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2021 Journal Article Ultra-deep sequencing of plasma-circulating DNA for the detection of tumor- derived mutations in patients with nonmetastatic colorectal cancerNguyen, Huu-Thinh, Luong, Bac An, Tran, Duc-Huy, Nguyen, Trong-Hieu, Ngo, Quoc Dat, Le, Linh Gia Hoang, Ho, Quoc Chuong, Nguyen, Hue-Hanh Thi, Nguyen, Cao Minh, Tran, Vu Uyen, Pham, Truong Vinh Ngoc, Le, Minh Triet, Le, Ngoc An Trinh, Le, Trung Kien, Nguyen, Thanh Luan, Pham, Hong-Anh Thi, Le, Hong Thuy, Duong, Hong Diep Thi, Hoang, Anh Vu, Nguyen, Hoang Bac, Dinh, Kiet Truong, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Do, Thanh-Thuy Thi, Giang, Hoa, Tran, Le Son and Tran, Diep Tuan (2021). Ultra-deep sequencing of plasma-circulating DNA for the detection of tumor- derived mutations in patients with nonmetastatic colorectal cancer. Cancer Investigation, 40 (4), 1-12. doi: 10.1080/07357907.2021.2017951 |
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2021 Journal Article Liquid biopsy uncovers distinct patterns of DNA methylation and copy number changes in NSCLC patients with different EGFR-TKI resistant mutationsNguyen, Hoai-Nghia, Cao, Ngoc-Phuong Thi, Van Nguyen, Thien-Chi, Le, Khang Nguyen Duy, Nguyen, Dat Thanh, Nguyen, Quynh-Tho Thi, Nguyen, Thai-Hoa Thi, Van Nguyen, Chu, Le, Ha Thu, Nguyen, Mai-Lan Thi, Nguyen, Trieu Vu, Tran, Vu Uyen, Luong, Bac An, Le, Linh Gia Hoang, Ho, Quoc Chuong, Pham, Hong-Anh Thi, Vo, Binh Thanh, Nguyen, Luan Thanh, Dang, Anh-Thu Huynh, Nguyen, Sinh Duy, Do, Duc Minh, Do, Thanh-Thuy Thi, Hoang, Anh Vu, Dinh, Kiet Truong, Phan, Minh-Duy, Giang, Hoa and Tran, Le Son (2021). Liquid biopsy uncovers distinct patterns of DNA methylation and copy number changes in NSCLC patients with different EGFR-TKI resistant mutations. Scientific Reports, 11 (1) 16436, 1-12. doi: 10.1038/s41598-021-95985-6 |
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2021 Journal Article Genetic landscape of recessive diseases in the Vietnamese population from large‐scale clinical exome sequencingTran, Ngoc Hieu, Nguyen Thi, Thanh‐Huong, Tang, Hung‐Sang, Hoang, Le‐Phuc, Le Nguyen, Trung‐Hieu, Tran, Nhat‐Thang, Trinh, Thu‐Huong Nhat, Nguyen, Van Thong, Nguyen, Bao‐Han Huu, Nguyen, Hieu Trong, Doan, Loc Phuoc, Phan, Ngoc‐Minh, Thi Nguyen, Kim‐Huong, Nguyen, Hong‐Dang Luu, Thi Quach, Minh‐Tam, Thi Nguyen, Thanh‐Phuong, Tran, Vu Uyen, Tran, Dinh‐Vinh, Thi Nguyen, Quynh‐Tho, Thi Do, Thanh‐Thuy, Lam, Nien Vinh, Thi Ngoc, Phuong Cao, Truong, Dinh Kiet, Nguyen, Hoai‐Nghia, Phan, Minh‐Duy and Giang, Hoa (2021). Genetic landscape of recessive diseases in the Vietnamese population from large‐scale clinical exome sequencing. Human Mutation, 42 (10) humu.24253, 1-10. doi: 10.1002/humu.24253 |
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2021 Journal Article MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome constructionMurigneux, Valentine, Roberts, Leah W., Forde, Brian M., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Irwin, Adam D., Harris, Patrick N. A., Paterson, David L., Schembri, Mark A., Whiley, David M. and Beatson, Scott A. (2021). MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. BMC Genomics, 22 (1) 474, 474. doi: 10.1186/s12864-021-07767-z |
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2021 Journal Article Genetic analysis of Vietnamese patients with early-onset Alzheimer's diseaseTong, Trang Mai, Dao, Thuy Thi Hong, Doan, Loc Phuoc, Nguyen, Dat Thanh, Nguyen, Quynh-Tho Thi, Do, Thanh-Thuy Thi, Truong, Kiet Dinh, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Tran, Thang Cong and Giang, Hoa (2021). Genetic analysis of Vietnamese patients with early-onset Alzheimer's disease. International Journal of Neuroscience, 132 (12), 1-8. doi: 10.1080/00207454.2020.1870974 |
