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2017 Journal Article The effect of hydronium ions on the structure of phospholipid membranesDeplazes, Evelyne, Poger, David, Cornell, Bruce and Cranfield, Charles G. (2017). The effect of hydronium ions on the structure of phospholipid membranes. Physical Chemistry Chemical Physics, 20 (1), 357-366. doi: 10.1039/c7cp06776c |
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2017 Journal Article Spider peptide toxin HwTx-IV engineered to bind to lipid membranes has an increased inhibitory potency at human voltage-gated sodium channel hNa(V)1.7 (vol 1859, pg 835, 2017)Agwa, Akello J., Lawrence, Nicole, Deplazes, Evelyne, Cheneval, Olivier, Chen, Rachel M., Craik, David J., Schroeder, Christina I. and Henriques, Sonia T. (2017). Spider peptide toxin HwTx-IV engineered to bind to lipid membranes has an increased inhibitory potency at human voltage-gated sodium channel hNa(V)1.7 (vol 1859, pg 835, 2017). Biochimica Et Biophysica Acta-Biomembranes, 1859 (11), 2277-2277. doi: 10.1016/j.bbamem.2017.08.008 |
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2017 Journal Article A potential new, stable state of the E-cadherin strand-swapped dimer in solutionSchumann-Gillett, Alexandra, Mark, Alan E., Deplazes, Evelyne and O'Mara, Megan L. (2017). A potential new, stable state of the E-cadherin strand-swapped dimer in solution. European Biophysics Journal, 47 (1), 59-67. doi: 10.1007/s00249-017-1229-3 |
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2017 Journal Article Spider peptide toxin HwTx-IV engineered to bind to lipid membranes has an increased inhibitory potency at human voltage-gated sodium channel hNaV1.7Agwa, Akello J., Lawrence, Nicole, Deplazes, Evelyne, Cheneval, Olivier, Chen, Rachel M., Craik, David J., Schroeder, Christina I. and Henriques, Sónia T. (2017). Spider peptide toxin HwTx-IV engineered to bind to lipid membranes has an increased inhibitory potency at human voltage-gated sodium channel hNaV1.7. Biochimica et Biophysica Acta. Biomembranes, 1859 (5), 835-844. doi: 10.1016/j.bbamem.2017.01.020 |
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2017 Journal Article Molecular simulations of disulfide-rich venom peptides with ion channels and membranesDeplazes, Evelyne (2017). Molecular simulations of disulfide-rich venom peptides with ion channels and membranes. Molecules, 22 (3) 362, 362. doi: 10.3390/molecules22030362 |
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2016 Journal Article Interaction of tarantula venom peptide ProTx-II with lipid membranes is a prerequisite for its inhibition of human voltage-gated sodium channel NaV1.7Troeira Henriques, Sonia, Deplazes, Evelyne, Lawrence, Nicole, Cheneval, Olivier, Chaousis, Stephanie, Inserra, Marco, Thongyoo, Panumart, King, Glenn F., Mark, Alan E., Vetter, Irina, Craik, David J. and Schroeder, Christina Ingrid (2016). Interaction of tarantula venom peptide ProTx-II with lipid membranes is a prerequisite for its inhibition of human voltage-gated sodium channel NaV1.7. The Journal of Biological Chemistry, 291 (33), 17049-17065. doi: 10.1074/jbc.M116.729095 |
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2016 Journal Article Membrane-binding properties of gating modifier and pore-blocking toxins: membrane interaction is not a prerequisite for modification of channel gatingDeplazes, Evelyne, Troeira Henriques, Sonia, Smith, Jennifer J., King, Glenn F., Craik, David J., Mark, Alan E. and Schroeder, Christina I. (2016). Membrane-binding properties of gating modifier and pore-blocking toxins: membrane interaction is not a prerequisite for modification of channel gating. Biochimica et Biophysica Acta - Biomembranes, 1858 (4), 872-882. doi: 10.1016/j.bbamem.2016.02.002 |
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2016 Journal Article Combination of Ambiguous and Unambiguous Data in the Restraint-driven Docking of Flexible Peptides with HADDOCK: The Binding of the Spider Toxin PcTx1 to the Acid Sensing Ion Channel (ASIC) 1aDeplazes, Evelyne, Davies, Josephine, Bonvin, Alexandre M. J. J., King, Glenn F. and Mark, Alan E. (2016). Combination of Ambiguous and Unambiguous Data in the Restraint-driven Docking of Flexible Peptides with HADDOCK: The Binding of the Spider Toxin PcTx1 to the Acid Sensing Ion Channel (ASIC) 1a. Journal of Chemical Information and Modeling, 56 (1), 127-138. doi: 10.1021/acs.jcim.5b00529 |
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2015 Journal Article Characterizing the conformational dynamics of metal-free PsaA usingmolecular dynamics simulations and electron paramagnetic resonance spectroscopyDeplazes, Evelyne, Begg, Stephanie L., van Wonderen, Jessica H., Campbell, Rebecca, Kobe, Bostjan, Paton, James C., MacMillan, Fraser, McDevitt, Christopher A. and O'Mara, Megan L. (2015). Characterizing the conformational dynamics of metal-free PsaA usingmolecular dynamics simulations and electron paramagnetic resonance spectroscopy. Biophysical Chemistry, 207, 51-60. doi: 10.1016/j.bpc.2015.08.004 |
