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2022 Journal Article Multimodal analysis of ctDNA methylation and fragmentomic profiles enhances detection of nonmetastatic colorectal cancerNguyen, Huu Thinh, Khoa Huynh, Le Anh, Nguyen, Trieu Vu, Tran, Duc Huy, Thu Tran, Thuy Thi, Khang Le, Nguyen Duy, Le, Ngoc-An Trinh, Pham, Truong-Vinh Ngoc, Le, Minh-Triet, Quynh Pham, Thi Mong, Nguyen, Trong Hieu, Van Nguyen, Thien Chi, Nguyen, Thanh Dat, Tran Nguyen, Bui Que, Phan, Minh-Duy, Giang, Hoa and Tran, Le Son (2022). Multimodal analysis of ctDNA methylation and fragmentomic profiles enhances detection of nonmetastatic colorectal cancer. Future Oncology, 18 (35), 3895-3912. doi: 10.2217/fon-2022-1041 |
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2022 Journal Article Detection of maternal carriers of common α-thalassemia deletions from cell-free DNADoan, Phuoc-Loc, Nguyen, Duy-Anh, Le, Quang Thanh, Hoang, Diem-Tuyet Thi, Nguyen, Huu Du, Nguyen, Canh Chuong, Doan, Kim Phuong Thi, Tran, Nhat Thang, Ha, Thi Minh Thi, Trinh, Thu Huong Nhat, Nguyen, Van Thong, Bui, Chi Thuong, Lai, Ngoc-Diep Thi, Duong, Thanh Hien, Mai, Hai-Ly, Huynh, Pham-Uyen Vinh, Huynh, Thu Thanh Thi, Le, Quang Vinh, Vo, Thanh Binh, Dao, Thi Hong-Thuy, Vo, Phuong Anh, Le, Duy-Khang Nguyen, Tran, Ngoc Nhu Thi, Tran, Quynh Nhu Thi, Van, Yen-Linh Thi, Tran, Huyen-Trang Thi, Nguyen, Hoai Thi, Nguyen, Phuong-Uyen, Do, Thanh-Thuy Thi ... Phan, Minh-Duy (2022). Detection of maternal carriers of common α-thalassemia deletions from cell-free DNA. Scientific Reports, 12 (1) 13581, 1-9. doi: 10.1038/s41598-022-17718-7 |
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2022 Journal Article Tần suất và phổ đột biến gen của Hội chứng ung thư vú và buồng trứng di truyền trên quần thể người Việt NamNguyễn, Lưu Hồng Đăng, Tăng, Hùng Sang, Phan, Ngọc Minh, Nguyễn, Thị Thanh, Nguyễn, Dư Quyền, Tiêu, Bá Linh, Nguyễn, Thị Huệ Hạnh, Nguyễn, Yến Nhi, Trần, Vũ Uyên, Lê, Minh Phong, Nguyễn, Duy Sinh, Phan, Minh Duy, Từ, Ngọc Ly Lan, Giang, Hoa, Nguyễn, Hoài Nghĩa, Trương, Đình Kiệt and Đỗ, Thị Thanh Thủy (2022). Tần suất và phổ đột biến gen của Hội chứng ung thư vú và buồng trứng di truyền trên quần thể người Việt Nam. Tạp chí Phụ sản, 20 (3), 130-135. doi: 10.46755/vjog.2022.3.1433 |
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2022 Journal Article Fitness effects of blaCTX-M-15-harbouring F2:A1:B− plasmids on their native Escherichia coli ST131 H30Rx hostsPalkovicova, Jana, Sukkar, Iva, Delafuente, Javier, Valcek, Adam, Medvecky, Matej, Jamborova, Ivana, Bitar, Ibrahim, Phan, Minh Duy, San Millan, Alvaro and Dolejska, Monika (2022). Fitness effects of blaCTX-M-15-harbouring F2:A1:B− plasmids on their native Escherichia coli ST131 H30Rx hosts. Journal of Antimicrobial Chemotherapy, 77 (11), 2960-2963. doi: 10.1093/jac/dkac250 |
