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2021 Journal Article Improved node culture methods for rapid vegetative propagation of switchgrass (Panicum virgatum L.)Wang, Yongqin, Dong, Weihong, Saha, Malay C., Udvardi, Michael K. and Kang, Yun (2021). Improved node culture methods for rapid vegetative propagation of switchgrass (Panicum virgatum L.). BMC plant biology, 21 (1) 128. doi: 10.1186/s12870-021-02903-z |
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2021 Journal Article Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrassLovell, John T., MacQueen, Alice H., Mamidi, Sujan, Bonnette, Jason, Jenkins, Jerry, Napier, Joseph D., Sreedasyam, Avinash, Healey, Adam, Session, Adam, Shu, Shengqiang, Barry, Kerrie, Bonos, Stacy, Boston, LoriBeth, Daum, Christopher, Deshpande, Shweta, Ewing, Aren, Grabowski, Paul P., Haque, Taslima, Harrison, Melanie, Jiang, Jiming, Kudrna, Dave, Lipzen, Anna, Pendergast, Thomas H., Plott, Chris, Qi, Peng, Saski, Christopher A., Shakirov, Eugene V., Sims, David, Sharma, Manoj ... Schmutz, Jeremy (2021). Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature, 590 (7846), 438-444. doi: 10.1038/s41586-020-03127-1 |
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2021 Journal Article Distinguishing HapMap accessions through recursive set partitioning in hierarchical decision treesZhang, Wenchao, Kang, Yun, Cheng, Xiaofei, Wen, Jiangqi, Zhang, Hongying, Torres-Jerez, Ivone, Krom, Nick, Udvardi, Michael K., Scheible, Wolf-Rüdiger and Zhao, Patrick Xuechun (2021). Distinguishing HapMap accessions through recursive set partitioning in hierarchical decision trees. Frontiers in Plant Science, 12 628421. doi: 10.3389/fpls.2021.628421 |
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2021 Journal Article Corrigendum: A Plant Gene Encoding One-Heme and Two-Heme Hemoglobins With Extreme Reactivities Toward Diatomic Gases and Nitrite (Front. Plant Sci, (2020), 11, (600336), 10.3389/fpls.2020.600336)Villar, Irene, Larrainzar, Estíbaliz, Milazzo, Lisa, Pérez-Rontomé, Carmen, Rubio, Maria C., Smulevich, Giulietta, Martínez, Jesús I., Wilson, Michael T., Reeder, Brandon, Huertas, Raul, Abbruzzetti, Stefania, Udvardi, Michael and Becana, Manuel (2021). Corrigendum: A Plant Gene Encoding One-Heme and Two-Heme Hemoglobins With Extreme Reactivities Toward Diatomic Gases and Nitrite (Front. Plant Sci, (2020), 11, (600336), 10.3389/fpls.2020.600336). Frontiers in Plant Science, 11 637797. doi: 10.3389/fpls.2020.637797 |
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2021 Journal Article Transcriptional, metabolic, physiological and developmental responses of switchgrass to phosphorus limitationDing, Na, Huertas, Raul, Torres‐Jerez, Ivone, Liu, Wei, Watson, Bonnie, Scheible, Wolf‐Rüdiger and Udvardi, Michael (2021). Transcriptional, metabolic, physiological and developmental responses of switchgrass to phosphorus limitation. Plant, Cell and Environment, 44 (1), 186-202. doi: 10.1111/pce.13872 |
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2021 Journal Article PHO1 family members transport phosphate from infected nodule cells to bacteroids in Medicago truncatulaNguyen, Nga N. T., Clua, Joaquin, Vetal, Pallavi V., Vuarambon, Dominique Jacques, De Bellis, Damien, Pervent, Marjorie, Lepetit, Marc, Udvardi, Michael, Valentine, Alexander J. and Poirier, Yves (2021). PHO1 family members transport phosphate from infected nodule cells to bacteroids in Medicago truncatula. Plant Physiology, 185 (1), 196-209. doi: 10.1093/plphys/kiaa016 |
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2021 Journal Article Nitrogen fertilization reduces nitrogen fixation activity of diverse diazotrophs in switchgrass rootsBahulikar, Rahul A., Chaluvadi, Srinivasa R., Torres-Jerez, Ivone, Mosali, Jagadish, Bennetzen, Jeffrey L. and Udvardi, Michael (2021). Nitrogen fertilization reduces nitrogen fixation activity of diverse diazotrophs in switchgrass roots. Phytobiomes Journal, 5 (1), 80-87. doi: 10.1094/pbiomes-09-19-0050-fi |
