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2022 Journal Article CAN3D: Fast 3D medical image segmentation via compact context aggregationDai, Wei, Woo, Boyeong, Liu, Siyu, Marques, Matthew, Engstrom, Craig, Greer, Peter B., Crozier, Stuart, Dowling, Jason A. and Chandra, Shekhar S. (2022). CAN3D: Fast 3D medical image segmentation via compact context aggregation. Medical Image Analysis, 82 102562, 1-17. doi: 10.1016/j.media.2022.102562 |
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2021 Journal Article The application of statistical shape modeling for lung morphology in aerosol inhalation dosimetryXi, Jinxiang, Talaat, Mohamed, Si, Xiuhua April and Chandra, Shekhar (2021). The application of statistical shape modeling for lung morphology in aerosol inhalation dosimetry. Journal of Aerosol Science, 151 105623, 105623. doi: 10.1016/j.jaerosci.2020.105623 |
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2021 Journal Article Discrete element and finite element methods provide similar estimations for hip joint contact mechanics during walking gaitLi, Mao, Venäläinen, Mikko S., Chandra, Shekhar S., Patel, Rushabh, Fripp, Jurgen, Engstrom, Craig, Korhonen, Rami K., Töyräs, Juha and Crozier, Stuart (2021). Discrete element and finite element methods provide similar estimations for hip joint contact mechanics during walking gait. Journal of Biomechanics, 115 110163, 1-11. doi: 10.1016/j.jbiomech.2020.110163 |
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2020 Conference Publication Fully automatic computer-aided mass detection and segmentation via pseudo-color mammograms and Mask R-CNNMin, Hang, Wilson, Devin, Huang, Yinhuang, Liu, Siyu, Crozier, Stuart, Bradley, Andrew P. and Chandra, Shekhar S. (2020). Fully automatic computer-aided mass detection and segmentation via pseudo-color mammograms and Mask R-CNN. 17th International Symposium on Biomedical Imaging (ISBI), Iowa City, IA, United States, 3-7 April 2020. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers (IEEE). doi: 10.1109/isbi45749.2020.9098732 |
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2018 Journal Article Local contrast-enhanced MR images via high dynamic range processingChandra, Shekhar S., Engstrom, Craig, Fripp, Jurgen, Neubert, Ales, Jin, Jin, Walker, Duncan, Salvado, Olivier, Ho, Charles and Crozier, Stuart (2018). Local contrast-enhanced MR images via high dynamic range processing. Magnetic Resonance in Medicine, 80 (3), 1206-1218. doi: 10.1002/mrm.27109 |
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2018 Journal Article Chaotic SensingChandra, Shekhar S., Ruben, Gary, Jin, Jin, Li, Mingyan, Kingston, Andrew, Svalbe, Imants and Crozier, Stuart (2018). Chaotic Sensing. IEEE Transactions on Image Processing, 27 (12) 8432445, 1-1. doi: 10.1109/TIP.2018.2864918 |
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2018 Journal Article A lightweight rapid application development framework for biomedical image analysisChandra, Shekhar S., Dowling, Jason A., Engstrom, Craig, Xia, Ying, Paproki, Anthony, Neubert, Aleš, Rivest-Hénault, David, Salvado, Olivier, Crozier, Stuart and Fripp, Jurgen (2018). A lightweight rapid application development framework for biomedical image analysis. Computer Methods and Programs in Biomedicine, 164, 193-205. doi: 10.1016/j.cmpb.2018.07.011 |
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2018 Conference Publication SPIFFY: a simpler image viewer for medical imagingSun, Jiayu and Chandra, Shekhar S. (2018). SPIFFY: a simpler image viewer for medical imaging. 4th Information Technology and Mechatronics Engineering Conference (ITOEC2018), Chongqing, China, 14-16 December 2018. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers (IEEE). doi: 10.1109/ITOEC.2018.8740656 |
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2017 Conference Publication Multi-scale mass segmentation for mammograms via cascaded random forestsMin, Hang, Chandra, Shekhar S., Dhungel, Neeraj, Crozier, Stuart and Bradley, Andrew P. (2017). Multi-scale mass segmentation for mammograms via cascaded random forests. 14th IEEE International Symposium on Biomedical Imaging, ISBI 2017, Melbourne, VIC, Australia, 18 - 21 April 2017. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/ISBI.2017.7950481 |
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2016 Journal Article Fast automated segmentation of multiple objects via spatially weighted shape learningChandra, Shekhar S., Dowling, Jason A., Greer, Peter B., Martin, Jarad, Wratten, Chris, Pichler, Peter, Fripp, Jurgen and Crozier, Stuart (2016). Fast automated segmentation of multiple objects via spatially weighted shape learning. Physics in Medicine and Biology, 61 (22), 8070-8084. doi: 10.1088/0031-9155/61/22/8070 |
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2016 Journal Article Automatic segmentation of the glenohumeral cartilages from magnetic resonance imagesNeubert, A., Yang, Z., Engstrom, C., Xia, Y., Strudwick, M. W., Chandra, S. S., Fripp, J. and Crozier, S. (2016). Automatic segmentation of the glenohumeral cartilages from magnetic resonance images. Medical Physics, 43 (10), 5370-5379. doi: 10.1118/1.4961011 |