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2022 Journal Article Ucl fimbriae regulation and glycan receptor specificity contribute to gut colonisation by extra-intestinal pathogenic Escherichia coliHancock, Steven J., Lo, Alvin W., Ve, Thomas, Day, Christopher J., Tan, Lendl, Mendez, Alejandra A., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Peters, Kate M., Richards, Amanda C., Fleming, Brittany A., Chang, Chyden, Ngu, Dalton H. Y., Forde, Brian M., Haselhorst, Thomas, Goh, Kelvin G. K., Beatson, Scott A., Jennings, Michael P., Mulvey, Matthew A., Kobe, Bostjan and Schembri, Mark A. (2022). Ucl fimbriae regulation and glycan receptor specificity contribute to gut colonisation by extra-intestinal pathogenic Escherichia coli. PLoS Pathogens , 18 (6) e1010582, e1010582. doi: 10.1371/journal.ppat.1010582 |
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2022 Journal Article Gut–bladder axis in recurrent UTISchembri, Mark A., Nhu, Nguyen Thi Khanh and Phan, Minh-Duy (2022). Gut–bladder axis in recurrent UTI. Nature Microbiology, 7 (5), 601-602. doi: 10.1038/s41564-022-01113-z |
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2022 Journal Article Differential Afa/Dr fimbriae expression in the multidrug-resistant Escherichia coli ST131 cloneAlvarez-Fraga, Laura, Phan, Minh-Duy, Goh, Kelvin G. K., Nhu, Nguyen Thi Khanh, Hancock, Steven J., Allsopp, Luke P., Peters, Kate M., Forde, Brian M., Roberts, Leah W., Sullivan, Matthew J., Totsika, Makrina, Beatson, Scott A., Ulett, Glen C. and Schembri, Mark A. (2022). Differential Afa/Dr fimbriae expression in the multidrug-resistant Escherichia coli ST131 clone. mBio, 13 (1) e03519, e0351921. doi: 10.1128/mbio.03519-21 |
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2022 Journal Article Rescuing Tetracycline Class Antibiotics for the Treatment of Multidrug-Resistant Acinetobacter baumannii Pulmonary InfectionDe Oliveira, David M. P., Forde, Brian M., Phan, Minh-Duy, Steiner, Bernhard, Zhang, Bing, Zuegg, Johannes, El-deeb, Ibrahim M., Li, Gen, Keller, Nadia, Brouwer, Stephan, Harbison-Price, Nichaela, Cork, Amanda J., Bauer, Michelle J., Alquethamy, Saleh F., Beatson, Scott A., Roberts, Jason A., Paterson, David L., McEwan, Alastair G., Blaskovich, Mark A. T., Schembri, Mark A., McDevitt, Christopher A., von Itzstein, Mark and Walker, Mark J. (2022). Rescuing Tetracycline Class Antibiotics for the Treatment of Multidrug-Resistant Acinetobacter baumannii Pulmonary Infection. mBio, 13 (1) e03517, e0351721. doi: 10.1128/mbio.03517-21 |
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2022 Journal Article Pathogenic Variant Profile of Hereditary Cancer Syndromes in a Vietnamese CohortTran, Van Thuan, Nguyen, Sao Trung, Pham, Xuan Dung, Phan, Thanh Hai, Nguyen, Van Chu, Nguyen, Huu Thinh, Nguyen, Huu Phuc, Doan, Phuong Thao Thi, Le, Tuan Anh, Nguyen, Bao Toan, Jasmine, Thanh Xuan, Nguyen, Duy Sinh, Nguyen, Hong-Dang Luu, Nguyen, Ngoc Mai, Do, Duy Xuan, Tran, Vu Uyen, Nguyen, Hue Hanh Thi, Le, Minh Phong, Nguyen, Yen Nhi, Do, Thanh Thuy Thi, Truong, Dinh Kiet, Tang, Hung Sang, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Giang, Hoa and Tu, Lan N. (2022). Pathogenic Variant Profile of Hereditary Cancer Syndromes in a Vietnamese Cohort. Frontiers in Oncology, 11 789659. doi: 10.3389/fonc.2021.789659 |
