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2022 Journal Article Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131Phan, Minh-Duy, Peters, Kate M., Alvarez Fraga, Laura, Wallis, Steven C., Hancock, Steven, Nhu, Nguyen Thi Khanh, Forde, Brian, Bauer, Michelle J., Paterson, David L., Beatson, Scott A, Lipman, Jeffrey and Schembri, Mark A. (2022). Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131. Antimicrobial Agents and Chemotherapy, 66 (1) e02146-21, 1-11. doi: 10.1128/aac.02146-21 |
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2021 Journal Article Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer componentHancock, Steven J., Phan, Minh‐Duy, Roberts, Leah, Vu, Thu Ngoc Minh, Harris, Patrick N.A., Beatson, Scott A. and Schembri, Mark A. (2021). Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer component. Molecular Microbiology, 116 (1), 154-167. doi: 10.1111/mmi.14697 |
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2020 Journal Article Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaBHancock, Steven J., Phan, Minh-Duy, Luo, Zhenyao, Lo, Alvin W., Peters, Kate M., Nhu, Nguyen Thi Khanh, Forde, Brian M., Whitfield, Jason, Yang, Ji, Strugnell, Richard A., Paterson, David L., Walsh, Timothy R., Kobe, Bostjan, Beatson, Scott A. and Schembri, Mark A. (2020). Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB. Nature Microbiology, 5 (11), 1340-1348. doi: 10.1038/s41564-020-0775-0 |
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2020 Journal Article Uncovering novel susceptibility targets to enhance the efficacy of third-generation cephalosporins against ESBL-producing uropathogenic Escherichia coliPhan, Minh-Duy, Bottomley, Amy L., Peters, Kate M., Harry, Elizabeth J. and Schembri, Mark A. (2020). Uncovering novel susceptibility targets to enhance the efficacy of third-generation cephalosporins against ESBL-producing uropathogenic Escherichia coli. Journal of Antimicrobial Chemotherapy, 75 (6), 1415-1423. doi: 10.1093/jac/dkaa023 |
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2025 Journal Article Combination of Hotspot Mutations With Methylation and Fragmentomic Profiles to Enhance Multi‐Cancer Early DetectionNguyen, Thi Hue Hanh, Vu, Giang Hoang, Nguyen, Tu Thi, Nguyen, Tuan Anh, Tran, Vu Uyen, Vu, Luyen Thi, Nguyen, Giang Thi Huong, Nguyen, Nhat Duy, Tran, Trung Hieu, Nguyen, Van Thien Chi, Nguyen, Thanh Dat, Nguyen, Trong Hieu, Vo, Dac Ho, Van, Thi Tuong Vi, Do, Thanh Thi, Le, Minh Phong, Huynh, Le Anh Khoa, Nguyen, Duy Sinh, Tang, Hung Sang, Nguyen, Hoai‐Nghia, Phan, Minh‐Duy, Giang, Hoa, Tu, Lan N. and Tran, Le Son (2025). Combination of Hotspot Mutations With Methylation and Fragmentomic Profiles to Enhance Multi‐Cancer Early Detection. Cancer Medicine, 14 (1). doi: 10.1002/cam4.70575 |
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2024 Journal Article An ovine septic shock model of live bacterial infusionObonyo, Nchafatso G., Raman, Sainath, Suen, Jacky Y., Peters, Kate M., Phan, Minh-Duy, Passmore, Margaret R., Bouquet, Mahe, Wilson, Emily S., Hyslop, Kieran, Palmieri, Chiara, White, Nicole, Sato, Kei, Farah, Samia M., Gandini, Lucia, Liu, Keibun, Fior, Gabriele, Heinsar, Silver, Ijuin, Shinichi, Kyun Ro, Sun, Abbate, Gabriella, Ainola, Carmen, Sato, Noriko, Lundon, Brooke, Portatadino, Sofia, Rachakonda, Reema H., Schneider, Bailey, Harley, Amanda, See Hoe, Louise E., Schembri, Mark A. ... Fraser, John F. (2024). An ovine septic shock model of live bacterial infusion. Intensive Care Medicine Experimental, 12 (1) 94. doi: 10.1186/s40635-024-00684-x |
