Skip to menu Skip to content Skip to footer

2022

Journal Article

Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131

Phan, Minh-Duy, Peters, Kate M., Alvarez Fraga, Laura, Wallis, Steven C., Hancock, Steven, Nhu, Nguyen Thi Khanh, Forde, Brian, Bauer, Michelle J., Paterson, David L., Beatson, Scott A, Lipman, Jeffrey and Schembri, Mark A. (2022). Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131. Antimicrobial Agents and Chemotherapy, 66 (1) e02146-21, 1-11. doi: 10.1128/aac.02146-21

Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131

2021

Journal Article

Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer component

Hancock, Steven J., Phan, Minh‐Duy, Roberts, Leah, Vu, Thu Ngoc Minh, Harris, Patrick N.A., Beatson, Scott A. and Schembri, Mark A. (2021). Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer component. Molecular Microbiology, 116 (1), 154-167. doi: 10.1111/mmi.14697

Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer component

2020

Journal Article

Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB

Hancock, Steven J., Phan, Minh-Duy, Luo, Zhenyao, Lo, Alvin W., Peters, Kate M., Nhu, Nguyen Thi Khanh, Forde, Brian M., Whitfield, Jason, Yang, Ji, Strugnell, Richard A., Paterson, David L., Walsh, Timothy R., Kobe, Bostjan, Beatson, Scott A. and Schembri, Mark A. (2020). Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB. Nature Microbiology, 5 (11), 1340-1348. doi: 10.1038/s41564-020-0775-0

Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB

2020

Journal Article

Uncovering novel susceptibility targets to enhance the efficacy of third-generation cephalosporins against ESBL-producing uropathogenic Escherichia coli

Phan, Minh-Duy, Bottomley, Amy L., Peters, Kate M., Harry, Elizabeth J. and Schembri, Mark A. (2020). Uncovering novel susceptibility targets to enhance the efficacy of third-generation cephalosporins against ESBL-producing uropathogenic Escherichia coli. Journal of Antimicrobial Chemotherapy, 75 (6), 1415-1423. doi: 10.1093/jac/dkaa023

Uncovering novel susceptibility targets to enhance the efficacy of third-generation cephalosporins against ESBL-producing uropathogenic Escherichia coli

2025

Journal Article

Cost-effective shallow genome-wide sequencing for profiling plasma cfDNA signatures to enhance lung cancer detection

Nguyen, Van Thien Chi, Vo, Dac Ho, Tran, Thi Trang, Tran, Thanh Truong, Nguyen, Thi Hue Hanh, Vo, Truong Dang Huy, Van, Thi Tuong Vi, Vu, Thi Luyen, Lam, Minh Quang, Nguyen, Giang Thi Huong, Tran, Trung Hieu, Pham, Ngoc Tan, Trac, Quang Thinh, Nguyen, Trong Hieu, Phan, Thi Van, Dao, Thi Huyen, Nguyen, Huu Tam Phuc, Nguyen, Luu Hong Dang, Nguyen, Duy Sinh, Tang, Hung Sang, Giang, Hoa, Phan, Minh Duy, Nguyen, Hoai-Nghia and Tran, Le Son (2025). Cost-effective shallow genome-wide sequencing for profiling plasma cfDNA signatures to enhance lung cancer detection. Future Oncology, 21 (11), 1391-1402. doi: 10.1080/14796694.2025.2483154

Cost-effective shallow genome-wide sequencing for profiling plasma cfDNA signatures to enhance lung cancer detection

2025

Journal Article

Targeting cognitive biases to improve social cognition and social emotional health

Birch, Susan A. J., Stewardson, Charlotte I., Rho, Kate, Kataria, Ashali, Craig, Shannon M., Phan, Minh D. H., Savi, Irene, Voronkova, Kseniia, Lee, Jenny, Choudhary, Gayatri and Torjani, Diba (2025). Targeting cognitive biases to improve social cognition and social emotional health. Frontiers in Psychology, 16 1534125. doi: 10.3389/fpsyg.2025.1534125

Targeting cognitive biases to improve social cognition and social emotional health

2025

Journal Article

Characteristics and diversity of Vibrio parahaemolyticus causing acute hepatopancreatic necrosis disease in Vietnam

