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2024

Journal Article

Advancements in balancing glucosinolate production in plants to deliver effective defense and promote human health

Cheng, Bing, Ran, Rui, Qu, Yanyan, Verkerk, Ruud, Henry, Robert, Dekker, Matthijs and He, Hongju (2024). Advancements in balancing glucosinolate production in plants to deliver effective defense and promote human health. Agriculture Communications, 2 (2) 100040. doi: 10.1016/j.agrcom.2024.100040

Advancements in balancing glucosinolate production in plants to deliver effective defense and promote human health

2024

Journal Article

A chromosome‐level genome of mango exclusively from long‐read sequence data

Wijesundara, Upendra Kumari, Masouleh, Ardashir Kharabian, Furtado, Agnelo, Dillon, Natalie L. and Henry, Robert J. (2024). A chromosome‐level genome of mango exclusively from long‐read sequence data. The Plant Genome, 17 (2) e20441, 1-13. doi: 10.1002/tpg2.20441

A chromosome‐level genome of mango exclusively from long‐read sequence data

2024

Journal Article

Polyphenol content, antioxidant properties and trypsin inhibition activity of methanol seed extract and fractions of White Velvet bean from Vietnam

Ha, D. T., Ha, P. T. T., Tuyen, P. T., Henry, R. J., Loi, T. T. and Chi, T. N. (2024). Polyphenol content, antioxidant properties and trypsin inhibition activity of methanol seed extract and fractions of White Velvet bean from Vietnam. Legume Research, 47 (5), 772-778. doi: 10.18805/LRF-783

Polyphenol content, antioxidant properties and trypsin inhibition activity of methanol seed extract and fractions of White Velvet bean from Vietnam

2024

Journal Article

Twelve newly assembled jasmine chloroplast genomes: unveiling genomic diversity, phylogenetic relationships and evolutionary patterns among Oleaceae and Jasminum species

Xu, Xiuming, Huang, Hechen, Lin, Shaoqing, Zhou, Linwei, Yi, Yuchong, Lin, Enwen, Feng, Liqing, Zheng, Yu, Lin, Aiting, Yu, Liying, Shen, Yingjia, Henry, Robert J. and Fang, Jingping (2024). Twelve newly assembled jasmine chloroplast genomes: unveiling genomic diversity, phylogenetic relationships and evolutionary patterns among Oleaceae and Jasminum species. BMC Plant Biology, 24 (1) 331, 331. doi: 10.1186/s12870-024-04995-9

Twelve newly assembled jasmine chloroplast genomes: unveiling genomic diversity, phylogenetic relationships and evolutionary patterns among Oleaceae and Jasminum species

2024

Journal Article

Single-cell and spatial RNA sequencing reveal the spatiotemporal trajectories of fruit senescence

Li, Xin, Li, Bairu, Gu, Shaobin, Pang, Xinyue, Mason, Patrick, Yuan, Jiangfeng, Jia, Jingyu, Sun, Jiaju, Zhao, Chunyan and Henry, Robert (2024). Single-cell and spatial RNA sequencing reveal the spatiotemporal trajectories of fruit senescence. Nature Communications, 15 (1) 3108, 1-19. doi: 10.1038/s41467-024-47329-x

Single-cell and spatial RNA sequencing reveal the spatiotemporal trajectories of fruit senescence

2024

Journal Article

The genome of Citrus australasica reveals disease resistance and other species specific genes

Nakandala, Upuli, Furtado, Agnelo, Masouleh, Ardashir Kharabian, Smith, Malcolm W., Williams, Darren C. and Henry, Robert J. (2024). The genome of Citrus australasica reveals disease resistance and other species specific genes. BMC Plant Biology, 24 (1) 260, 260. doi: 10.1186/s12870-024-04988-8

The genome of Citrus australasica reveals disease resistance and other species specific genes

2024

Journal Article

Seed abortion caused by the combination of two duplicate genes in the progeny from the cross between Oryza sativa and Oryza meridionalis

Toyomoto, Daiki, Shibata, Yukika, Uemura, Masato, Taura, Satoru, Sato, Tadashi, Henry, Robert, Ishikawa, Ryuji and Ichitani, Katsuyuki (2024). Seed abortion caused by the combination of two duplicate genes in the progeny from the cross between Oryza sativa and Oryza meridionalis. Breeding Science, 74 (2) 23084, 1-13. doi: 10.1270/jsbbs.23084