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2016 Conference Publication Automated intervertebral disc segmentation using probabilistic shape estimation and active shape modelsNeubert, Aleš, Fripp, Jurgen, Chandra, Shekhar S., Engstrom, Craig and Crozier, Stuart (2016). Automated intervertebral disc segmentation using probabilistic shape estimation and active shape models. Third International Workshop and Challenge, CSI 2015, Munich, Germany, 5 October 2015. Switzerland: Springer. doi: 10.1007/978-3-319-41827-8_15 |
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2016 Conference Publication Finite radial reconstruction for magnetic resonance imaging: a theoretical studyChandra, Shekhar S., Archchige, Ramitha, Ruben, Gary, Jin, Jin, Li, Mingyan, Kingston, Andrew M., Svalbe, Imants and Crozier, Stuart (2016). Finite radial reconstruction for magnetic resonance imaging: a theoretical study. International Conference on Digital Image Computing: Techniques and Applications, DICTA 2016, Gold Coast, QLD, Australia, 30 November-2 December 2016. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/DICTA.2016.7797043 |
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2016 Conference Publication Incremental shape learning of 3D surfaces of the knee, data from the osteoarthritis initiativeNeubert, Ales, Naser, Ibrahim, Paproki, Anthony, Engstrom, Craig, Fripp, Jurgen, Crozier, Stuart and Chandra, Shekhar S. (2016). Incremental shape learning of 3D surfaces of the knee, data from the osteoarthritis initiative. 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), Prague, Czech Republic, 13-16 April, 2016. Piscataway, United States: IEEE Operations Center. doi: 10.1109/ISBI.2016.7493406 |
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2015 Journal Article Automatic substitute computed tomography generation and contouring for magnetic resonance imaging (MRI)-alone external beam radiation therapy from standard MRI sequencesDowling, Jason A., Sun, Jidi, Pichler, Peter, Rivest-Hénault, David, Ghose, Soumya, Richardson, Haylea, Wratten, Chris, Martin, Jarad, Arm, Jameen, Best, Leah, Chandra, Shekhar S., Fripp, Jurgen, Menk, Frederick W. and Greer, Peter B. (2015). Automatic substitute computed tomography generation and contouring for magnetic resonance imaging (MRI)-alone external beam radiation therapy from standard MRI sequences. International Journal of Radiation Oncology Biology Physics, 93 (5), 1144-1153. doi: 10.1016/j.ijrobp.2015.08.045 |
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2015 Journal Article Automated 3D quantitative assessment and measurement of alpha angles from the femoral head-neck junction using MR imagingXia, Ying, Fripp, Jurgen, Chandra, Shekhar S., Walker, Duncan, Crozier, Stuart and Engstrom, Craig M. (2015). Automated 3D quantitative assessment and measurement of alpha angles from the femoral head-neck junction using MR imaging. Physics in Medicine and Biology, 60 (19), 7601-7616. doi: 10.1088/0031-9155/60/19/7601 |
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2015 Journal Article Automated analysis of hip joint cartilage combining MR T2 and three-dimensional fast-spin-echo imagesChandra, Shekhar S., Surowiec, Rachel, Ho, Charles, Xia, Ying, Engstrom, Craig M., Crozier, Stuart and Fripp, Jurgen (2015). Automated analysis of hip joint cartilage combining MR T2 and three-dimensional fast-spin-echo images. Magnetic Resonance in Medicine, 75 (1), 403-413. doi: 10.1002/mrm.25598 |
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2015 Journal Article Automatic bone segmentation and bone-cartilage interface extraction for the shoulder joint from magnetic resonance imagesYang, Zhengyi, Fripp, Jurgen, Chandra, Shekhar S., Neubert, Ales, Xia, Ying, Strudwick, Mark, Paproki, Anthony, Engstrom, Craig and Crozier, Stuart (2015). Automatic bone segmentation and bone-cartilage interface extraction for the shoulder joint from magnetic resonance images. Physics in Medicine and Biology, 60 (4), 1441-1459. doi: 10.1088/0031-9155/60/4/1441 |
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2015 Conference Publication Shape reconstruction using EM-ICP mesh registration and robust statistical shape modelsNeubert, Ales, Chandra, Shekhar S., Engstrom, Craig, Fripp, Jurgen and Crozier, Stuart (2015). Shape reconstruction using EM-ICP mesh registration and robust statistical shape models. Symposium on Statistical Shape Models Applications, Delemont, Switzerland, 30 September - 2 October, 2015. |
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2014 Journal Article Automatic hip cartilage segmentation from 3D MR images using arc-weighted graph searchingXia, Ying, Chandra, Shekhar S., Engstrom, Craig M., Strudwick, Mark W., Crozier, Stuart and Fripp, Jurgen (2014). Automatic hip cartilage segmentation from 3D MR images using arc-weighted graph searching. Physics In Medicine And Biology, 59 (23), 7245-7266. doi: 10.1088/0031-9155/59/23/7245 |