Huynh, Tuan-Binh, Mai-Hoang, Thuy-Dung, Bui-Nguyen, Tram-Anh, Ha, Trinh Thi Phuong, Phan, Minh-Duy and Tran-Van, Hieu (2025). Characteristics and diversity of Vibrio parahaemolyticus causing acute hepatopancreatic necrosis disease in Vietnam. Aquaculture and Fisheries, 10 (2), 202-209. doi: 10.1016/j.aaf.2023.10.004

Characteristics and diversity of Vibrio parahaemolyticus causing acute hepatopancreatic necrosis disease in Vietnam

2025

Journal Article

Prospective validation study: a non-invasive circulating tumor DNA-based assay for simultaneous early detection of multiple cancers in asymptomatic adults

Nguyen, Luu Hong Dang, Nguyen, Thi Hue Hanh, Le, Van Hoi, Bui, Vinh Quang, Nguyen, Lan Hieu, Pham, Nhu Hiep, Phan, Thanh Hai, Nguyen, Huu Thinh, Tran, Van Song, Bui, Chi Viet, Vo, Van Kha, Nguyen, Pham Thanh Nhan, Dang, Ha Huu Phuoc, Pham, Van Dung, Cao, Van Thinh, Phan, Ngoc Minh, Tieu, Ba Linh, Nguyen, Giang Thi Huong, Vo, Dac Ho, Tran, Trung Hieu, Nguyen, Thanh Dat, Nguyen, Van Thien Chi, Nguyen, Trong Hieu, Tran, Vu Uyen, Le, Minh Phong, Tran, Thi Minh Thu, Nguyen Nguyen, Minh, Van, Thi Tuong Vi, Nguyen, Anh Nhu ... Tran, Le Son (2025). Prospective validation study: a non-invasive circulating tumor DNA-based assay for simultaneous early detection of multiple cancers in asymptomatic adults. BMC Medicine, 23 (1) 90, 1. doi: 10.1186/s12916-025-03929-y

Prospective validation study: a non-invasive circulating tumor DNA-based assay for simultaneous early detection of multiple cancers in asymptomatic adults

2025

Journal Article

Combination of Hotspot Mutations With Methylation and Fragmentomic Profiles to Enhance Multi‐Cancer Early Detection

Nguyen, Thi Hue Hanh, Vu, Giang Hoang, Nguyen, Tu Thi, Nguyen, Tuan Anh, Tran, Vu Uyen, Vu, Luyen Thi, Nguyen, Giang Thi Huong, Nguyen, Nhat Duy, Tran, Trung Hieu, Nguyen, Van Thien Chi, Nguyen, Thanh Dat, Nguyen, Trong Hieu, Vo, Dac Ho, Van, Thi Tuong Vi, Do, Thanh Thi, Le, Minh Phong, Huynh, Le Anh Khoa, Nguyen, Duy Sinh, Tang, Hung Sang, Nguyen, Hoai‐Nghia, Phan, Minh‐Duy, Giang, Hoa, Tu, Lan N. and Tran, Le Son (2025). Combination of Hotspot Mutations With Methylation and Fragmentomic Profiles to Enhance Multi‐Cancer Early Detection. Cancer Medicine, 14 (1), 1. doi: 10.1002/cam4.70575

Combination of Hotspot Mutations With Methylation and Fragmentomic Profiles to Enhance Multi‐Cancer Early Detection

2024

Journal Article

epiTCR-KDA: knowledge distillation model on dihedral angles for TCR-peptide prediction

Pham, My-Diem Nguyen, Su, Chinh Tran-To, Nguyen, Thanh-Nhan, Nguyen, Hoai-Nghia, Nguyen, Dinh Duy An, Giang, Hoa, Nguyen, Dinh-Thuc, Phan, Minh-Duy and Nguyen, Vy (2024). epiTCR-KDA: knowledge distillation model on dihedral angles for TCR-peptide prediction. Bioinformatics Advances, 4 (1) vbae190. doi: 10.1093/bioadv/vbae190

epiTCR-KDA: knowledge distillation model on dihedral angles for TCR-peptide prediction

2024

Journal Article

The T cell receptor β chain repertoire of tumor infiltrating lymphocytes improves neoantigen prediction and prioritization