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2020 Journal Article Actionable Mutation Profiles of Non-Small Cell Lung Cancer patients from Vietnamese populationDang, Anh-Thu Huynh, Tran, Vu-Uyen, Tran, Thanh-Truong, Thi Pham, Hong-Anh, Le, Dinh-Thong, Nguyen, Lam, Nguyen, Ngoc-Vu, Thi Nguyen, Thai-Hoa, Nguyen, Chu Van, Le, Ha Thu, Thi Nguyen, Mai-Lan, Le, Vu Thuong, Nguyen, Phuc Huu, Vo, Binh Thanh, Thi Dao, Hong-Thuy, Nguyen, Luan Thanh, Van Nguyen, Thien-Chi, Bui, Quynh-Tram Nguyen, Nguyen, Long Hung, Nguyen, Nguyen Huu, Thi Nguyen, Quynh-Tho, Le, Truong Xuan, Do, Thanh-Thuy Thi, Dinh, Kiet Truong, Do, Han Ngoc, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Tran, Le Son and Giang, Hoa (2020). Actionable Mutation Profiles of Non-Small Cell Lung Cancer patients from Vietnamese population. Scientific Reports, 10 (1) 2707, 2707. doi: 10.1038/s41598-020-59744-3 |
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2020 Journal Article Genetic profiling of Vietnamese population from large-scale genomic analysis of non-invasive prenatal testing dataTran, Ngoc Hieu, Vo, Thanh Binh, Nguyen, Van Thong, Tran, Nhat-Thang, Trinh, Thu-Huong Nhat, Pham, Hong-Anh Thi, Dao, Thi Hong Thuy, Nguyen, Ngoc Mai, Van, Yen-Linh Thi, Tran, Vu Uyen, Vu, Hoang Giang, Bui, Quynh-Tram Nguyen, Vo, Phuong-Anh Ngoc, Nguyen, Huu Nguyen, Nguyen, Quynh-Tho Thi, Do, Thanh-Thuy Thi, Lam, Nien Vinh, Ngoc, Phuong Cao Thi, Truong, Dinh Kiet, Nguyen, Hoai-Nghia, Giang, Hoa and Phan, Minh-Duy (2020). Genetic profiling of Vietnamese population from large-scale genomic analysis of non-invasive prenatal testing data. Scientific Reports, 10 (1) 19142, 1-8. doi: 10.1038/s41598-020-76245-5 |
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2020 Journal Article Repurposing a neurodegenerative disease drug to treat Gram-negative antibiotic-resistant bacterial sepsisDe Oliveira, David M. P., Bohlmann, Lisa, Conroy, Trent, Jen, Freda E.-C., Everest-Dass, Arun, Hansford, Karl A., Bolisetti, Raghu, El-Deeb, Ibrahim M., Forde, Brian M., Phan, Minh-Duy, Lacey, Jake A., Tan, Aimee, Rivera-Hernandez, Tania, Brouwer, Stephan, Keller, Nadia, Kidd, Timothy J., Cork, Amanda J., Bauer, Michelle J., Cook, Gregory M., Davies, Mark R., Beatson, Scott A., Paterson, David L., McEwan, Alastair G., Li, Jian, Schembri, Mark A., Blaskovich, Mark A. T., Jennings, Michael P., McDevitt, Christopher A., von Itzstein, Mark and Walker, Mark J. (2020). Repurposing a neurodegenerative disease drug to treat Gram-negative antibiotic-resistant bacterial sepsis. Science Translational Medicine, 12 (570) abb3791, eabb3791. doi: 10.1126/scitranslmed.abb3791 |
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2020 Journal Article Ultra-Deep Massive Parallel Sequencing of Plasma Cell-Free DNA Enables Large-Scale Profiling of Driver Mutations in Vietnamese Patients With Advanced Non-Small Cell Lung CancerTran, Le Son, Nguyen, Quynh-Tho Thi, Nguyen, Chu Van, Tran, Vu-Uyen, Nguyen, Thai-Hoa Thi, Le, Ha Thu, Nguyen, Mai-Lan Thi, Le, Vu Thuong, Pham, Lam-Son, Vo, Binh Thanh, Dang, Anh-Thu Huynh, Nguyen, Luan Thanh, Nguyen, Thien-Chi Van, Pham, Hong-Anh Thi, Tran, Thanh-Truong, Nguyen, Long Hung, Nguyen, Thanh-Thanh Thi, Nguyen, Kim-Huong Thi, Vu, Yen-Vi, Nguyen, Nguyen Huu, Bui, Vinh-Quang, Bui, Hai-Ha, Do, Thanh-Thuy Thi, Lam, Nien Vinh, Truong Dinh, Kiet, Phan, Minh-Duy, Nguyen, Hoai-Nghia and Giang, Hoa (2020). Ultra-Deep Massive Parallel Sequencing of Plasma Cell-Free DNA Enables Large-Scale Profiling of Driver Mutations in Vietnamese Patients With Advanced Non-Small Cell Lung Cancer. Frontiers in Oncology, 10 1351. doi: 10.3389/fonc.2020.01351 |