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2015 Journal Article Molecular dynamics and functional studies define a hot spot of crystal contacts essential for PcTx1 inhibition of acid-sensing ion channel 1aSaez, Natalie J., Deplazes, Evelyne, Cristofori-Armstrong, Ben, Chassagnon, Irene R., Lin, Xiaozhen, Mobli, Mehdi, Mark, Alan E., Rash, Lachlan D. and King, Glenn F. (2015). Molecular dynamics and functional studies define a hot spot of crystal contacts essential for PcTx1 inhibition of acid-sensing ion channel 1a. British Journal of Pharmacology, 172 (20), 4985-4995. doi: 10.1111/bph.13267 |
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2015 Journal Article Widespread convergence in toxin resistance by predictable molecular evolutionUjvari, Beata, Casewell, Nicholas R., Sunagar, Kartik, Arbuckle, Kevin, Wuester, Wolfgang, Lo, Nathan, O'Meally, Denis, Beckmann, Christa, King, Glenn F., Deplazes, Evelyne and Madsen, Thomas (2015). Widespread convergence in toxin resistance by predictable molecular evolution. Proceedings of the National Academy of Sciences of the United States of America, 112 (38), 11911-11916. doi: 10.1073/pnas.1511706112 |
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2015 Journal Article Comparing the Ability of Enhanced Sampling Molecular Dynamics Methods To Reproduce the Behavior of Fluorescent Labels on ProteinsWalczewska-Szewc, Katarzyna, Deplazes, Evelyne and Corry, Ben (2015). Comparing the Ability of Enhanced Sampling Molecular Dynamics Methods To Reproduce the Behavior of Fluorescent Labels on Proteins. Journal of Chemical Theory and Computation, 11 (7), 3455-3465. doi: 10.1021/acs.jctc.5b00205 |
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2014 Journal Article Bacterial mechanosensitive channels: models for studying mechanosensory transductionMartinac, Boris, Nomura, Takeshi, Chi, Gamma, Petrov, Evgeny, Rohde, Paul R., Battle, Andrew R., Foo, Alexander, Constantine, Maryrose, Rothnagel, Rosalba, Carne, Sonia, Deplazes, Evelyne, Cornell, Bruce, Cranfield, Charles G., Hankamer, Ben and Landsberg, Michael J. (2014). Bacterial mechanosensitive channels: models for studying mechanosensory transduction. Antioxidants and Redox Signaling, 20 (6), 952-969. doi: 10.1089/ars.2013.5471 |
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2012 Journal Article Structural investigation of MscL gating using experimental data and coarse grained MD simulationsDeplazes, Evelyne, Louhivuori, Martti, Jayatilaka, Dylan, Marrink, Siewert J. and Corry, Ben (2012). Structural investigation of MscL gating using experimental data and coarse grained MD simulations. PLoS Computational Biology, 8 (9) e1002683, e1002683. doi: 10.1371/journal.pcbi.1002683 |
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2012 Journal Article Differential effects of lipids and lyso-lipids on the mechanosensitivity of the mechanosensitive channels MscL and MscSNomura, Takeshi, Cranfield, Charles G., Deplazes, Evelyne, Owen, Dylan M., Macmillan, Alex, Battle, Andrew R., Constantine, Maryrose, Sokabe, Masahiro and Martinac, Boris (2012). Differential effects of lipids and lyso-lipids on the mechanosensitivity of the mechanosensitive channels MscL and MscS. Proceedings of the National Academy of Sciences of the United States of America, 109 (22), 8770-8775. doi: 10.1073/pnas.1200051109 |
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2012 Journal Article ExiFRET: Flexible tool for understanding FRET in complex geometriesDeplazes, Evelyne, Jayatilaka, Dylan and Corry, Ben (2012). ExiFRET: Flexible tool for understanding FRET in complex geometries. Journal of Biomedical Optics, 17 (1) 011005, 011005.1-011005.11. doi: 10.1117/1.JBO.17.1.011005 |
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2011 Journal Article Testing the use of molecular dynamics to simulate fluorophore motions and FRETDeplazes, Evelyne, Jayatilaka, Dylan and Corry, Ben (2011). Testing the use of molecular dynamics to simulate fluorophore motions and FRET. Physical Chemistry Chemical Physics, 13 (23), 11045-11054. doi: 10.1039/c1cp20447e |
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2008 Journal Article Resolutions of the Coulomb operatorVarganov, Sergey A., Gilbert, Andrew T. B., Deplazes, Evelyne and Gill, Peter M. W. (2008). Resolutions of the Coulomb operator. Journal of Chemical Physics, 128 (20) 201104, 201104.1-201104.4. doi: 10.1063/1.2939239 |
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2008 Journal Article A combined theoretical and experimental study of the structure and vibrational absorption, vibrational circular dichroism, Raman and Raman optical activity spectra of the L-histidine zwitterionDeplazes, E., van Bronswijk, W., Zhu, F., Barron, L.D., Ma, S., Nafie, L.A. and Jalkanen, K.J. (2008). A combined theoretical and experimental study of the structure and vibrational absorption, vibrational circular dichroism, Raman and Raman optical activity spectra of the L-histidine zwitterion. Theoretical Chemistry Accounts, 119 (1-3), 155-176. doi: 10.1007/s00214-007-0276-8 |
