantly different populations of cells in single cell RNA-seq dataBalderson, Brad, Piper, Michael, Thor, Stefan and Boden, Mikael (2023). Cytocipher determines significantly different populations of cells in single cell RNA-seq data. Bioinformatics, 39 (7) btad435. doi: 10.1093/bioinformatics/btad435 |
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2023 Journal Article A mouse model with a frameshift mutation in the nuclear factor I/X (NFIX) gene has phenotypic features of Marshall‐Smith SyndromeKooblall, Kreepa G., Stevenson, Mark, Stewart, Michelle, Harris, Lachlan, Zalucki, Oressia, Dewhurst, Hannah, Butterfield, Natalie, Leng, Houfu, Hough, Tertius A., Ma, Da, Siow, Bernard, Potter, Paul, Cox, Roger D., Brown, Stephen D. M., Horwood, Nicole, Wright, Benjamin, Lockstone, Helen, Buck, David, Vincent, Tonia L., Hannan, Fadil M., Bassett, J.H. Duncan, Williams, Graham R., Lines, Kate E., Piper, Michael, Wells, Sara, Teboul, Lydia, Hennekam, Raoul C. and Thakker, Rajesh V. (2023). A mouse model with a frameshift mutation in the nuclear factor I/X (NFIX) gene has phenotypic features of Marshall‐Smith Syndrome. JBMR Plus, 7 (6) e10739, 1-14. doi: 10.1002/jbm4.10739 |
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2022 Journal Article Hydrocephalus in Nfix−/− mice is underpinned by changes in ependymal cell physiologyHarkins, Danyon, Harvey, Tracey J., Atterton, Cooper, Miller, Ingrid, Currey, Laura, Oishi, Sabrina, Kasherman, Maria, Davila, Raul Ayala, Harris, Lucy, Green, Kathryn, Piper, Hannah, Parton, Robert G., Thor, Stefan, Cooper, Helen M. and Piper, Michael (2022). Hydrocephalus in Nfix−/− mice is underpinned by changes in ependymal cell physiology. Cells, 11 (15) 2377, 1-27. doi: 10.3390/cells11152377 |
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2022 Journal Article Reciprocal regulation of BRN2 and NOTCH1/2 signaling synergistically drives melanoma cell migration and invasionFane, Mitchell E., Chhabra, Yash, Spoerri, Loredana, Simmons, Jacinta L., Ludwig, Raquelle, Bonvin, Elise, Goding, Colin R., Sturm, Richard A., Boyle, Glen M., Haass, Nikolas K., Piper, Michael and Smith, Aaron G. (2022). Reciprocal regulation of BRN2 and NOTCH1/2 signaling synergistically drives melanoma cell migration and invasion. Journal of Investigative Dermatology, 142 (7), 1845-1857. doi: 10.1016/j.jid.2020.12.039 |
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2022 Journal Article Functional divergence of the two Elongator subcomplexes during neurodevelopmentGaik, Monika, Kojic, Marija, Stegeman, Megan R., Öncü‐Öner, Tülay, Kościelniak, Anna, Jones, Alun, Mohamed, Ahmed, Chau, Pak Yan Stefanie, Sharmin, Sazia, Chramiec‐Głąbik, Andrzej, Indyka, Paulina, Rawski, Michał, Biela, Anna, Dobosz, Dominika, Millar, Amanda, Chau, Vann, Ünalp, Aycan, Piper, Michael, Bellingham, Mark C., Eichler, Evan E., Nickerson, Deborah A., Güleryüz, Handan, Abbassi, Nour El Hana, Jazgar, Konrad, Davis, Melissa J., Mercimek‐Andrews, Saadet, Cingöz, Sultan, Wainwright, Brandon J. and Glatt, Sebastian (2022). Functional divergence of the two Elongator subcomplexes during neurodevelopment. EMBO Molecular Medicine, 14 (7) e15608, e15608. doi: 10.15252/emmm.202115608 |
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2022 Journal Article The DUB club: deubiquitinating enzymes and neurodevelopmental disordersJolly, Lachlan A., Kumar, Raman, Penzes, Peter, Piper, Michael and Gecz, Jozef (2022). The DUB club: deubiquitinating enzymes and neurodevelopmental disorders. Biological Psychiatry, 92 (8), 614-625. doi: 10.1016/j.biopsych.2022.03.022 |