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2020 Journal Article Frontline Science: LPS‐inducible SLC30A1 drives human macrophage‐mediated zinc toxicity against intracellular Escherichia coliStocks, Claudia J., Pein, Jessica B., Curson, James E.B., Rae, James, Phan, Minh‐Duy, Foo, Darren, Bokil, Nilesh J., Kambe, Taiho, Peters, Kate M., Parton, Robert G., Schembri, Mark A., Kapetanovic, Ronan and Sweet, Matthew J. (2020). Frontline Science: LPS‐inducible SLC30A1 drives human macrophage‐mediated zinc toxicity against intracellular Escherichia coli. Journal of Leukocyte Biology, 109 (2) JLB.2HI0420-160R, 287-297. doi: 10.1002/jlb.2hi0420-160r |
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2020 Journal Article TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistanceYasir, Muhammad, Turner, A Keith, Bastkowski, Sarah, Baker, David, Page, Andrew J., Telatin, Andrea, Phan, Minh-Duy, Monahan, Leigh, Savva, George M., Darling, Aaron, Webber, Mark A. and Charles, Ian G. (2020). TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance. Genome Research, 30 (2), 239-249. doi: 10.1101/gr.254391.119 |
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2020 Journal Article Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaecheiRoberts, Leah W., Harris, Patrick N. A., Forde, Brian M., Ben Zakour, Nouri L., Catchpoole, Elizabeth, Stanton-Cook, Mitchell, Phan, Minh-Duy, Sidjabat, Hanna E., Bergh, Haakon, Heney, Claire, Gawthorne, Jayde A., Lipman, Jeffrey, Allworth, Anthony, Chan, Kok-Gan, Chong, Teik Min, Yin, Wai-Fong, Schembri, Mark A., Paterson, David L. and Beatson, Scott A. (2020). Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei. Nature Communications, 11 (1) 466, 466. doi: 10.1038/s41467-019-14139-5 |
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2020 Journal Article Evaluation of a liquid biopsy protocol using ultra-deep massive parallel sequencing for detecting and quantifying circulation tumor DNA in colorectal cancer patientsNguyen, Huu Thinh, Tran, Duc Huy, Ngo, Quoc Dat, Pham, Hong-Anh Thi, Tran, Thanh-Truong, Tran, Vu-Uyen, Pham, Truong-Vinh Ngoc, Le, Trung Kien, Le, Ngoc-An Trinh, Nguyen, Ngoc Mai, Vo, Binh Thanh, Nguyen, Luan Thanh, Nguyen, Thien-Chi Van, Bui, Quynh Tram Nguyen, Nguyen, Huu-Nguyen, Le, Linh Gia Hoang, Do, Duc Minh, Do, Thanh-Thuy Thi, Truong Dinh, Kiet, Phan, Minh-Duy, Tran, Le Son, Giang, Hoa and Nguyen, Hoai-Nghia (2020). Evaluation of a liquid biopsy protocol using ultra-deep massive parallel sequencing for detecting and quantifying circulation tumor DNA in colorectal cancer patients. Cancer Investigation, 38 (2), 1-9. doi: 10.1080/07357907.2020.1713350 |
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2019 Journal Article Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patientsTran, Le Son, Pham, Hong-Anh Thi, Tran, Vu-Uyen, Tran, Thanh-Truong, Dang, Anh-Thu Huynh, Le, Dinh-Thong, Nguyen, Son-Lam, Nguyen, Ngoc-Vu, Nguyen, Trieu-Vu, Vo, Binh Thanh, Dao, Hong-Thuy Thi, Nguyen, Nguyen Huu, Tran, Tam Huu, Nguyen, Chu Van, Pham, Phuong Cam, Dang-Mai, Anh Tuan, Dinh-Nguyen, Thien Kim, Phan, Van Hieu, Do, Thanh-Thuy Thi, Truong Dinh, Kiet, Do, Han Ngoc, Phan, Minh-Duy, Giang, Hoa and Nguyen, Hoai-Nghia (2019). Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients. PLoS One, 14 (12) e0226193., e0226193. doi: 10.1371/journal.pone.0226193 |