Seed abortion caused by the combination of two duplicate genes in the progeny from the cross between Oryza sativa and Oryza meridionalis

2024

Journal Article

A multi-cell model for the C4 photosynthetic pathway in developing wheat grains based upon tissue-specific transcriptome data

Rangan, Parimalan, Furtado, Agnelo, Chinnusamy, Viswanathan and Henry, Robert (2024). A multi-cell model for the C4 photosynthetic pathway in developing wheat grains based upon tissue-specific transcriptome data. BioSystems, 238 105195, 105195. doi: 10.1016/j.biosystems.2024.105195

A multi-cell model for the C4 photosynthetic pathway in developing wheat grains based upon tissue-specific transcriptome data

2024

Journal Article

Global Wild Rice Germplasm Resources Conservation Alliance: world wild-rice wiring

Zheng, Xiaoming, Ratnasekera, Disna, Fan, Jiayu, Henry, Robert J., Song, Beng-Kah, Olsen, Kenneth M., Joshi, Bal Krishna, Banaticla-Hilario, Maria Celeste N., Pusadee, Tonapha, Melaku, Adane Getachew, Estelle Loko, Yêyinou Laura, Vilayheuang, Koukham, Oppong, Gavers K., Poku, Samuel Aduse, Wambugu, Peterson W., Ge, Song, Junior, Aldo Merotto, Aung, Ohn Mar, Venuprasad, Ramaiah, Kohli, Ajay, Zhou, Wenbin and Qian, Qian (2024). Global Wild Rice Germplasm Resources Conservation Alliance: world wild-rice wiring. Molecular Plant, 17 (4), 516-518. doi: 10.1016/j.molp.2024.03.001

Global Wild Rice Germplasm Resources Conservation Alliance: world wild-rice wiring

2024

Journal Article

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

Salojärvi, Jarkko, Rambani, Aditi, Yu, Zhe, Guyot, Romain, Strickler, Susan, Lepelley, Maud, Wang, Cui, Rajaraman, Sitaram, Rastas, Pasi, Zheng, Chunfang, Muñoz, Daniella Santos, Meidanis, João, Paschoal, Alexandre Rossi, Bawin, Yves, Krabbenhoft, Trevor J., Wang, Zhen Qin, Fleck, Steven J., Aussel, Rudy, Bellanger, Laurence, Charpagne, Aline, Fournier, Coralie, Kassam, Mohamed, Lefebvre, Gregory, Métairon, Sylviane, Moine, Déborah, Rigoreau, Michel, Stolte, Jens, Hamon, Perla, Couturon, Emmanuel ... Descombes, Patrick (2024). The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature Genetics, 56 (4) s41588-024-01695-w, 721-731. doi: 10.1038/s41588-024-01695-w

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

2024

Journal Article

The complex polyploid genome architecture of sugarcane

Healey, A. L., Garsmeur, O., Lovell, J. T., Shengquiang, S., Sreedasyam, A., Jenkins, J., Plott, C. B., Piperidis, N., Pompidor, N., Llaca, V., Metcalfe, C. J., Doležel, J., Cápal, P., Carlson, J. W., Hoarau, J. Y., Hervouet, C., Zini, C., Dievart, A., Lipzen, A., Williams, M., Boston, L. B., Webber, J., Keymanesh, K., Tejomurthula, S., Rajasekar, S., Suchecki, R., Furtado, A., May, G., Parakkal, P. ... D’Hont, A. (2024). The complex polyploid genome architecture of sugarcane. Nature, 628 (8009), 1-7. doi: 10.1038/s41586-024-07231-4

The complex polyploid genome architecture of sugarcane

2024

Journal Article

Genome sequencing and protein modeling unraveled the 2AP biosynthesis in Bacillus cereus DB25

Dhondge, Harshal V., Barvkar, Vitthal T., Dastager, Syed G., Dharne, Mahesh S., Rajput, Vinay, Pable, Anupama A., Henry, Robert J. and Nadaf, Altafhusain B. (2024). Genome sequencing and protein modeling unraveled the 2AP biosynthesis in Bacillus cereus DB25. International Journal of Food Microbiology, 413 110600, 1-11. doi: 10.1016/j.ijfoodmicro.2024.110600

Genome sequencing and protein modeling unraveled the 2AP biosynthesis in Bacillus cereus DB25