Pham, Thi Mong Quynh, Nguyen, Thanh Nhan, Tran Nguyen, Bui Que, Diem Tran, Thi Phuong, Diem Pham, Nguyen My, Phuc Nguyen, Hoang Thien, Cuong Ho, Thi Kim, Linh Nguyen, Dinh Viet, Nguyen, Huu Thinh, Tran, Duc Huy, Tran, Thanh Sang, Pham, Truong Vinh Ngoc, Le, Minh Triet, Vy Nguyen, Thi Tuong, Phan, Minh-Duy, Giang, Hoa, Nguyen, Hoai-Nghia and Tran, Le Son (2024). The T cell receptor β chain repertoire of tumor infiltrating lymphocytes improves neoantigen prediction and prioritization. eLife, 13. doi: 10.7554/elife.94658.3

The T cell receptor β chain repertoire of tumor infiltrating lymphocytes improves neoantigen prediction and prioritization

2024

Journal Article

An ovine septic shock model of live bacterial infusion

Obonyo, Nchafatso G., Raman, Sainath, Suen, Jacky Y., Peters, Kate M., Phan, Minh-Duy, Passmore, Margaret R., Bouquet, Mahe, Wilson, Emily S., Hyslop, Kieran, Palmieri, Chiara, White, Nicole, Sato, Kei, Farah, Samia M., Gandini, Lucia, Liu, Keibun, Fior, Gabriele, Heinsar, Silver, Ijuin, Shinichi, Kyun Ro, Sun, Abbate, Gabriella, Ainola, Carmen, Sato, Noriko, Lundon, Brooke, Portatadino, Sofia, Rachakonda, Reema H., Schneider, Bailey, Harley, Amanda, See Hoe, Louise E., Schembri, Mark A. ... Fraser, John F. (2024). An ovine septic shock model of live bacterial infusion. Intensive Care Medicine Experimental, 12 (1) 94, 1-20. doi: 10.1186/s40635-024-00684-x

An ovine septic shock model of live bacterial infusion

2024

Journal Article

Evolution of the pheV-tRNA integrated genomic island in Escherichia coli

Nhu, Nguyen Thi Khanh, Forde, Brian M., Ben Zakour, Nouri L., Phan, Minh-Duy, Roberts, Leah W., Beatson, Scott A. and Schembri, Mark A. (2024). Evolution of the pheV-tRNA integrated genomic island in Escherichia coli. PLoS Genetics, 20 (10) e1011459, e1011459. doi: 10.1371/journal.pgen.1011459

Evolution of the pheV-tRNA integrated genomic island in Escherichia coli

2024

Journal Article

Evaluation of a multimodal ctDNA-based assay for detection of aggressive cancers lacking standard screening tests

Thien Nguyen, Chi Van, Hanh Nguyen, Thi Hue, Vo, Dac Ho, Vi Van, Thi Tuong, Huong Nguyen, Giang Thi, Tran, Trung Hieu, Nguyen, Trong Hieu, Khoa Huynh, Le Anh, Nguyen, Thanh Dat, Tran, Nhat-Huy, Thi Ha, Thi Minh, Quynh Le, Phan Tuong, Truong, Xuan Long, Nguyen, Hong-Dang Luu, Tran, Uyen Vu, Hoang, Thanh Quang, Nguyen, Viet Binh, Le, Van Cuong, Nguyen, Xuan Chung, Phuong Nguyen, Thi Minh, Nguyen, Van Hung, Nhat Tran, Nu Thien, Quynh Dang, Thi Ngoc, Tran, Manh Hoang, Nguyen, Phuc Nguyen, Dao, Thi Huyen, Phuc Nguyen, Huu Tam, Tran, Nhat-Thang, Phan, Thi Van ... Tran, Le Son (2024). Evaluation of a multimodal ctDNA-based assay for detection of aggressive cancers lacking standard screening tests. Future Oncology, ahead-of-print (ahead-of-print), 1-11. doi: 10.1080/14796694.2024.2413266

Evaluation of a multimodal ctDNA-based assay for detection of aggressive cancers lacking standard screening tests