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2022 Journal Article Combined Gap-Polymerase Chain Reaction and Targeted Next-Generation Sequencing Improve α- and β-Thalassemia Carrier Screening in Pregnant Women in VietnamLam, Tuan-Thanh, Nguyen, Doan-Tu, Le, Quang Thanh, Nguyen, Duy-Anh, Hoang, Diem-Tuyet Thi, Nguyen, Huu Du, Nguyen, Canh Chuong, Doan, Kim Phuong Thi, Tran, Nhat-Thang, Ha, Thi Minh Thi, Trinh, Thu Huong Nhat, Nguyen, Van Thong, Lam, Duc Tam, Le, Minh Tam, Nguyen, Xuan Thao, Ho, Thu-Hang Thi, Tran, Trung Hoanh, Ho, Viet Thang, Bui, Thanh Van, Nguyen, Van Trong, Hoang, Phuoc Ba, Nguyen, Hoai Thanh, Nguyen, Manh Hoan, Vo, Thanh-Binh, Le, Duy-Khang Nguyen, Truong, Thao Ngoc, Dao, Hong-Thuy Thi, Vo, Phuong-Anh Ngoc, Nguyen, Thien-Chi Van ... Nguyen, Hoai-Nghia (2022). Combined Gap-Polymerase Chain Reaction and Targeted Next-Generation Sequencing Improve α- and β-Thalassemia Carrier Screening in Pregnant Women in Vietnam. Hemoglobin, 46 (4), 233-239. doi: 10.1080/03630269.2022.2096461 |
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2022 Journal Article Massively parallel sequencing uncovered disease-associated variant spectra of glucose-6-phosphate dehydrogenase deficiency, phenylketonuria and galactosemia in Vietnamese pregnant womenNguyen, Tat-Thanh, Le, Quang-Thanh, Hoang, Diem-Tuyet Thi, Du Nguyen, Huu, Ha, Thi Minh Thi, Nguyen, My-Nhi Ba, Ta, Thanh-Thuy Thi, Tran, Nhat Thang, Trinh, Thu Huong Nhat, Doan, Kim Phuong Thi, Lam, Duc Tam, Tran, Son Tra Thi, Nguyen, Thanh Xuan, Le, Hong-Thinh, Ha, Van Tuan, Nguyen, Manh Hoan, Le, Ba-Liem Kim, Duong, My Linh, Pham, Trung Ha, Tran, Anh Tuan, Phan, Xuan Lan Thi, Huynh, Thanh Liem, Nguyen, Lan-Phuong Thi, Vo, Thanh Binh, Le, Duy-Khang Nguyen, Tran, Ngoc Nhu Thi, Tran, Quynh Nhu Thi, Van, Yen-Linh Thi, Huynh, Bich-Ngoc Thi ... Giang, Hoa (2022). Massively parallel sequencing uncovered disease-associated variant spectra of glucose-6-phosphate dehydrogenase deficiency, phenylketonuria and galactosemia in Vietnamese pregnant women. Molecular Genetics and Genomic Medicine, 10 (7) e1959. doi: 10.1002/mgg3.1959 |
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2021 Journal Article Modified horseshoe crab peptides target and kill bacteria inside host cellsAmiss, Anna S., von Pein, Jessica B., Webb, Jessica R., Condon, Nicholas D., Harvey, Peta J., Phan, Minh-Duy, Schembri, Mark A., Currie, Bart J., Sweet, Matthew J., Craik, David J., Kapetanovic, Ronan, Henriques, Sónia Troeira and Lawrence, Nicole (2021). Modified horseshoe crab peptides target and kill bacteria inside host cells. Cellular and Molecular Life Sciences, 79 (1) 38, 38. doi: 10.1007/s00018-021-04041-z |