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2022 Journal Article Selective requirement for polycomb repressor complex 2 in the generation of specific hypothalamic neuronal subtypesYaghmaeian Salmani, Behzad, Balderson, Brad, Bauer, Susanne, Ekman, Helen, Starkenberg, Annika, Perlmann, Thomas, Piper, Michael, Bodén, Mikael and Thor, Stefan (2022). Selective requirement for polycomb repressor complex 2 in the generation of specific hypothalamic neuronal subtypes. Development, 149 (5) dev200076. doi: 10.1242/dev.200076 |
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2022 Journal Article Deletion of NFIX results in defective progression through meiosis within the mouse testisDavila, Raul Ayala, Spiller, Cassy, Harkins, Danyon, Harvey, Tracey, Jordan, Philip W., Gronostajski, Richard M., Piper, Michael and Bowles, Josephine (2022). Deletion of NFIX results in defective progression through meiosis within the mouse testis. Biology of Reproduction, 106 (6), 1191-1205. doi: 10.1093/biolre/ioac049 |
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2022 Journal Article Identifying gene expression profiles associated with neurogenesis and inflammation in the human subependymal zone from development through agingBitar, Mainá, Weissleder, Christin, North, Hayley F., Clearwater, Misaki S., Zalucki, Oressia, Halliday, Glenda M., Webster, Maree J., Piper, Michael, Weickert, Cynthia Shannon and Barry, Guy (2022). Identifying gene expression profiles associated with neurogenesis and inflammation in the human subependymal zone from development through aging. Scientific Reports, 12 (1) 40, 40. doi: 10.1038/s41598-021-03976-4 |
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2021 Journal Article Cep55 regulation of PI3K/Akt signaling is required for neocortical development and ciliogenesisRashidieh, Behnam, Shohayeb, Belal, Bain, Amanda Louise, Fortuna, Patrick R. J., Sinha, Debottam, Burgess, Andrew, Mills, Richard, Adams, Rachael C., Lopez, J. Alejandro, Blumbergs, Peter, Finnie, John, Kalimutho, Murugan, Piper, Michael, Hudson, James Edward, Ng, Dominic C. H. and Khanna, Kum Kum (2021). Cep55 regulation of PI3K/Akt signaling is required for neocortical development and ciliogenesis. PLoS Genetics, 17 (10) e1009334, 1-31. doi: 10.1371/journal.pgen.1009334 |
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2021 Journal Article Genome-wide transcriptomic analysis of the forebrain of postnatal Slc13a4+/− miceHarvey, Tracey J., Davila, Raul Ayala, Vidovic, Diana, Sharmin, Sazia, Piper, Michael and Simmons, David G. (2021). Genome-wide transcriptomic analysis of the forebrain of postnatal Slc13a4+/− mice. BMC Research Notes, 14 (1) 269, 269. doi: 10.1186/s13104-021-05687-5 |
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2021 Journal Article ChIP-R: Assembling reproducible sets of ChIP-seq and ATAC-seq peaks from multiple replicatesNewell, Rhys, Pienaar, Richard, Balderson, Brad, Piper, Michael, Essebier, Alexandra and Bodén, Mikael (2021). ChIP-R: Assembling reproducible sets of ChIP-seq and ATAC-seq peaks from multiple replicates. Genomics, 113 (4), 1855-1866. doi: 10.1016/j.ygeno.2021.04.026 |
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2021 Journal Article TEAD family transcription factors in development and diseaseCurrey, Laura, Thor, Stefan and Piper, Michael (2021). TEAD family transcription factors in development and disease. Development, 148 (12) dev196675. doi: 10.1242/dev.196675 |