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2019 Journal Article Complex multilevel control of hemolysin production by uropathogenic Escherichia coliNhu, Nguyen Thi Khanh, Phan, Minh-Duy, Forde, Brian M., Murthy, Ambika M. V., Peters, Kate M., Day, Christopher J., Poole, Jessica, Kidd, Timothy J., Welch, Rodney A., Jennings, Michael P., Ulett, Glen C., Sweet, Matthew J., Beatson, Scott A. and Schembri, Mark A. (2019). Complex multilevel control of hemolysin production by uropathogenic Escherichia coli. mBio, 10 (5) e02248-19. doi: 10.1128/mbio.02248-19 |
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2019 Journal Article Bioinformatic and molecular analysis of inverse autotransporters from Escherichia coliGoh, Kelvin G. K., Moriel, Danilo G., Hancock, Steven J., Phan, Minh-Duy and Schembri, Mark A. (2019). Bioinformatic and molecular analysis of inverse autotransporters from Escherichia coli. MSphere, 4 (4) e00572-19. doi: 10.1128/msphere.00572-19 |
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2019 Journal Article Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infectionForde, Brian M., Roberts, Leah W., Phan, Minh-Duy, Peters, Kate M., Fleming, Brittany A., Russell, Colin W., Lenherr, Sara M., Myers, Jeremy B., Barker, Adam P., Fisher, Mark A., Chong, Teik-Min, Yin, Wai-Fong, Chan, Kok-Gan, Schembri, Mark A., Mulvey, Matthew A. and Beatson, Scott A. (2019). Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection. Nature Communications, 10 (1) 3643, 3643. doi: 10.1038/s41467-019-11571-5 |
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2019 Journal Article Mycobacterium tuberculosis requires glyoxylate shunt and reverse methylcitrate cycle for lactate and pyruvate metabolismSerafini, Agnese, Tan, Lendl, Horswell, Stuart, Howell, Steven, Greenwood, Daniel J., Hunt, Deborah M., Phan, Minh-Duy, Schembri, Mark, Monteleone, Mercedes, Montague, Christine R., Britton, Warwick, Garza-Garcia, Acely, Snijders, Ambrosius P., VanderVen, Brian, Gutierrez, Maximiliano G., West, Nicholas P. and de Carvalho, Luiz Pedro S. (2019). Mycobacterium tuberculosis requires glyoxylate shunt and reverse methylcitrate cycle for lactate and pyruvate metabolism. Molecular Microbiology, 112 (4) mmi.14362, 1284-1307. doi: 10.1111/mmi.14362 |
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2019 Journal Article Unique structural features of a bacterial autotransporter adhesin suggest mechanisms for interaction with host macromoleculesPaxman, Jason J., Lo, Alvin W., Sullivan, Matthew J., Panjikar, Santosh, Kuiper, Michael, Whitten, Andrew E., Wang, Geqing, Luan, Chi-Hao, Moriel, Danilo G., Tan, Lendl, Peters, Kate M., Phan, Minh-Duy, Gee, Christine L., Ulett, Glen C., Schembri, Mark A. and Heras, Begoña (2019). Unique structural features of a bacterial autotransporter adhesin suggest mechanisms for interaction with host macromolecules. Nature Communications, 10 (1) 1967, 1967. doi: 10.1038/s41467-019-09814-6 |
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2019 Journal Article Uropathogenic Escherichia coli employs both evasion and resistance to subvert innate immune-mediated zinc toxicity for disseminationStocks, Claudia J., Phan, Minh-Duy, Achard, Maud E. S., Nhu, Nguyen Thi Khanh, Condon, Nicholas D., Gawthorne, Jayde A., Lo, Alvin W., Peters, Kate M., McEwan, Alastair G., Kapetanovic, Ronan, Schembri, Mark A. and Sweet, Matthew J. (2019). Uropathogenic Escherichia coli employs both evasion and resistance to subvert innate immune-mediated zinc toxicity for dissemination. Proceedings of the National Academy of Sciences, 116 (13), 6341-6350. doi: 10.1073/pnas.1820870116 |
