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2018

Journal Article

Differential response of wheat genotypes to heat stress during grain filling

Rangan, Parimalan, Furtado, Agnelo and Henry, Robert (2018). Differential response of wheat genotypes to heat stress during grain filling. Experimental Agriculture, 55 (5), 818-827. doi: 10.1017/s0014479718000406

Differential response of wheat genotypes to heat stress during grain filling

2018

Journal Article

Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selection

Wright, G. C., Borgognone, M. G., Connor, D. J.O., Rachaputi, R. C.N., Henry, R. J., Furtado, A., Anglin, N. L. and Freischfresser, D. B. (2018). Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selection. Crop & Pasture Science, 69 (12), 1237-1250. doi: 10.1071/CP18156

Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selection

2018

Journal Article

Origin and evolution of qingke barley in Tibet

Zeng, Xingquan, Guo, Yu, Xu, Qijun, Mascher, Martin, Guo, Ganggang, Li, Shuaicheng, Mao, Likai, Liu, Qingfeng, Xia, Zhanfeng, Zhou, Juhong, Yuan, Hongjun, Tai, Shuaishuai, Wang, Yulin, Wei, Zexiu, Song, Li, Zha, Sang, Li, Shiming, Tang, Yawei, Bai, Lijun, Zhuang, Zhenhua, He, Weiming, Zhao, Shancen, Fang, Xiaodong, Gao, Qiang, Yin, Ye, Wang, Jian, Yang, Huanming, Zhang, Jing, Henry, Robert J. ... Tashi, Nyima (2018). Origin and evolution of qingke barley in Tibet. Nature Communications, 9 (1) 5433, 5433. doi: 10.1038/s41467-018-07920-5

Origin and evolution of qingke barley in Tibet

2018

Journal Article

Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos ... Wing, Rod A. (2018). Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 (11), 1618-1618. doi: 10.1038/s41588-018-0261-2

Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

2018

Journal Article

SNP in the Coffea arabica genome associated with coffee quality

Tran, Hue T. M., Furtado, Agnelo, Vargas, Carlos Alberto Cordero, Smyth, Heather, Lee, L. Slade and Henry, Robert (2018). SNP in the Coffea arabica genome associated with coffee quality. Tree Genetics & Genomes, 14 (5) 72. doi: 10.1007/s11295-018-1282-9

SNP in the Coffea arabica genome associated with coffee quality

2018

Journal Article

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

Kasirajan, Lakshmi, Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2018). Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content. Scientific Reports, 8 (1) 11612, 11612. doi: 10.1038/s41598-018-30033-4

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

2018

Journal Article

The coffee bean transcriptome explains the accumulation of the major bean components through ripening

Cheng, Bing, Furtado, Agnelo and Henry, Robert J. (2018). The coffee bean transcriptome explains the accumulation of the major bean components through ripening. Scientific Reports, 8 (1) 11414, 11414. doi: 10.1038/s41598-018-29842-4

The coffee bean transcriptome explains the accumulation of the major bean components through ripening

2018

Journal Article

A mosaic monoploid reference sequence for the highly complex genome of sugarcane

Garsmeur, Olivier, Droc, Gaetan, Antonise, Rudie, Grimwood, Jane, Potier, Bernard, Aitken, Karen, Jenkins, Jerry, Martin, Guillaume, Charron, Carine, Hervouet, Catherine, Costet, Laurent, Yahiaoui, Nabila, Healey, Adam, Sims, David, Cherukuri, Yesesri, Sreedasyam, Avinash, Kilian, Andrzej, Chan, Agnes, Van Sluys, Marie-Anne, Swaminathan, Kankshita, Town, Christopher, Bergès, Hélène, Simmons, Blake, Glaszmann, Jean Christophe, van der Vossen, Edwin, Henry, Robert, Schmutz, Jeremy and D'Hont, Angélique (2018). A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nature Communications, 9 (1) 2638, 2638. doi: 10.1038/s41467-018-05051-5

A mosaic monoploid reference sequence for the highly complex genome of sugarcane

2018

Journal Article

Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation

Henry, Robert J., Furtado, Agnelo and Rangan, Parimalan (2018). Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation. Current Opinion in Plant Biology, 45 (Pt B), 231-236. doi: 10.1016/j.pbi.2018.05.002

Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation

2018

Journal Article

The challenge of analyzing the sugarcane genome

Thirugnanasambandam, Prathima P., Hoang, Nam V. and Henry, Robert J. (2018). The challenge of analyzing the sugarcane genome. Frontiers in Plant Science, 9 616, 616. doi: 10.3389/fpls.2018.00616

The challenge of analyzing the sugarcane genome

2018

Journal Article

Chloroplast phylogeny of AA genome rice species

Mohammad Moner, Ali, Furtado, Agnelo and Henry, Robert J (2018). Chloroplast phylogeny of AA genome rice species. Molecular Phylogenetics and Evolution, 127, 475-487. doi: 10.1016/j.ympev.2018.05.002

Chloroplast phylogeny of AA genome rice species

2018

Journal Article

Role of genomics in promoting the utilization of plant genetic resources in genebanks

Wambugu, Peterson W., Ndjiondjop, Marie-Noelle and Henry, Robert J. (2018). Role of genomics in promoting the utilization of plant genetic resources in genebanks. Briefings in Functional Genomics, 17 (3), 198-206. doi: 10.1093/bfgp/ely014

Role of genomics in promoting the utilization of plant genetic resources in genebanks

2018

Journal Article

Diversity and evolution of rice progenitors in Australia

Moner, Ali M., Furtado, Agnelo, Chivers, Ian, Fox, Glen, Crayn, Darren and Henry, Robert J. (2018). Diversity and evolution of rice progenitors in Australia. Ecology and Evolution, 8 (8), 4360-4366. doi: 10.1002/ece3.3989

Diversity and evolution of rice progenitors in Australia

2018

Journal Article

There's yellow, and then there's yellow-which one is YCS?

Marquardt, Annelie, Wathen-Dunn, Kate, Henry, Robert J. and Botha, Frederik C. (2018). There's yellow, and then there's yellow-which one is YCS?. International Sugar Journal, 120 (1432), 304-310.

There's yellow, and then there's yellow-which one is YCS?

2018

Journal Article

De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts

Hoang, Nam V., Furtado, Agnelo, Thirugnanasambandam, Prathima P., Botha, Frederik C. and Henry, Robert J. (2018). De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts. Heliyon, 4 (3) e00583, e00583. doi: 10.1016/j.heliyon.2018.e00583

De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts

2018

Journal Article

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus

Butler, Jakob B., Freeman, Jules S., Potts, Brad M., Vaillancourt, René E., Grattapaglia, Dario, Silva-Junior, Orzenil B., Simmons, Blake A., Healey, Adam L., Schmutz, Jeremy, Barry, Kerrie W., Lee, David J., Henry, Robert J., King, Graham J., Baten, Abdul and Shepherd, Mervyn (2018). Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus. Heredity, 121 (1), 1-18. doi: 10.1038/s41437-018-0058-1

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus

2018

Journal Article

Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content

Tran, Hue T. M., Ramaraj, Thiruvarangan, Furtado, Agnelo, Lee, L. Slade and Henry, Robert J. (2018). Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content. Plant Biotechnology Journal, 16 (10), 1756-1766. doi: 10.1111/pbi.12912

Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content

2018

Journal Article

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos ... Wing, Rod A. (2018). Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 (2), 285-296. doi: 10.1038/s41588-018-0040-0

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

2018

Journal Article

Filters of floristic exchange: How traits and climate shape the rain forest invasion of Sahul from Sunda

Yap, Jia-Yee S., Rossetto, Maurizio, Costion, Craig, Crayn, Darren, Kooyman, Robert M., Richardson, James and Henry, Robert (2018). Filters of floristic exchange: How traits and climate shape the rain forest invasion of Sahul from Sunda. Journal of Biogeography, 45 (4), 838-847. doi: 10.1111/jbi.13143

Filters of floristic exchange: How traits and climate shape the rain forest invasion of Sahul from Sunda

2018

Journal Article

Evidence of inter-sectional chloroplast capture in Corymbia among sections Torellianae and Maculatae

Healey, Adam, Lee, David J., Furtado, Agnelo and Henry, Robert J. (2018). Evidence of inter-sectional chloroplast capture in Corymbia among sections Torellianae and Maculatae. Australian Journal of Botany, 66 (5), 369-378. doi: 10.1071/BT18028

Evidence of inter-sectional chloroplast capture in Corymbia among sections Torellianae and Maculatae