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2021 Journal Article Roles and opportunities for microbial anaerobic oxidation of methane in natural and engineered systemsCai, Chen, Zhang, Xueqin, Wu, Mengxiong, Liu, Tao, Lai, Chun-Yu, Frank, Joshua, He, Bingqing, Marcellin, Esteban, Guo, Jianhua, Hu, Shihu and Yuan, Zhiguo (2021). Roles and opportunities for microbial anaerobic oxidation of methane in natural and engineered systems. Energy and Environmental Science, 14 (9), 4803-4830. doi: 10.1039/d1ee00708d |
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2021 Journal Article Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic AcidTorres-Acosta, Mario A., Castaneda-Aponte, Héctor M., Mora-Galvez, Liliana M., Gil-Garzon, Monica R., Banda-Magaña, Martin P., Marcellin, Esteban, Mayolo-Deloisa, Karla and Licona-Cassani, Cuauhtemoc (2021). Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic Acid. Frontiers in Bioengineering and Biotechnology, 9 680278, 680278. doi: 10.3389/fbioe.2021.680278 |
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2021 Journal Article Network analyses predict small RNAs that might modulate gene expression in the testis and epididymis of Bos indicus bullsde Lima, Andressa O., Afonso, Juliana, Edson, Janette, Marcellin, Esteban, Palfreyman, Robin, Porto-Neto, Laercio R., Reverter, Antonio and Fortes, Marina R. S. (2021). Network analyses predict small RNAs that might modulate gene expression in the testis and epididymis of Bos indicus bulls. Frontiers in Genetics, 12 610116, 610116. doi: 10.3389/fgene.2021.610116 |
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2021 Journal Article Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, AustraliaPetersen, Ian, Paungfoo-Lonhienne, Chanyarat, Marcellin, Esteban, Nielsen, Lars Keld and Gonzalez, Axayacatl (2021). Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, Australia. Fermentation, 7 (2) 58, 1-17. doi: 10.3390/fermentation7020058 |
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2021 Journal Article Cyclic di-AMP oversight of counter-Ion osmolyte pools impacts intrinsic cefuroxime resistance in Lactococcus lactisPham, Huong Thi, Shi, Wen, Xiang, Yuwei, Foo, Su Yi, Plan, Manuel R., Courtin, Pascal, Chapot-Chartier, Marie-Pierre, Smid, Eddy J., Liang, Zhao-Xun, Marcellin, Esteban and Turner, Mark S. (2021). Cyclic di-AMP oversight of counter-Ion osmolyte pools impacts intrinsic cefuroxime resistance in Lactococcus lactis. mBio, 12 (2) e00324-21, 1-18. doi: 10.1128/mBio.00324-21 |
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2021 Journal Article multiTFA: a Python package for multi-variate thermodynamics-based flux analysisMahamkali, Vishnuvardhan, McCubbin, Tim, Beber, Moritz Emanuel, Noor, Elad, Marcellin, Esteban and Nielsen, Lars Keld (2021). multiTFA: a Python package for multi-variate thermodynamics-based flux analysis. Bioinformatics, 37 (18), 3064-3066. doi: 10.1093/bioinformatics/btab151 |
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2021 Journal Article Transcriptional control of Clostridium autoethanogenum using CRISPRiFackler, Nick, Heffernan, James, Juminaga, Alex, Doser, Damien, Nagaraju, Shilpa, Gonzalez-Garcia, R. Axayacatl, Simpson, Séan D., Marcellin, Esteban and Köpke, Michael (2021). Transcriptional control of Clostridium autoethanogenum using CRISPRi. Synthetic Biology, 6 (1) ysab008, 1-8. doi: 10.1093/synbio/ysab008 |
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2021 Journal Article Perfusion culture of Chinese Hamster Ovary cells for bioprocessing applicationsMacDonald, Michael A., Nöbel, Matthias, Roche Recinos, Dinora, Martínez, Verónica S., Schulz, Benjamin L., Howard, Christopher B., Baker, Kym, Shave, Evan, Lee, Yih Yean, Marcellin, Esteban, Mahler, Stephen, Nielsen, Lars Keld and Munro, Trent (2021). Perfusion culture of Chinese Hamster Ovary cells for bioprocessing applications. Critical Reviews in Biotechnology, 42 (7), 1-17. doi: 10.1080/07388551.2021.1998821 |
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2020 Journal Article Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetaniOrellana, Camila A., Zaragoza, Nicolas E., Licona-Cassani, Cuauhtemoc, Palfreyman, Robin W., Cowie, Nicholas, Moonen, Glenn, Moutafis, George, Power, John, Nielsen, Lars K. and Marcellin, Esteban (2020). Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani. Journal of Industrial Microbiology and Biotechnology, 47 (12), 1059-1073. doi: 10.1007/s10295-020-02330-3 |
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2020 Journal Article Enhanced metal recovery by efficient agglomeration of precipitates in an up-flow fixed-bed bioreactorLiu, Yun, Vaughan, James, Southam, Gordon, Serrano, Antonio, Marcellin, Esteban, Nancucheo, Ivan and Villa-Gomez, Denys K. (2020). Enhanced metal recovery by efficient agglomeration of precipitates in an up-flow fixed-bed bioreactor. Chemical Engineering Journal, 416 127662, 127662. doi: 10.1016/j.cej.2020.127662 |
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2020 Journal Article Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiaeEspinosa, Monica I., Gonzalez-Garcia, Ricardo A., Valgepea, Kaspar, Plan, Manuel R., Scott, Colin, Pretorius, Isak S., Marcellin, Esteban, Paulsen, Ian T. and Williams, Thomas C. (2020). Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiae. Nature Communications, 11 (1) 5564, 5564. doi: 10.1038/s41467-020-19390-9 |
