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2022 Journal Article Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131Phan, Minh-Duy, Peters, Kate M., Alvarez Fraga, Laura, Wallis, Steven C., Hancock, Steven, Nhu, Nguyen Thi Khanh, Forde, Brian, Bauer, Michelle J., Paterson, David L., Beatson, Scott A, Lipman, Jeffrey and Schembri, Mark A. (2022). Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131. Antimicrobial Agents and Chemotherapy, 66 (1) e02146-21, 1-11. doi: 10.1128/aac.02146-21 |
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2021 Journal Article Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer componentHancock, Steven J., Phan, Minh‐Duy, Roberts, Leah, Vu, Thu Ngoc Minh, Harris, Patrick N.A., Beatson, Scott A. and Schembri, Mark A. (2021). Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer component. Molecular Microbiology, 116 (1), 154-167. doi: 10.1111/mmi.14697 |
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2020 Journal Article Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaBHancock, Steven J., Phan, Minh-Duy, Luo, Zhenyao, Lo, Alvin W., Peters, Kate M., Nhu, Nguyen Thi Khanh, Forde, Brian M., Whitfield, Jason, Yang, Ji, Strugnell, Richard A., Paterson, David L., Walsh, Timothy R., Kobe, Bostjan, Beatson, Scott A. and Schembri, Mark A. (2020). Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB. Nature Microbiology, 5 (11), 1340-1348. doi: 10.1038/s41564-020-0775-0 |
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2020 Journal Article Uncovering novel susceptibility targets to enhance the efficacy of third-generation cephalosporins against ESBL-producing uropathogenic Escherichia coliPhan, Minh-Duy, Bottomley, Amy L., Peters, Kate M., Harry, Elizabeth J. and Schembri, Mark A. (2020). Uncovering novel susceptibility targets to enhance the efficacy of third-generation cephalosporins against ESBL-producing uropathogenic Escherichia coli. Journal of Antimicrobial Chemotherapy, 75 (6), 1415-1423. doi: 10.1093/jac/dkaa023 |
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2026 Journal Article First-Trimester Non-Invasive Prediction of Preterm Birth Using Cell-Free DNA FragmentomicsPham, My-Diem Nguyen, Phan, Minh-Tam Thi, Tran, Nhat-Thang, Vo, Ta-Son, Le, Hong-Thinh, Nguyen, Thu-Ha Thi, Nguyen, Quoc-Huy Vu, Ha, Minh-Thi Thi, Le, Tam Minh, Hoang, Diem-Tuyet Thi, Huynh, Khanh-Trang Nguyen, Nguyen, Nhan Viet, Nguyen, Chuong Canh, Bui, Thuong Chi, Nguyen, Xuan Thanh, Le, Sa Viet, Tran, Vinh Dinh, Nguyen, My-Nhi Ba, Van Nguyen, Thong, Nguyen, Tuyet-Anh Thi, Hoang, Ba Phuoc, Van Nguyen, Trong, Nguyen, Thuy-Ai Thuy, Nguyen, Toa Tri, Duong, Thang Duc, Pham, Cuong Huy, Luong, Kim-Oanh Thi, Dao, Cuong Ngoc, Van Hoang, Khanh ... Trac, Quang Thinh (2026). First-Trimester Non-Invasive Prediction of Preterm Birth Using Cell-Free DNA Fragmentomics. AJOG Global Reports 100692, 100692. doi: 10.1016/j.xagr.2026.100692 |
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2026 Journal Article Advances in understanding of plasmid biology through the application of transposon insertion sequencingHancock, Steven J., Phan, Minh-Duy and Lian, Zheng Jie (2026). Advances in understanding of plasmid biology through the application of transposon insertion sequencing. Microbiology Australia. doi: 10.1071/ma26030 |
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2026 Journal Article Genetic Etiology of Miscarriage in a Vietnamese Cohort Using CNV‐Seq and Exome SequencingThai, Minh Doan, Nguyen, Khanh Vu, Lu, Y‐Thanh, Le Nguyen, Thu‐Hang, Phan, Minh Ngoc, Van Pham, Huong, Nguyen, Trung Thanh, Phuong Bui, Hoa Thi, Thi Luong, Lan‐Anh, Duong, Chuong Hong, Nguyen, Sim Thi, Van Hoang, Son, Thi Pham, Mai‐Anh, Vo, Son Ta, Thi Tran, Ngoc‐Ha, Nhut Trinh, Thu Huong, Thi Ha, Thi Minh, Tran, Nhat‐Thang, Nguyen, Van Thong, Le, Quang Thanh, Thi Hoang, Diem‐Tuyet, Ba Nguyen, My‐Nhi, Nguyen, Yen Nhi, Le, Linh Trang, Nguyen, Tung Son, Hoang Nguyen, Thien‐Phuc, Truong, Dinh‐Kiet, Thi Do, Thanh‐Thuy, Tran, Uyen Vu ... Tang, Hung‐Sang (2026). Genetic Etiology of Miscarriage in a Vietnamese Cohort Using CNV‐Seq and Exome Sequencing. Prenatal Diagnosis pd.70215. doi: 10.1002/pd.70215 |