2024

Journal Article

Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales

Graf, Fabrice E., Goodman, Richard N., Gallichan, Sarah, Forrest, Sally, Picton-Barlow, Esther, Fraser, Alice J., Phan, Minh-Duy, Mphasa, Madalitso, Hubbard, Alasdair T. M., Musicha, Patrick, Schembri, Mark A., Roberts, Adam P., Edwards, Thomas, Lewis, Joseph M. and Feasey, Nicholas A. (2024). Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales. Nature Communications, 15 (1) 9019, 1-12. doi: 10.1038/s41467-024-53391-2

Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales

2024

Journal Article

The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen

White, Rhys T., Ashcroft, Melinda M., Bauer, Michelle J., Bell, Jan, Butkiewicz, Dominika, Álvarez-Fraga, Laura, Gibson, Justine S., Kidsley, Amanda K., Mollinger, Joanne L., Peters, Kate M., Phan, Minh-Duy, Roberts, Leah W., Rogers, Benjamin A., Schembri, Mark A., Trott, Darren J., Turnidge, John, Forde, Brian M. and Beatson, Scott A. (2024). The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen. Access Microbiology, 6 (10) 000894.v3, 1-15. doi: 10.1099/acmi.0.000894.v3

The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen

2024

Journal Article

Breast cancer risk assessment based on susceptibility genes and polygenic risk score in Vietnamese women

Vinh, Dao Nguyen, Thi Ngoc Nguyen, Thanh, Nguyen Tran, Tuan-Anh, Doan, Phuoc-Loc, Nguyen Hoang, Van-Anh, Phan, Minh-Duy, Giang, Hoa, Nguyen, Hoai-Nghia, Nguyen, Hue Thi and Tu, Lan N. (2024). Breast cancer risk assessment based on susceptibility genes and polygenic risk score in Vietnamese women. BJC Reports, 2 (1) 80, 1-8. doi: 10.1038/s44276-024-00100-7

Breast cancer risk assessment based on susceptibility genes and polygenic risk score in Vietnamese women

2024

Journal Article

Modified Tn 7 transposon vectors for controlled chromosomal gene expression

Chang, Chyden, Phan, Minh-Duy and Schembri, Mark A. (2024). Modified Tn 7 transposon vectors for controlled chromosomal gene expression. Applied and Environmental Microbiology, 90 (10) e01556-24, 1-13. doi: 10.1128/aem.01556-24

Modified Tn 7 transposon vectors for controlled chromosomal gene expression

2024

Journal Article

A consultation and work-up diagnosis protocol for a multicancer early detection test: a case series study

Dang Nguyen, Luu Hong, Tieu, Ba Linh, Nguyen, Thi Thanh, Ha, Nhung Phuong, Huong Nguyen, Giang Thi, Hanh Nguyen, Thi Hue, Le, Van Hoi, Bui, Vinh Quang, Nguyen, Lan Hieu, Pham, Nhu Hiep, Phan, Thanh Hai, Nguyen, Huu Thinh, Tran, Van Song, Bui, Chi Viet, Vo, Van Kha, Nhan Nguyen, Pham Thanh, Phuoc Dang, Ha Huu, Pham, Van Dung, Cao, Van Thinh, Phan, Ngoc Minh, Nguyen, Van Tung, Quyen Le, Thi Le, Luong, Thi Lan-Anh, Phuong Doan, Thi Kim, Phan, Canh Duy, Nguyen, Thanh Xuan, Pham, Nguyen Tuong, Nguyen, Bao Toan, Thuy Pham, Thi Thu ... Nguyen, Duy Sinh (2024). A consultation and work-up diagnosis protocol for a multicancer early detection test: a case series study. Future Science OA, 10 (1). doi: 10.1080/20565623.2024.2395244

A consultation and work-up diagnosis protocol for a multicancer early detection test: a case series study

2024

Other Outputs

The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen.

White, Rhys T., Ashcroft, Melinda A., Bauer, Michelle J., Bell, Jan, Butkiewicz, Dominika, Álvarez-Fraga, Laura, Gibson, Justine S., Kidsley, Amanda K., Mollinger, Joanne L., Peters, Kate M., Phan, Duy, Roberts, Leah W., Rogers, Benjamin, Schembri, Mark, Trott, Darren J., Turnidge, John, Forde, Brian M. and Beatson, Scott A. (2024). The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen.. doi: 10.1099/acmi.0.000894.v2

The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen.