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2025 Journal Article SCGC : Self-supervised contrastive graph clusteringKulatilleke, Gayan K., Portmann, Marius and Chandra, Shekhar S. (2025). SCGC : Self-supervised contrastive graph clustering. Neurocomputing, 611 128629, 128629. doi: 10.1016/j.neucom.2024.128629 |
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2024 Journal Article An automated and robust tool for musculoskeletal and finite element modeling of the knee jointEsrafilian, Amir, Chandra, Shekhar S, Gatti, Anthony A, Nissi, Mikko, Mustonen, Anne-Mari, Saisanen, Laura, Reijonen, Jusa, Nieminen, Petteri, Julkunen, Petro, Toyras, Juha, Saxby, David J, Lloyd, David G and Korhonen, Rami K (2024). An automated and robust tool for musculoskeletal and finite element modeling of the knee joint. IEEE Transactions on Biomedical Engineering, 72 (1), 1-13. doi: 10.1109/tbme.2024.3438272 |
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2024 Journal Article Automated Detection of Pigmented Iris Freckles using a Deep Neural Network for Cutaneous Melanoma RiskNaranpanawa, Nathasha, Jayasinghe, Dilki, Sturm, Richard A., Betz-Stablein, Brigid, Janda, Monika, Eriksson, Anders, Soyer, H. Peter and Chandra, Shekhar S. (2024). Automated Detection of Pigmented Iris Freckles using a Deep Neural Network for Cutaneous Melanoma Risk. Journal of Investigative Dermatology, 144 (11), 2602-2605.e4. doi: 10.1016/j.jid.2024.04.029 |
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2024 Journal Article Automatic segmentation of tumour and organs at risk in 3D MRI for cervical cancer radiation therapy with anatomical variationsLeung, Sze-Nung, Chandra, Shekhar S., Lim, Karen, Young, Tony, Holloway, Lois and Dowling, Jason A. (2024). Automatic segmentation of tumour and organs at risk in 3D MRI for cervical cancer radiation therapy with anatomical variations. Physical and Engineering Sciences in Medicine, 47 (3), 1-10. doi: 10.1007/s13246-024-01415-y |
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2024 Journal Article Automated anomaly-aware 3D segmentation of bones and cartilages in knee MR images from the Osteoarthritis InitiativeWoo, Boyeong, Engstrom, Craig, Baresic, William, Fripp, Jurgen, Crozier, Stuart and Chandra, Shekhar S. (2024). Automated anomaly-aware 3D segmentation of bones and cartilages in knee MR images from the Osteoarthritis Initiative. Medical Image Analysis, 93 103089. doi: 10.1016/j.media.2024.103089 |
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2024 Journal Article Analysis of cam location characteristics in FAI syndrome patients from 3D MR images demonstrates sex‐specific differencesBugeja, Jessica M., Xia, Ying, Chandra, Shekhar S., Murphy, Nicholas J., Crozier, Stuart, Hunter, David J., Fripp, Jurgen and Engstrom, Craig (2024). Analysis of cam location characteristics in FAI syndrome patients from 3D MR images demonstrates sex‐specific differences. Journal of Orthopaedic Research, 42 (2), 385-394. doi: 10.1002/jor.25674 |
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2024 Journal Article GrainPointNet: a deep-learning framework for non-invasive sorghum panicle grain count phenotypingJames, Chrisbin, Smith, Daniel, He, Weigao, Chandra, Shekhar S. and Chapman, Scott C. (2024). GrainPointNet: a deep-learning framework for non-invasive sorghum panicle grain count phenotyping. Computers and Electronics in Agriculture, 217 108485, 108485. doi: 10.1016/j.compag.2023.108485 |
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2024 Journal Article AliasNet: Alias artefact suppression network for accelerated phase-encode MRIBran Lorenzana, Marlon, Chandra, Shekhar S. and Liu, Feng (2024). AliasNet: Alias artefact suppression network for accelerated phase-encode MRI. Magnetic Resonance Imaging, 105, 17-28. doi: 10.1016/j.mri.2023.10.001 |
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2024 Journal Article Multi-modal traumatic brain injury prognosis via structure-aware field-wise learningZhang, Lu, Li, Zhibin, Chandra, Shekhar S. and Nasrallah, Fatima (2024). Multi-modal traumatic brain injury prognosis via structure-aware field-wise learning. IEEE Transactions on Knowledge and Data Engineering, 36 (8), 1-12. doi: 10.1109/tkde.2024.3364385 |
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2023 Journal Article Efficient block contrastive learning via parameter-free meta-node approximationKulatilleke, Gayan K., Portmann, Marius and Chandra, Shekhar S. (2023). Efficient block contrastive learning via parameter-free meta-node approximation. Neurocomputing, 561 126850, 126850. doi: 10.1016/j.neucom.2023.126850 |
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2023 Journal Article Non-separable two-dimensional Hadamard transform via a discrete Hadamard slice theoremLorenzana, Marlon Bran and Chandra, Shekhar S. (2023). Non-separable two-dimensional Hadamard transform via a discrete Hadamard slice theorem. IEEE Signal Processing Letters, 30 (99), 1237-1241. doi: 10.1109/lsp.2023.3311349 |
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2023 Journal Article An unsupervised deep learning-based image translation method for retrospective motion correction of high resolution kidney MRIMoinian, Shahrzad, Kurniawan, Nyoman D., Chandra, Shekhar S., Vegh, Viktor and Reutens, David C. (2023). An unsupervised deep learning-based image translation method for retrospective motion correction of high resolution kidney MRI. Intelligence-Based Medicine, 8 100108, 1-15. doi: 10.1016/j.ibmed.2023.100108 |
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2023 Journal Article Cascaded multi-modal mixing transformers for Alzheimer’s disease classification with incomplete dataLiu, Linfeng, Liu, Siyu, Zhang, Lu, To, Xuan Vinh, Nasrallah, Fatima and Chandra, Shekhar S. (2023). Cascaded multi-modal mixing transformers for Alzheimer’s disease classification with incomplete data. NeuroImage, 277 120267, 120267. doi: 10.1016/j.neuroimage.2023.120267 |
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2023 Journal Article PREdiction and Diagnosis using Imaging and Clinical biomarkers Trial in Traumatic Brain Injury (PREDICT-TBI) study protocol: an observational, prospective, multicentre cohort study for the prediction of outcome in moderate-to-severe TBINasrallah, Fatima, Bellapart, Judith, Walsham, James, Jacobson, Esther, To, Xuan Vinh, Manzanero, Silvia, Brown, Nathan, Meyer, Jason, Stuart, Janine, Evans, Tracey, Chandra, Shekhar S., Ross, Jason, Campbell, Lewis, Senthuran, Siva, Newcombe, Virginia, McCullough, James, Fleming, Jennifer, Pollard, Clifford and Reade, Michael (2023). PREdiction and Diagnosis using Imaging and Clinical biomarkers Trial in Traumatic Brain Injury (PREDICT-TBI) study protocol: an observational, prospective, multicentre cohort study for the prediction of outcome in moderate-to-severe TBI. BMJ Open, 13 (4) e067740, 1-9. doi: 10.1136/bmjopen-2022-067740 |
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2022 Journal Article CAN3D: Fast 3D medical image segmentation via compact context aggregationDai, Wei, Woo, Boyeong, Liu, Siyu, Marques, Matthew, Engstrom, Craig, Greer, Peter B., Crozier, Stuart, Dowling, Jason A. and Chandra, Shekhar S. (2022). CAN3D: Fast 3D medical image segmentation via compact context aggregation. Medical Image Analysis, 82 102562, 1-17. doi: 10.1016/j.media.2022.102562 |
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2022 Journal Article Automated 3D analysis of clinical magnetic resonance images demonstrates significant reductions in cam morphology following arthroscopic intervention in contrast to physiotherapyBugeja, Jessica M., Xia, Ying, Chandra, Shekhar S., Murphy, Nicholas J., Eyles, Jillian, Spiers, Libby, Crozier, Stuart, Hunter, David J., Fripp, Jurgen and Engstrom, Craig (2022). Automated 3D analysis of clinical magnetic resonance images demonstrates significant reductions in cam morphology following arthroscopic intervention in contrast to physiotherapy. Arthroscopy, Sports Medicine, and Rehabilitation, 4 (4), e1353-e1362. doi: 10.1016/j.asmr.2022.04.020 |
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2022 Journal Article Deep neural networks predict the need for CT in pediatric mild traumatic brain injury: a corroboration of the PECARN ruleEllethy, Hanem, Chandra, Shekhar S. and Nasrallah, Fatima A. (2022). Deep neural networks predict the need for CT in pediatric mild traumatic brain injury: a corroboration of the PECARN rule. Journal of the American College of Radiology, 19 (6), 769-778. doi: 10.1016/j.jacr.2022.02.024 |
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2022 Journal Article Automated volumetric and statistical shape assessment of cam-type morphology of the femoral head-neck region from clinical 3D magnetic resonance imagesBugeja, Jessica M., Xia, Ying, Chandra, Shekhar S., Murphy, Nicholas J., Eyles, Jillian, Spiers, Libby, Crozier, Stuart, Hunter, David J., Fripp, Jurgen and Engstrom, Craig (2022). Automated volumetric and statistical shape assessment of cam-type morphology of the femoral head-neck region from clinical 3D magnetic resonance images. Quantitative Imaging in Medicine and Surgery, 12 (10), 4941. doi: 10.21037/qims-22-332 |
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2021 Journal Article Automated analysis of immediate reliability of T2 and T2* relaxation times of hip joint cartilage from 3 T MR examinationsBugeja, Jessica M., Chandra, Shekhar S., Neubert, Aleš, Fripp, Jurgen, Lockard, Carly A., Ho, Charles P., Crozier, Stuart and Engstrom, Craig (2021). Automated analysis of immediate reliability of T2 and T2* relaxation times of hip joint cartilage from 3 T MR examinations. Magnetic Resonance Imaging, 82, 42-54. doi: 10.1016/j.mri.2021.06.008 |
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2021 Journal Article Deep learning in magnetic resonance image reconstructionChandra, Shekhar S., Bran Lorenzana, Marlon, Liu, Xinwen, Liu, Siyu, Bollmann, Steffen and Crozier, Stuart (2021). Deep learning in magnetic resonance image reconstruction. Journal of Medical Imaging and Radiation Oncology, 65 (5) 1754-9485.13276, 564-577. doi: 10.1111/1754-9485.13276 |
