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2025

Other Outputs

Data associated with the publication: Applying genomic and climate data to build resilient seed production areas: A pragmatic workflow for local, predictive and climate-adjusted provenancing

Dimon, Richard J., Bragg, Jason, Fahey, Patrick, van der Merwe, Marlien, Wilson, Peter D., Henry, Robert and Rossetto, Maurizio (2025). Data associated with the publication: Applying genomic and climate data to build resilient seed production areas: A pragmatic workflow for local, predictive and climate-adjusted provenancing. The University of Queensland. (Dataset) doi: 10.48610/1b70ddb

Data associated with the publication: Applying genomic and climate data to build resilient seed production areas: A pragmatic workflow for local, predictive and climate-adjusted provenancing

2025

Journal Article

Characterizing the structural variations in the genome of the mandarin variety, <scp>IrM2</scp>, induced by gamma irradiation

Nakandala, Upuli, Furtado, Agnelo, Kharabian Masouleh, Ardashir, Smith, Malcolm W., Mason, Patrick and Henry, Robert J. (2025). Characterizing the structural variations in the genome of the mandarin variety, IrM2, induced by gamma irradiation. Plant Biotechnology Journal. doi: 10.1111/pbi.70205

Characterizing the structural variations in the genome of the mandarin variety, <scp>IrM2</scp>, induced by gamma irradiation

2025

Journal Article

A Flow Cytometry Protocol for Measurement of Plant Genome Size Using Frozen Material

Soni, Abhishek, Constantin, Lena, Furtado, Agnelo and Henry, Robert J (2025). A Flow Cytometry Protocol for Measurement of Plant Genome Size Using Frozen Material. Applied Biosciences, 4 (2) 28, 28-2. doi: 10.3390/applbiosci4020028

A Flow Cytometry Protocol for Measurement of Plant Genome Size Using Frozen Material

2025

Journal Article

Genotype × Environment Effects in Three Wild Relatives of Sorghum From Australia

Myrans, Harry, Chithrarachchige, Dinithi, Henry, Robert J., Norton, Sally and Gleadow, Roslyn M. (2025). Genotype × Environment Effects in Three Wild Relatives of Sorghum From Australia. Plant-Environment Interactions, 6 (3) e70065, e70065. doi: 10.1002/pei3.70065

Genotype × Environment Effects in Three Wild Relatives of Sorghum From Australia

2025

Journal Article

Spatial omics for accelerating plant research and crop improvement

Barmukh, Rutwik, Garg, Vanika, Liu, Hao, Chitikineni, Annapurna, Xin, Liu, Henry, Robert and Varshney, Rajeev K. (2025). Spatial omics for accelerating plant research and crop improvement. Trends in Biotechnology. doi: 10.1016/j.tibtech.2025.03.007

Spatial omics for accelerating plant research and crop improvement

2025

Journal Article

Unique starch biosynthesis pathways in wild rice revealed by multi‐omics analyses

Nurmansyah, , Furtado, Agnelo, Okemo, Pauline and Henry, Robert J. (2025). Unique starch biosynthesis pathways in wild rice revealed by multi‐omics analyses. Plant Biotechnology Journal, 23 (6), 2429-2445. doi: 10.1111/pbi.70021

Unique starch biosynthesis pathways in wild rice revealed by multi‐omics analyses

2025

Journal Article

Integrated multi-omics analysis unravels the floral scent characteristics and regulation in "Hutou" multi-petal jasmine

Fang, Jingping, Zhou, Linwei, Chen, Qinchang, Wang, Jinbin, Zhuang, Ying, Lin, Shaoqing, Yan, Hansong, Zhao, Kai, Zhang, Jisen and Henry, Robert J. (2025). Integrated multi-omics analysis unravels the floral scent characteristics and regulation in "Hutou" multi-petal jasmine. Communications Biology, 8 (1) 256, 256. doi: 10.1038/s42003-025-07685-w

Integrated multi-omics analysis unravels the floral scent characteristics and regulation in "Hutou" multi-petal jasmine

2025

Journal Article

Citrus genomes: Past, present and future

Nakandala, Upuli, Furtado, Agnelo and Henry, Robert J (2025). Citrus genomes: Past, present and future. Horticulture Research, 12 (5) uhaf033, uhaf033. doi: 10.1093/hr/uhaf033

Citrus genomes: Past, present and future

2025

Journal Article

The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication

Abdullah, Muhammad, Furtado, Agnelo, Kharabian Masouleh, Ardashir, Okemo, Pauline and Henry, Robert (2025). The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication. BMC Genomics, 26 (1) 54, 1-15. doi: 10.1186/s12864-025-11246-0

The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication

2025

Book Chapter

Advances in genomics for improving coffee beverage quality

Cheng, Bing, Henry, Robert and He, Hongju (2025). Advances in genomics for improving coffee beverage quality. Advances in Botanical Research. (pp. 485-524) San Diego, CA, United States: Academic Press. doi: 10.1016/bs.abr.2024.04.007

Advances in genomics for improving coffee beverage quality

2025

Journal Article

The First International Symposium of the World Wild Rice Wiring: Conservation and Utilization of Global Wild Rice Germplasm Resources through International Cooperation

Ratnasekera, Disna, Fan, Jiayu, Henry, Robert J., Song, Beng-Kah, Wambugu, Peterson, Pusadee, Tonapha, Aung, Ohn Mar, Vilayheuang, Koukham, Zheng, Xiaoming and Qian, Qian (2025). The First International Symposium of the World Wild Rice Wiring: Conservation and Utilization of Global Wild Rice Germplasm Resources through International Cooperation. Molecular Plant, 18 (2), 167-170. doi: 10.1016/j.molp.2025.01.002