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2020 Journal Article A pan-genome guided metabolic network reconstruction of five Propionibacterium species reveals extensive metabolic diversityMcCubbin, Tim, Gonzalez-Garcia, R. Axayacatl, Palfreyman, Robin W., Stowers, Chris, Nielsen, Lars K. and Marcellin, Esteban (2020). A pan-genome guided metabolic network reconstruction of five Propionibacterium species reveals extensive metabolic diversity. Genes, 11 (10) 1115, 1-26. doi: 10.3390/genes11101115 |
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2020 Journal Article ‘Omics driven discoveries of gene targets for apoptosis attenuation in CHO cellsOrellana, Camila A., Martínez, Verónica S., MacDonald, Michael A., Henry, Matthew N., Gillard, Marianne, Gray, Peter P., Nielsen, Lars K., Mahler, Stephen and Marcellin, Esteban (2020). ‘Omics driven discoveries of gene targets for apoptosis attenuation in CHO cells. Biotechnology and Bioengineering, 118 (1) bit.27548, 481-490. doi: 10.1002/bit.27548 |
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2020 Journal Article A universal and independent synthetic DNA ladder for the quantitative measurement of genomic featuresReis, Andre L. M., Deveson, Ira W., Wong, Ted, Madala, Bindu Swapna, Barker, Chris, Blackburn, James, Marcellin, Esteban and Mercer, Tim R. (2020). A universal and independent synthetic DNA ladder for the quantitative measurement of genomic features. Nature Communications, 11 (1) 3609, 3609. doi: 10.1038/s41467-020-17445-5 |
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2020 Journal Article Nickel complexation as an innovative approach for nickel-cobalt selective recovery using sulfate-reducing bacteriaLiu, Yun, Serrano, Antonio, Wyman, Valentina, Marcellin, Esteban, Southam, Gordon, Vaughan, James and Villa-Gomez, Denys (2020). Nickel complexation as an innovative approach for nickel-cobalt selective recovery using sulfate-reducing bacteria. Journal of Hazardous Materials, 402 123506, 123506. doi: 10.1016/j.jhazmat.2020.123506 |
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2020 Journal Article Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenumMahamkali, Vishnuvardhan, Valgepea, Kaspar, de Souza Pinto Lemgruber, Renato, Plan, Manuel, Tappel, Ryan, Köpke, Michael, Simpson, Séan Dennis, Nielsen, Lars Keld and Marcellin, Esteban (2020). Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenum. Proceedings of the National Academy of Sciences of the United States of America, 117 (23), 13168-13175. doi: 10.1073/pnas.1919531117 |
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2020 Journal Article Heterologous production of 6-deoxyerythronolide B in Escherichia coli through the wood werkman cycleGonzalez-Garcia, R. Axayacatl, Nielsen, Lars K. and Marcellin, Esteban (2020). Heterologous production of 6-deoxyerythronolide B in Escherichia coli through the wood werkman cycle. Metabolites, 10 (6) 228, 228. doi: 10.3390/metabo10060228 |
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2020 Journal Article Correction to: Deletion of the hypothetical protein SCO2127 of Streptomyces coelicolor allowed identification of a new regulator of actinorhodin production (Applied Microbiology and Biotechnology, (2016), 100, 21, (9229-9237), 10.1007/s00253-016-7811-2)Tierrafría, Víctor H., Licona-Cassani, Cuauhtemoc, Maldonado-Carmona, Nidia, Romero-Rodríguez, Alba, Centeno-Leija, Sara, Marcellin, Esteban, Rodríguez-Sanoja, Romina, Ruiz-Villafán, Beatriz, Nielsen, Lars K. and Sánchez, Sergio (2020). Correction to: Deletion of the hypothetical protein SCO2127 of Streptomyces coelicolor allowed identification of a new regulator of actinorhodin production (Applied Microbiology and Biotechnology, (2016), 100, 21, (9229-9237), 10.1007/s00253-016-7811-2). Applied Microbiology and Biotechnology, 104 (8), 3687-3687. doi: 10.1007/s00253-020-10499-x |
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2020 Journal Article Enhancing CO2-valorization using Clostridium autoethanogenum for sustainable fuel and chemicals productionHeffernan, James K., Valgepea, Kaspar, Lemgruber, Renato de Souza Pinto, Casini, Isabella, Plan, Manuel, Tappel, Ryan, Simpson, Sean D., Kopke, Michael, Nielsen, Lars K. and Marcellin, Esteban (2020). Enhancing CO2-valorization using Clostridium autoethanogenum for sustainable fuel and chemicals production. Frontiers in Bioengineering and Biotechnology, 8, 1-10. doi: 10.3389/fbioe.2020.00204 |
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2020 Journal Article Attenuating apoptosis in Chinese hamster ovary cells for improved biopharmaceutical productionHenry, Matthew N., MacDonald, Michael A., Orellana, Camila A., Gray, Peter P., Gillard, Marianne, Baker, Kym, Nielsen, Lars K., Marcellin, Esteban, Mahler, Stephen and Martinez, Veronica S. (2020). Attenuating apoptosis in Chinese hamster ovary cells for improved biopharmaceutical production. Biotechnology and Bioengineering, 117 (4) bit.27269, 1187-1203. doi: 10.1002/bit.27269 |