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2024 Journal Article The T cell receptor β chain repertoire of tumor infiltrating lymphocytes improves neoantigen prediction and prioritizationPham, Thi Mong Quynh, Nguyen, Thanh Nhan, Tran Nguyen, Bui Que, Diem Tran, Thi Phuong, Diem Pham, Nguyen My, Phuc Nguyen, Hoang Thien, Cuong Ho, Thi Kim, Linh Nguyen, Dinh Viet, Nguyen, Huu Thinh, Tran, Duc Huy, Tran, Thanh Sang, Pham, Truong Vinh Ngoc, Le, Minh Triet, Vy Nguyen, Thi Tuong, Phan, Minh-Duy, Giang, Hoa, Nguyen, Hoai-Nghia and Tran, Le Son (2024). The T cell receptor β chain repertoire of tumor infiltrating lymphocytes improves neoantigen prediction and prioritization. eLife, 13. doi: 10.7554/elife.94658.3 |
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2024 Journal Article Evolution of the pheV-tRNA integrated genomic island in Escherichia coliNhu, Nguyen Thi Khanh, Forde, Brian M., Ben Zakour, Nouri L., Phan, Minh-Duy, Roberts, Leah W., Beatson, Scott A. and Schembri, Mark A. (2024). Evolution of the pheV-tRNA integrated genomic island in Escherichia coli. PLoS Genetics, 20 (10) e1011459, e1011459. doi: 10.1371/journal.pgen.1011459 |
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2024 Journal Article Evaluation of a multimodal ctDNA-based assay for detection of aggressive cancers lacking standard screening testsThien Nguyen, Chi Van, Hanh Nguyen, Thi Hue, Vo, Dac Ho, Vi Van, Thi Tuong, Huong Nguyen, Giang Thi, Tran, Trung Hieu, Nguyen, Trong Hieu, Khoa Huynh, Le Anh, Nguyen, Thanh Dat, Tran, Nhat-Huy, Thi Ha, Thi Minh, Quynh Le, Phan Tuong, Truong, Xuan Long, Nguyen, Hong-Dang Luu, Tran, Uyen Vu, Hoang, Thanh Quang, Nguyen, Viet Binh, Le, Van Cuong, Nguyen, Xuan Chung, Phuong Nguyen, Thi Minh, Nguyen, Van Hung, Nhat Tran, Nu Thien, Quynh Dang, Thi Ngoc, Tran, Manh Hoang, Nguyen, Phuc Nguyen, Dao, Thi Huyen, Phuc Nguyen, Huu Tam, Tran, Nhat-Thang, Phan, Thi Van ... Tran, Le Son (2024). Evaluation of a multimodal ctDNA-based assay for detection of aggressive cancers lacking standard screening tests. Future Oncology, ahead-of-print (ahead-of-print), 1-11. doi: 10.1080/14796694.2024.2413266 |
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2024 Journal Article Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing EnterobacteralesGraf, Fabrice E., Goodman, Richard N., Gallichan, Sarah, Forrest, Sally, Picton-Barlow, Esther, Fraser, Alice J., Phan, Minh-Duy, Mphasa, Madalitso, Hubbard, Alasdair T. M., Musicha, Patrick, Schembri, Mark A., Roberts, Adam P., Edwards, Thomas, Lewis, Joseph M. and Feasey, Nicholas A. (2024). Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales. Nature Communications, 15 (1) 9019, 1-12. doi: 10.1038/s41467-024-53391-2 |