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2021 Journal Article Reduced adult neurogenesis is associated with increased macrophages in the subependymal zone in schizophreniaWeissleder, Christin, North, Hayley F., Bitar, Maina, Fullerton, Janice M., Sager, Rachel, Barry, Guy, Piper, Michael, Halliday, Glenda M., Webster, Maree J. and Shannon Weickert, Cynthia (2021). Reduced adult neurogenesis is associated with increased macrophages in the subependymal zone in schizophrenia. Molecular Psychiatry, 26 (11), 6880-6895. doi: 10.1038/s41380-021-01149-3 |
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2021 Journal Article Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotypeKojic, Marija, Gawda, Tomasz, Gaik, Monika, Begg, Alexander, Salerno-Kochan, Anna, Kurniawan, Nyoman D., Jones, Alun, Drożdżyk, Katarzyna, Kościelniak, Anna, Chramiec-Głąbik, Andrzej, Hediyeh-Zadeh, Soroor, Kasherman, Maria, Shim, Woo Jun, Sinniah, Enakshi, Genovesi, Laura A., Abrahamsen, Rannvá K., Fenger, Christina D., Madsen, Camilla G., Cohen, Julie S., Fatemi, Ali, Stark, Zornitza, Lunke, Sebastian, Lee, Joy, Hansen, Jonas K., Boxill, Martin F., Keren, Boris, Marey, Isabelle, Saenz, Margarita S., Brown, Kathleen ... Wainwright, Brandon J. (2021). Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype. Nature Communications, 12 (1) 2678, 2678. doi: 10.1038/s41467-021-22888-5 |
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2021 Journal Article Perineuronal net abnormalities in Slc13a4+/- mice are rescued by postnatal administration of N-acetylcysteineSharmin, Sazia, Pradhan, Jonu, Zhang, Zhe, Bellingham, Mark, Simmons, David and Piper, Michael (2021). Perineuronal net abnormalities in Slc13a4+/- mice are rescued by postnatal administration of N-acetylcysteine. Experimental Neurology, 342 113734, 1-16. doi: 10.1016/j.expneurol.2021.113734 |
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2021 Journal Article Editorial: Context-dependent regulation of neurogenesis: common themes and unique features of the neurogenic process in different model systemsLupo, Giuseppe, Piper, Michael and Zolessi, Flavio R. (2021). Editorial: Context-dependent regulation of neurogenesis: common themes and unique features of the neurogenic process in different model systems. Frontiers in Cell and Developmental Biology, 9 678475, 678475. doi: 10.3389/fcell.2021.678475 |
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2020 Journal Article Conserved epigenetic regulatory logic infers genes governing cell identityShim, Woo Jun, Sinniah, Enakshi, Xu, Jun, Vitrinel, Burcu, Alexanian, Michael, Andreoletti, Gaia, Shen, Sophie, Sun, Yuliangzi, Balderson, Brad, Boix, Carles, Peng, Guangdun, Jing, Naihe, Wang, Yuliang, Kellis, Manolis, Tam, Patrick P L, Smith, Aaron, Piper, Michael, Christiaen, Lionel, Nguyen, Quan, Bodén, Mikael and Palpant, Nathan J. (2020). Conserved epigenetic regulatory logic infers genes governing cell identity. Cell Systems, 11 (6), 625-639.e13. doi: 10.1016/j.cels.2020.11.001 |
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2020 Journal Article Missense variant contribution to USP9X-female syndromeJolly, Lachlan A., Parnell, Euan, Gardner, Alison E., Corbett, Mark A., Pérez-Jurado, Luis A., Shaw, Marie, Lesca, Gaetan, Keegan, Catherine, Schneider, Michael C., Griffin, Emily, Maier, Felicitas, Kiss, Courtney, Guerin, Andrea, Crosby, Kathleen, Rosenbaum, Kenneth, Tanpaiboon, Pranoot, Whalen, Sandra, Keren, Boris, McCarrier, Julie, Basel, Donald, Sadedin, Simon, White, Susan M., Delatycki, Martin B., Kleefstra, Tjitske, Küry, Sébastien, Brusco, Alfredo, Sukarova-Angelovska, Elena, Trajkova, Slavica, Yoon, Sehoun ... Gecz, Jozef (2020). Missense variant contribution to USP9X-female syndrome. npj Genomic Medicine, 5 (1) 53, 1-11. doi: 10.1038/s41525-020-00162-9 |