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2021 Journal Article Ultra-deep sequencing of plasma-circulating DNA for the detection of tumor- derived mutations in patients with nonmetastatic colorectal cancerNguyen, Huu-Thinh, Luong, Bac An, Tran, Duc-Huy, Nguyen, Trong-Hieu, Ngo, Quoc Dat, Le, Linh Gia Hoang, Ho, Quoc Chuong, Nguyen, Hue-Hanh Thi, Nguyen, Cao Minh, Tran, Vu Uyen, Pham, Truong Vinh Ngoc, Le, Minh Triet, Le, Ngoc An Trinh, Le, Trung Kien, Nguyen, Thanh Luan, Pham, Hong-Anh Thi, Le, Hong Thuy, Duong, Hong Diep Thi, Hoang, Anh Vu, Nguyen, Hoang Bac, Dinh, Kiet Truong, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Do, Thanh-Thuy Thi, Giang, Hoa, Tran, Le Son and Tran, Diep Tuan (2021). Ultra-deep sequencing of plasma-circulating DNA for the detection of tumor- derived mutations in patients with nonmetastatic colorectal cancer. Cancer Investigation, 40 (4), 1-12. doi: 10.1080/07357907.2021.2017951 |
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2021 Journal Article Liquid biopsy uncovers distinct patterns of DNA methylation and copy number changes in NSCLC patients with different EGFR-TKI resistant mutationsNguyen, Hoai-Nghia, Cao, Ngoc-Phuong Thi, Van Nguyen, Thien-Chi, Le, Khang Nguyen Duy, Nguyen, Dat Thanh, Nguyen, Quynh-Tho Thi, Nguyen, Thai-Hoa Thi, Van Nguyen, Chu, Le, Ha Thu, Nguyen, Mai-Lan Thi, Nguyen, Trieu Vu, Tran, Vu Uyen, Luong, Bac An, Le, Linh Gia Hoang, Ho, Quoc Chuong, Pham, Hong-Anh Thi, Vo, Binh Thanh, Nguyen, Luan Thanh, Dang, Anh-Thu Huynh, Nguyen, Sinh Duy, Do, Duc Minh, Do, Thanh-Thuy Thi, Hoang, Anh Vu, Dinh, Kiet Truong, Phan, Minh-Duy, Giang, Hoa and Tran, Le Son (2021). Liquid biopsy uncovers distinct patterns of DNA methylation and copy number changes in NSCLC patients with different EGFR-TKI resistant mutations. Scientific Reports, 11 (1) 16436, 1-12. doi: 10.1038/s41598-021-95985-6 |
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2021 Journal Article Genetic landscape of recessive diseases in the Vietnamese population from large‐scale clinical exome sequencingTran, Ngoc Hieu, Nguyen Thi, Thanh‐Huong, Tang, Hung‐Sang, Hoang, Le‐Phuc, Le Nguyen, Trung‐Hieu, Tran, Nhat‐Thang, Trinh, Thu‐Huong Nhat, Nguyen, Van Thong, Nguyen, Bao‐Han Huu, Nguyen, Hieu Trong, Doan, Loc Phuoc, Phan, Ngoc‐Minh, Thi Nguyen, Kim‐Huong, Nguyen, Hong‐Dang Luu, Thi Quach, Minh‐Tam, Thi Nguyen, Thanh‐Phuong, Tran, Vu Uyen, Tran, Dinh‐Vinh, Thi Nguyen, Quynh‐Tho, Thi Do, Thanh‐Thuy, Lam, Nien Vinh, Thi Ngoc, Phuong Cao, Truong, Dinh Kiet, Nguyen, Hoai‐Nghia, Phan, Minh‐Duy and Giang, Hoa (2021). Genetic landscape of recessive diseases in the Vietnamese population from large‐scale clinical exome sequencing. Human Mutation, 42 (10) humu.24253, 1-10. doi: 10.1002/humu.24253 |
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2021 Journal Article MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome constructionMurigneux, Valentine, Roberts, Leah W., Forde, Brian M., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Irwin, Adam D., Harris, Patrick N. A., Paterson, David L., Schembri, Mark A., Whiley, David M. and Beatson, Scott A. (2021). MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. BMC Genomics, 22 (1) 474, 474. doi: 10.1186/s12864-021-07767-z |