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2024 Journal Article Breast cancer risk assessment based on susceptibility genes and polygenic risk score in Vietnamese womenVinh, Dao Nguyen, Thi Ngoc Nguyen, Thanh, Nguyen Tran, Tuan-Anh, Doan, Phuoc-Loc, Nguyen Hoang, Van-Anh, Phan, Minh-Duy, Giang, Hoa, Nguyen, Hoai-Nghia, Nguyen, Hue Thi and Tu, Lan N. (2024). Breast cancer risk assessment based on susceptibility genes and polygenic risk score in Vietnamese women. BJC Reports, 2 (1) 80. doi: 10.1038/s44276-024-00100-7 |
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2024 Journal Article The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogenWhite, Rhys T., Ashcroft, Melinda M., Bauer, Michelle J., Bell, Jan, Butkiewicz, Dominika, Álvarez-Fraga, Laura, Gibson, Justine S., Kidsley, Amanda K., Mollinger, Joanne L., Peters, Kate M., Phan, Minh-Duy, Roberts, Leah W., Rogers, Benjamin A., Schembri, Mark A., Trott, Darren J., Turnidge, John, Forde, Brian M. and Beatson, Scott A. (2024). The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen. Access Microbiology, 6 (10). doi: 10.1099/acmi.0.000894.v3 |
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2024 Journal Article Modified Tn <i>7</i> transposon vectors for controlled chromosomal gene expressionChang, Chyden, Phan, Minh-Duy and Schembri, Mark A. (2024). Modified Tn 7 transposon vectors for controlled chromosomal gene expression. Applied and Environmental Microbiology, 90 (10) e01556-24, e0155624. doi: 10.1128/aem.01556-24 |
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2024 Journal Article A consultation and work-up diagnosis protocol for a multicancer early detection test: a case series studyDang Nguyen, Luu Hong, Tieu, Ba Linh, Nguyen, Thi Thanh, Ha, Nhung Phuong, Huong Nguyen, Giang Thi, Hanh Nguyen, Thi Hue, Le, Van Hoi, Bui, Vinh Quang, Nguyen, Lan Hieu, Pham, Nhu Hiep, Phan, Thanh Hai, Nguyen, Huu Thinh, Tran, Van Song, Bui, Chi Viet, Vo, Van Kha, Nhan Nguyen, Pham Thanh, Phuoc Dang, Ha Huu, Pham, Van Dung, Cao, Van Thinh, Phan, Ngoc Minh, Nguyen, Van Tung, Quyen Le, Thi Le, Luong, Thi Lan-Anh, Phuong Doan, Thi Kim, Phan, Canh Duy, Nguyen, Thanh Xuan, Pham, Nguyen Tuong, Nguyen, Bao Toan, Thuy Pham, Thi Thu ... Nguyen, Duy Sinh (2024). A consultation and work-up diagnosis protocol for a multicancer early detection test: a case series study. Future Science OA, 10 (1). doi: 10.1080/20565623.2024.2395244 |
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2024 Journal Article Tissue of origin detection for cancer tumor using low-depth cfDNA samples through combination of tumor-specific methylation atlas and genome-wide methylation density in graph convolutional neural networksNguyen, Trong Hieu, Doan, Nhu Nhat Tan, Tran, Trung Hieu, Huynh, Le Anh Khoa, Doan, Phuoc Loc, Nguyen, Thi Hue Hanh, Nguyen, Van Thien Chi, Nguyen, Giang Thi Huong, Nguyen, Hoai-Nghia, Giang, Hoa, Tran, Le Son and Phan, Minh Duy (2024). Tissue of origin detection for cancer tumor using low-depth cfDNA samples through combination of tumor-specific methylation atlas and genome-wide methylation density in graph convolutional neural networks. Journal of Translational Medicine, 22 (1) 618. doi: 10.1186/s12967-024-05416-z |