The First International Symposium of the World Wild Rice Wiring: Conservation and Utilization of Global Wild Rice Germplasm Resources through International Cooperation

2025

Journal Article

Centromeres are hotspots for chromosomal inversions and breeding traits in mango

Wilkinson, Melanie J., McLay, Kathleen, Kainer, David, Elphinstone, Cassandra, Dillon, Natalie L., Webb, Matthew, Wijesundara, Upendra K., Ali, Asjad, Bally, Ian S. E., Munyengwa, Norman, Furtado, Agnelo, Henry, Robert J., Hardner, Craig M. and Ortiz‐Barrientos, Daniel (2025). Centromeres are hotspots for chromosomal inversions and breeding traits in mango. New Phytologist, 245 (2), 899-913. doi: 10.1111/nph.20252

Centromeres are hotspots for chromosomal inversions and breeding traits in mango

2024

Other Outputs

Data Availability associated for the paper "Contraction-expansion dynamics and interregional admixture shape refugia and recolonisation processes in the Gondwana Rainforests of Australia World Heritage Area"

Dimon RJ, Yap JS, Kooyman RM, Wilson PD, Henry RJ and Rossetto M (2024). Data Availability associated for the paper "Contraction-expansion dynamics and interregional admixture shape refugia and recolonisation processes in the Gondwana Rainforests of Australia World Heritage Area". The University of Queensland. (Dataset) doi: 10.48610/611041e

Data Availability associated for the paper "Contraction-expansion dynamics and interregional admixture shape refugia and recolonisation processes in the Gondwana Rainforests of Australia World Heritage Area"

2024

Journal Article

PhyloForge: unifying micro‐ and macroevolution with comprehensive genomic signals

Wang, Ya, Dong, Wei, Liang, Yufan, Lin, Weiwei, Chen, Junhao, Henry, Robert and Chen, Fei (2024). PhyloForge: unifying micro‐ and macroevolution with comprehensive genomic signals. Molecular Ecology Resources, 25 (3) e14050, e14050. doi: 10.1111/1755-0998.14050

PhyloForge: unifying micro‐ and macroevolution with comprehensive genomic signals

2024

Journal Article

Wild rice: unlocking the future of rice breeding

Zheng, Xiaoming, Peng, Youlin, Qiao, Jiyue, Henry, Robert and Qian, Qian (2024). Wild rice: unlocking the future of rice breeding. Plant Biotechnology Journal, 22 (11), 3218-3226. doi: 10.1111/pbi.14443

Wild rice: unlocking the future of rice breeding

2024

Journal Article

Genome sequences to support conservation and breeding of Macadamia

Sharma, Priyanka, Masouleh, Ardashir Kharabian, Constantin, Lena, Topp, Bruce, Furtado, Agnelo and Henry, Robert J. (2024). Genome sequences to support conservation and breeding of Macadamia. Tropical Plants, 3 e035, 1-11. doi: 10.48130/tp-0024-0029

Genome sequences to support conservation and breeding of Macadamia

2024

Journal Article

Analysis of phylogenetic relationships in Macadamia shows evidence of extensive reticulate evolution

Manatunga, Sachini Lakmini, Furtado, Agnelo, Topp, Bruce, Alam, Mobashwer, Mason, Patrick J., Kharabian-Masouleh, Ardashir and Henry, Robert J. (2024). Analysis of phylogenetic relationships in Macadamia shows evidence of extensive reticulate evolution. Frontiers in Plant Science, 15 1394244, 1394244. doi: 10.3389/fpls.2024.1394244

Analysis of phylogenetic relationships in Macadamia shows evidence of extensive reticulate evolution

2024

Journal Article

The genomes of Australian wild limes

Nakandala, Upuli, Furtado, Agnelo, Kharabian Masouleh, Ardashir, Smith, Malcolm W., Mason, Patrick, Williams, Darren C. and Henry, Robert J. (2024). The genomes of Australian wild limes. Plant Molecular Biology, 114 (5) 102, 102. doi: 10.1007/s11103-024-01502-4

The genomes of Australian wild limes

2024

Journal Article

Cytoplasmic genomes of Jasminum sambac reveal divergent sub-mitogenomic conformations and a large nuclear chloroplast-derived insertion

Fang, Jingping, Lin, Aiting, Yan, Hansong, Feng, Liqing, Lin, Shaoqing, Mason, Patrick, Zhou, Linwei, Xu, Xiuming, Zhao, Kai, Huang, Yongji and Henry, Robert J. (2024). Cytoplasmic genomes of Jasminum sambac reveal divergent sub-mitogenomic conformations and a large nuclear chloroplast-derived insertion. BMC Plant Biology, 24 (1) 861, 861. doi: 10.1186/s12870-024-05557-9

Cytoplasmic genomes of Jasminum sambac reveal divergent sub-mitogenomic conformations and a large nuclear chloroplast-derived insertion

2024

Journal Article

Harnessing the Power of an Extensive EMS‐Induced Sorghum Population for Rapid Crop Improvement

Mason, Patrick John, Blaakmeer, Anko, Furtado, Agnelo, Stuart, Peter Norman, Nomula, Rajesh, Bjarnholt, Nanna, Sørensen, Mette, Koleva, Donka Teneva, Pedas, Pai Rosager, Knudsen, Søren, Møller, Birger Lindberg, Skadhauge, Birgitte and Henry, Robert James (2024). Harnessing the Power of an Extensive EMS‐Induced Sorghum Population for Rapid Crop Improvement. Physiologia Plantarum, 176 (4) e14449, 1-9. doi: 10.1111/ppl.14449

Harnessing the Power of an Extensive EMS‐Induced Sorghum Population for Rapid Crop Improvement