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2021 Journal Article Genetic analysis of Vietnamese patients with early-onset Alzheimer's diseaseTong, Trang Mai, Dao, Thuy Thi Hong, Doan, Loc Phuoc, Nguyen, Dat Thanh, Nguyen, Quynh-Tho Thi, Do, Thanh-Thuy Thi, Truong, Kiet Dinh, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Tran, Thang Cong and Giang, Hoa (2021). Genetic analysis of Vietnamese patients with early-onset Alzheimer's disease. International Journal of Neuroscience, 132 (12), 1-8. doi: 10.1080/00207454.2020.1870974 |
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2020 Journal Article Genetic profiling of Vietnamese population from large-scale genomic analysis of non-invasive prenatal testing dataTran, Ngoc Hieu, Vo, Thanh Binh, Nguyen, Van Thong, Tran, Nhat-Thang, Trinh, Thu-Huong Nhat, Pham, Hong-Anh Thi, Dao, Thi Hong Thuy, Nguyen, Ngoc Mai, Van, Yen-Linh Thi, Tran, Vu Uyen, Vu, Hoang Giang, Bui, Quynh-Tram Nguyen, Vo, Phuong-Anh Ngoc, Nguyen, Huu Nguyen, Nguyen, Quynh-Tho Thi, Do, Thanh-Thuy Thi, Lam, Nien Vinh, Ngoc, Phuong Cao Thi, Truong, Dinh Kiet, Nguyen, Hoai-Nghia, Giang, Hoa and Phan, Minh-Duy (2020). Genetic profiling of Vietnamese population from large-scale genomic analysis of non-invasive prenatal testing data. Scientific Reports, 10 (1) 19142, 1-8. doi: 10.1038/s41598-020-76245-5 |
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2020 Journal Article Actionable Mutation Profiles of Non-Small Cell Lung Cancer patients from Vietnamese populationDang, Anh-Thu Huynh, Tran, Vu-Uyen, Tran, Thanh-Truong, Thi Pham, Hong-Anh, Le, Dinh-Thong, Nguyen, Lam, Nguyen, Ngoc-Vu, Thi Nguyen, Thai-Hoa, Nguyen, Chu Van, Le, Ha Thu, Thi Nguyen, Mai-Lan, Le, Vu Thuong, Nguyen, Phuc Huu, Vo, Binh Thanh, Thi Dao, Hong-Thuy, Nguyen, Luan Thanh, Van Nguyen, Thien-Chi, Bui, Quynh-Tram Nguyen, Nguyen, Long Hung, Nguyen, Nguyen Huu, Thi Nguyen, Quynh-Tho, Le, Truong Xuan, Do, Thanh-Thuy Thi, Dinh, Kiet Truong, Do, Han Ngoc, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Tran, Le Son and Giang, Hoa (2020). Actionable Mutation Profiles of Non-Small Cell Lung Cancer patients from Vietnamese population. Scientific Reports, 10 (1) 2707, 2707. doi: 10.1038/s41598-020-59744-3 |
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2020 Journal Article Repurposing a neurodegenerative disease drug to treat Gram-negative antibiotic-resistant bacterial sepsisDe Oliveira, David M. P., Bohlmann, Lisa, Conroy, Trent, Jen, Freda E.-C., Everest-Dass, Arun, Hansford, Karl A., Bolisetti, Raghu, El-Deeb, Ibrahim M., Forde, Brian M., Phan, Minh-Duy, Lacey, Jake A., Tan, Aimee, Rivera-Hernandez, Tania, Brouwer, Stephan, Keller, Nadia, Kidd, Timothy J., Cork, Amanda J., Bauer, Michelle J., Cook, Gregory M., Davies, Mark R., Beatson, Scott A., Paterson, David L., McEwan, Alastair G., Li, Jian, Schembri, Mark A., Blaskovich, Mark A. T., Jennings, Michael P., McDevitt, Christopher A., von Itzstein, Mark and Walker, Mark J. (2020). Repurposing a neurodegenerative disease drug to treat Gram-negative antibiotic-resistant bacterial sepsis. Science Translational Medicine, 12 (570) abb3791, eabb3791. doi: 10.1126/scitranslmed.abb3791 |