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2026 Journal Article Yad fimbriae are triggered by host cues and enhance extraintestinal pathogenic Escherichia coli tissue colonisation during bloodstream infectionEllison, Chloe, Cottam, Curtis, Lian, Zheng Jie, Onur, Tugce, Choudhry, Burhan A., Ong, Yvette Yu Ting, Phan, Minh-Duy, Schembri, Mark A. and Connolly, James P. R. (2026). Yad fimbriae are triggered by host cues and enhance extraintestinal pathogenic Escherichia coli tissue colonisation during bloodstream infection. PLOS Pathogens, 22 (6) e1014299, e1014299-e1014299. doi: 10.1371/journal.ppat.1014299 |
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2026 Conference Publication Ascites bactericidal capacity in patients with decompensated cirrhosisRatnasekera, Isanka, Phan, Min-Duy, Nguyen, Nhu, Jessen, Eline, Keshvari, Sahar, Ong, Yvette, Kidd, Timothy, Hancock, Steven, Hume, David, Powell, Elizabeth, Sweet, Matthew, Schembri, Mark and Irvine, Katharine (2026). Ascites bactericidal capacity in patients with decompensated cirrhosis. 61st Annual Meeting of the European-Association-for-the-Study-of-Diabetes (EASD), Vienna Austria, Sep 15-19, 2025. AMSTERDAM: ELSEVIER. |
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2026 Journal Article FRI-403 Ascites bactericidal capacity in patients with decompensated cirrhosisRatnasekera, Isanka, Phan, Min-Duy, Nguyen, Nhu, Jessen, Eline, Keshvari, Sahar, Ong, Yvette, Kidd, Timothy, Hancock, Steven, Hume, David, Powell, Elizabeth, Sweet, Matthew, Schembri, Mark and Irvine, Katharine (2026). FRI-403 Ascites bactericidal capacity in patients with decompensated cirrhosis. Journal of Hepatology, 84, S170-S171. doi: 10.1016/s0168-8278(26)00664-1 |
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2026 Journal Article 185 Recurrent TRIO De Novo Variants Drive a Novel Neurodevelopmental Syndrome Featuring Human Congenital HydrocephalusDennis, Evan, Mehta, Neel, Allington, Garrett, Mekbib, Kedous Y., Davalan, William, Phan, Duy, Haider, Shozeb and Kahle, Kristopher T. (2026). 185 Recurrent TRIO De Novo Variants Drive a Novel Neurodevelopmental Syndrome Featuring Human Congenital Hydrocephalus. Neurosurgery, 72 (Supplement_1), 37-37. doi: 10.1227/neu.0000000000003964_185 |
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2026 Journal Article Genomic and AHPND pathogenesis characterization of a novel Vibrio parahaemolyticus strain carrying an ISVal1-like insertion in pirBvpHuynh, Tuan-Binh, Le, Manh-Liem, Bui-Nguyen, Tram-Anh, Ha, Thi Phuong Trinh, Van, Thi Thu Hao, Vo, Van-Tuan, Phan, Minh-Duy and Tran-Van, Hieu (2026). Genomic and AHPND pathogenesis characterization of a novel Vibrio parahaemolyticus strain carrying an ISVal1-like insertion in pirBvp. Journal of Invertebrate Pathology, 217 108606. doi: 10.1016/j.jip.2026.108606 |
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2026 Journal Article Natural maternal immunity protects neonates from Escherichia coli sepsisDiep, Raymond E., Adhikari, Ujjwal, Gokce Tezel, Kubra, Pham, Giang, Burrell, Allison R., Staat, Mary A., Nhu, Nguyen Thi Khanh, Phan, Minh-Duy, Peters, Kate M., Schembri, Mark A., Saunders, Scott H., Haslam, David B., Erickson, John J., Chavez-Bueno, Susana and Way, Sing Sing (2026). Natural maternal immunity protects neonates from Escherichia coli sepsis. Nature, 653 (8114), 519-527. doi: 10.1038/s41586-026-10225-z |
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2026 Journal Article Bacterial reporter–paired scRNA sequencing reveals cross talk between zinc starvation and zinc toxicity in macrophage antibacterial defensevon Pein, Jessica B., Andersen, Stacey B., Xu, Jon, Phan, Minh-Duy, Dalton, Emma K., Koczerka, Michael, Stocks, Claudia J., Curson, James E. B., Vandeleur, Zoe, Condon, Nicholas D., Hancock, Steven J., Nefzger, Christian M., Palpant, Nathan J., Ramnath, Divya, Kapetanovic, Ronan, Schembri, Mark A. and Sweet, Matthew J. (2026). Bacterial reporter–paired scRNA sequencing reveals cross talk between zinc starvation and zinc toxicity in macrophage antibacterial defense. Proceedings of the National Academy of Sciences, 123 (11) e2530503123, 1-12. doi: 10.1073/pnas.2530503123 |