2024

Journal Article

Crop domestication in the Asia Pacific region: a review

Okemo, Pauline, Wijesundra, Upendra, Nakandala, Upuli, Dillon, Natalie, Chandora, Rahul, Campbell, Bradley, Smith, Millicent, Hardner, Craig, Cadorna, Charles A., Martin, Guillaume, Yahiaoui, Nabila, Garsmeur, Olivier, Pompidor, Nicolas, D’Hont, Angelique and Henry, Robert J. (2024). Crop domestication in the Asia Pacific region: a review. Agriculture Communications, 2 (1) 100032, 100032. doi: 10.1016/j.agrcom.2024.100032

Crop domestication in the Asia Pacific region: a review

2024

Journal Article

Differentially expressed genes in Jojoba (Simmondsia chinensis) when subjected to water-stress

Al-Dossary, Othman, Furtado, Agnelo, Kharabian Masouleh, Ardashir, Alsubaie, Bader, Al-Mssallem, Ibrahim and Henry, Robert J. (2024). Differentially expressed genes in Jojoba (Simmondsia chinensis) when subjected to water-stress. Current Plant Biology, 37 100311, 100311. doi: 10.1016/j.cpb.2023.100311

Differentially expressed genes in Jojoba (Simmondsia chinensis) when subjected to water-stress

2024

Book Chapter

Application of Genomics in Supporting Efficient Conservation and Utilization of Plant Genetic Resources

Wambugu, Peterson W., Ndjiondjop, Marie-Noelle, Rangan, Parimalan and Henry, Robert J. (2024). Application of Genomics in Supporting Efficient Conservation and Utilization of Plant Genetic Resources. Sustainable Development and Biodiversity. (pp. 339-361) Singapore: Springer. doi: 10.1007/978-981-99-5245-8_10

Application of Genomics in Supporting Efficient Conservation and Utilization of Plant Genetic Resources

2024

Journal Article

Genome-wide association mapping of genes for anthocyanin and flavonoid contents in Vietnamese landraces of black rice

Pham, Cuong Hung, Do, Tuyen Duc, Nguyen, Hoa Thi Lan, Hoang, Nga Thi, Tran, Trung Duc, Vu, Mi Thi Thao, Doi, Hanh Hong, Bui, Thu-Giang Thi and Henry, Robert James (2024). Genome-wide association mapping of genes for anthocyanin and flavonoid contents in Vietnamese landraces of black rice. Euphytica, 220 (1) 11. doi: 10.1007/s10681-023-03268-0

Genome-wide association mapping of genes for anthocyanin and flavonoid contents in Vietnamese landraces of black rice

2024

Journal Article

Advancing tropical plant research: how the International Conference on Tropical Plants (ICTP) drives innovation and collaboration

Zhang, Xiaolong, Wang, Wenquan, Henry, Robert J. and Chen, Fei (2024). Advancing tropical plant research: how the International Conference on Tropical Plants (ICTP) drives innovation and collaboration. Tropical Plants, 3 (1) e038. doi: 10.48130/tp-0024-0040

Advancing tropical plant research: how the International Conference on Tropical Plants (ICTP) drives innovation and collaboration

2024

Journal Article

An improved haplotype resolved genome reveals more rice genes

Abdullah, Muhammad, Furtado, Agnelo, Masouleh, Ardashir Kharabian, Okemo, Pauline and Henry, Robert (2024). An improved haplotype resolved genome reveals more rice genes. Tropical Plants, 3 (1) e009. doi: 10.48130/tp-0024-0007

An improved haplotype resolved genome reveals more rice genes

2024

Journal Article

Phylogenetic relationships in the genus Mangifera based on whole chloroplast genome and nuclear genome sequences

Wijesundara, Upendra Kumari, Furtado, Agnelo, Dillon, Natalie L., Masouleh, Ardashir Kharabian and Henry, Robert J (2024). Phylogenetic relationships in the genus Mangifera based on whole chloroplast genome and nuclear genome sequences. Tropical Plants, 3 (1) e034. doi: 10.48130/tp-0024-0031

Phylogenetic relationships in the genus Mangifera based on whole chloroplast genome and nuclear genome sequences

2023

Journal Article

Transdisciplinary approaches to understanding past Australian Aboriginal foodways

Westaway, Michael C., Wright, Nathan, Crowther, Alison, Silcock, Jennifer, Carter, Rodney, Moss, Patrick and Henry, Robert (2023). Transdisciplinary approaches to understanding past Australian Aboriginal foodways. Archaeology of Food and Foodways, 2 (1), 47-74. doi: 10.1558/aff.18161

Transdisciplinary approaches to understanding past Australian Aboriginal foodways