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2024 Journal Article High-risk Escherichia coli clones that cause neonatal meningitis and association with recrudescent infectionNhu, Nguyen Thi Khanh, Phan, Minh-Duy, Hancock, Steven J., Peters, Kate M., Alvarez-Fraga, Laura, Forde, Brian M., Andersen, Stacey B., Miliya, Thyl, Harris, Patrick N. A., Beatson, Scott A., Schlebusch, Sanmarie, Bergh, Haakon, Turner, Paul, Brauner, Annelie, Westerlund-Wikström, Benita, Irwin, Adam D. and Schembri, Mark A (2024). High-risk Escherichia coli clones that cause neonatal meningitis and association with recrudescent infection. eLife, 12 RP91853. doi: 10.7554/elife.91853.3 |
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2024 Journal Article The genetic landscape of chromosomal aberrations in 3776 Vietnamese fetuses with clinical anomalies during pregnancyTran, Danh-Cuong, Phan, Minh Ngoc, Dao, Hong-Thuy Thi, Nguyen, Hong-Dang Luu, Nguyen, Duy-Anh, Le, Quang Thanh, Hoang, Diem-Tuyet Thi, Tran, Nhat Thang, Thi Ha, Thi Minh, Dinh, Thuy Linh, Nguyen, Canh Chuong, Thi Doan, Kim Phuong, Thi Luong, Lan Anh, Vo, Ta Son, Nhat Trinh, Thu Huong, Nguyen, Van Thong, Vo, Phuong-Anh Ngoc, Nguyen, Yen-Nhi, Dinh, My-An, Doan, Phuoc-Loc, Do, Thanh-Thuy Thi, Nguyen, Quynh-Tho Thi, Truong, Dinh-Kiet, Nguyen, Hoai-Nghia, Phan, Minh-Duy, Tang, Hung-Sang and Giang, Hoa (2024). The genetic landscape of chromosomal aberrations in 3776 Vietnamese fetuses with clinical anomalies during pregnancy. Personalized Medicine, 1-9. doi: 10.2217/pme-2023-0113 |
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2024 Journal Article A convergent evolutionary pathway attenuating cellulose production drives enhanced virulence of some bacteriaNhu, Nguyen Thi Khanh, Rahman, M. Arifur, Goh, Kelvin G. K., Kim, Seung Jae, Phan, Minh-Duy, Peters, Kate M., Alvarez-Fraga, Laura, Hancock, Steven J., Ravi, Chitra, Kidd, Timothy J., Sullivan, Matthew J., Irvine, Katharine M., Beatson, Scott A., Sweet, Matthew J., Irwin, Adam D., Vukovic, Jana, Ulett, Glen C., Hasnain, Sumaira Z. and Schembri, Mark A. (2024). A convergent evolutionary pathway attenuating cellulose production drives enhanced virulence of some bacteria. Nature Communications, 15 (1) 1441, 1441. doi: 10.1038/s41467-024-45176-4 |
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2024 Journal Article THIẾT LẬP VÀ ĐÁNH GIÁ QUI TRÌNH SÀNG LỌC TRƯỚC SINH KHÔNG XÂM LẤN CHO HỘI CHỨNG MẤT ĐOẠN 22Q11.2Nguyễn, Phạm Trường Vinh, Phạm, Thị Thuỳ Trang, Đỗ, Thị Thanh Thủy, Trương, Đình Kiệt, Tăng, Hùng Sang, Nguyễn, Hoài Nghĩa, Nguyễn, Thị Tường Vy, Giang, Hoa, Phan, Minh Duy, Nguyễn, Vạn Thông, Võ, Tá Sơn, Trần, Nhật Thăng, Nguyễn, Cảnh Chương, Tăng, Xuân Hải, Phạm, Thái Hạ, Nguyễn, Thị Bích Vân and Hà, Thị Minh Thi (2024). THIẾT LẬP VÀ ĐÁNH GIÁ QUI TRÌNH SÀNG LỌC TRƯỚC SINH KHÔNG XÂM LẤN CHO HỘI CHỨNG MẤT ĐOẠN 22Q11.2. Tạp chí Y học Việt Nam, 535 (1B). doi: 10.51298/vmj.v535i1b.8400 |
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2024 Journal Article Combined functional genomic and metabolomic approaches identify new genes required for growth in human urine by multidrug-resistant Escherichia coli ST131Phan, Minh-Duy, Schirra, Horst Joachim, Nhu, Nguyen Thi Khanh, Peters, Kate M., Sarkar, Sohinee, Allsopp, Luke P., Achard, Maud E. S., Kappler, Ulrike and Schembri, Mark A. (2024). Combined functional genomic and metabolomic approaches identify new genes required for growth in human urine by multidrug-resistant Escherichia coli ST131. mBio, 15 (3) e0338823. doi: 10.1128/mbio.03388-23 |