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2026 Journal Article Multimodal analysis of cell-free DNA to improve early detection of gastric cancerLong, Vo Duy, Huynh, Le Anh Khoa, Vo, Dac Ho, Nguyen, Thi Hue Hanh, Van, Thi Tuong Vi, Nguyen, Giang Thi Huong, Doan, Thuy Nguyen, Nguyen, Viet Hai, Tran, Quang Dat, Dang, Quang Thong, Nguyen, Vu Tuan Anh, Ho, Le Minh Quoc, Ha, Thi Phuong Dung, Dang, Thi Ngoc Dung, Nguyen, Pham Thanh Nhan, Nguyen, Khac Tien, Ho, Van Chien, Le, Thi Loc, Nguyen, Thi Hong Nhung, Tu, Ngoc Hieu, Tran, Thanh Son, Jasmine, Thanh Xuan, Vo, Thi Loan, Nai, Thi Huong Thoang, Tran, Thuy Trang, Truong, My Hoang, Tran, Ngan Chau, Nguyen, Thanh Cong, Nguyen, Thi Truc ... Tran, Le Son (2026). Multimodal analysis of cell-free DNA to improve early detection of gastric cancer. BMC Cancer, 26 (1) 416, 1. doi: 10.1186/s12885-026-15720-0 |
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2026 Journal Article Identification of public neoantigens with broad HLA class I coverage as candidates for off-the-shelf cancer vaccine development in colorectal cancerTran, Diem TP, Nguyen, Bui Que Tran, Nguyen, Huu Thinh, Pham, Thi Mong Quynh, Nguyen, Dinh Viet Linh, Nguyen, Thanh Nhan, Ho, Thi Kim Cuong, Nguyen, Vy, Nguyen, Pham Trung Dung, Tran, Duc Huy, Tran, Thanh Sang, Pham, Truong-Vinh Ngoc, Le, Minh-Triet, Giang, Hoa, Nguyen, Hoai Nghia, Phan, Minh-Duy and Tran, Le Son (2026). Identification of public neoantigens with broad HLA class I coverage as candidates for off-the-shelf cancer vaccine development in colorectal cancer. Frontiers in Immunology, 17 1686224, 1-15. doi: 10.3389/fimmu.2026.1686224 |
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2026 Journal Article NeuO-mediated O-acetylation of uropathogenic Escherichia coli K1 capsule enhances resistance to phage and neutrophil killingWalker, Lachlan L., Nhu, Nguyen Thi Khanh, Lian, Zheng Jie, Peters, Kate M., Monteleone, Mercedes, Connolly, James P. R., Walker, Mark J., Forde, Brian M., Schroder, Kate, Sweet, Matthew J., Phan, Minh-Duy and Schembri, Mark A. (2026). NeuO-mediated O-acetylation of uropathogenic Escherichia coli K1 capsule enhances resistance to phage and neutrophil killing. Journal of Bacteriology, 208 (3) e00610-25, 1-13. doi: 10.1128/jb.00610-25 |
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2026 Journal Article Convergence of plasmid-driven virulence and antibiotic resistance in Escherichia coliLian, Zheng Jie, Nhu, Nguyen Thi Khanh, Ravi, Chitra, Chang, Chyden, Martinez-Roman, Irene, Phan, Minh-Duy and Schembri, Mark A. (2026). Convergence of plasmid-driven virulence and antibiotic resistance in Escherichia coli. Nature Communications, 17 (1) 505, 1-13. doi: 10.1038/s41467-025-67202-9 |
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2026 Journal Article PP01.65: A Cost-effective Multimodal cfDNA Assay Improves Lung Cancer Detection in Symptomatic Patients and High-Risk Screening CohortsChi Nguyen, Van Thien, Vo, Dac Ho, Tran, Trung Hieu, Pham, Ngoc Tan, Nguyen, Trong Hieu, Van Phan, Thi, Dao, Thi Huyen, Phuc Nguyen, Huu Tam, Dang Nguyen, Luu Hong, Nguyen, Duy Sinh, Tang, Hung Sang, Giang, Hoa, Phan, Minh Duy, Nguyen, Hoai-Nghia and Tran, Le Son (2026). PP01.65: A Cost-effective Multimodal cfDNA Assay Improves Lung Cancer Detection in Symptomatic Patients and High-Risk Screening Cohorts. Journal of Thoracic Oncology, 21 (1), S32-S33. doi: 10.1016/j.jtho.2025.12.065 |
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2025 Journal Article Tumor genomic and transcriptomic analysis integrated with liquid biopsy ctDNA monitoring: analytical validation and clinical insightsTran, Nam H. B., Nguyen, Thien‐Phuc Hoang, Bui, Vinh Quang, Le, Vu Thuong, Mai, Trong Khoa, Nguyen Hoang, Van‐Anh, Nguyen, Tien Anh, Nguyen, Minh‐Duc, Pham, Ha‐Hieu, Vo, Tho Thi Le, Ngo, My T. T., Nguyen, Du Quyen, Nguyen, Duy Sinh, Nguyen, Hoai‐Nghia, Phan, Minh‐Duy, Giang, Hoa and Tu, Lan N. (2025). Tumor genomic and transcriptomic analysis integrated with liquid biopsy ctDNA monitoring: analytical validation and clinical insights. Cancer Medicine, 14 (23) e71465, 23. doi: 10.1002/cam4.71465 |