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2020 Journal Article Lotus japonicus karrikin receptors display divergent ligand-binding specificities and organ-dependent redundancyCarbonnel, Samy, Torabi, Salar, Griesmann, Maximilian, Bleek, Elias, Tang, Yuhong, Buchka, Stefan, Basso, Veronica, Shindo, Mitsuru, Boyer, François-Didier, Wang, Trevor L., Udvardi, Michael, Waters, Mark T. and Gutjahr, Caroline (2020). Lotus japonicus karrikin receptors display divergent ligand-binding specificities and organ-dependent redundancy. PLoS Genetics, 16 (12 December) e1009249, e1009249. doi: 10.1371/journal.pgen.1009249 |
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2020 Journal Article GmVTL1a is an iron transporter on the symbiosome membrane of soybean with an important role in nitrogen fixationBrear, Ella M., Bedon, Frank, Gavrin, Aleksandr, Kryvoruchko, Igor S., Torres-Jerez, Ivone, Udvardi, Michael K., Day, David A. and Smith, Penelope M. C. (2020). GmVTL1a is an iron transporter on the symbiosome membrane of soybean with an important role in nitrogen fixation. New Phytologist, 228 (2), 667-681. doi: 10.1111/nph.16734 |
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2020 Journal Article Silencing Folylpolyglutamate Synthetase1 (FPGS1) in Switchgrass (Panicum virgatum L.) improves lignocellulosic biofuel productionMazarei, Mitra, Baxter, Holly L., Srivastava, Avinash, Li, Guifen, Xie, Hongli, Dumitrache, Alexandru, Rodriguez, Miguel, Natzke, Jace M., Zhang, Ji-Yi, Turner, Geoffrey B., Sykes, Robert W., Davis, Mark F., Udvardi, Michael K., Wang, Zeng-Yu, Davison, Brian H., Blancaflor, Elison B., Tang, Yuhong and Stewart, Charles Neal (2020). Silencing Folylpolyglutamate Synthetase1 (FPGS1) in Switchgrass (Panicum virgatum L.) improves lignocellulosic biofuel production. Frontiers in Plant Science, 11 843. doi: 10.3389/fpls.2020.00843 |
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2020 Journal Article MtSSPdb: the Medicago truncatula small secreted peptide database1[OPEN]Boschiero, Clarissa, Dai, Xinbin, Lundquist, Peter Knut, Roy, Sonali, Christian de Bang, Thomas, Zhang, Shulan, Zhuang, Zhaohong, Torres-Jerez, Ivone, Udvardi, Michael K., Scheible, Wolf-Rüdiger and Zhao, Patrick Xuechun (2020). MtSSPdb: the Medicago truncatula small secreted peptide database1[OPEN]. Plant Physiology, 183 (1), 399-413. doi: 10.1104/pp.19.01088 |
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2020 Journal Article Transcriptomic and metabolomic adaptation of Nannochloropsis gaditana grown under different light regimesPatelou, Maria, Infante, Carlos, Dardelle, Flavien, Randewig, Dörte, Kouri, Evangelia D., Udvardi, Michael K., Tsiplakou, Eleni, Mantecón, Lalia and Flemetakis, Emmanouil (2020). Transcriptomic and metabolomic adaptation of Nannochloropsis gaditana grown under different light regimes. Algal Research, 45 101735. doi: 10.1016/j.algal.2019.101735 |
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2019 Journal Article The future of legume genetic data resources: challenges, opportunities, and prioritiesBauchet, Guillaume J., Bett, Kirstin E., Cameron, Connor T., Campbell, Jacqueline D., Cannon, Ethalinda K. S., Cannon, Steven B., Carlson, Joseph W., Chan, Agnes, Cleary, Alan, Close, Timothy J., Cook, Douglas R., Cooksey, Amanda M., Coyne, Clarice, Dash, Sudhansu, Dickstein, Rebecca, Farmer, Andrew D., Fernández-Baca, David, Hokin, Samuel, Jones, Elizabeth S., Kang, Yun, Monteros, Maria J., Muñoz-Amatriaín, María, Mysore, Kirankumar S., Pislariu, Catalina I., Richards, Chris, Shi, Ainong, Town, Christopher D., Udvardi, Michael, von Wettberg, Eric Bishop ... Zhao, Patrick X. (2019). The future of legume genetic data resources: challenges, opportunities, and priorities. Legume Science, 1 (1) e16, 1-15. doi: 10.1002/leg3.16 |
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2019 Journal Article Celebrating 20 years of genetic discoveries in legume nodulation and symbiotic nitrogen fixationRoy, Sonali, Liu, Wei, Nandety, Raja Sekhar, Crook, Ashley, Mysore, Kirankumar S., Pislariu, Catalina I., Frugoli, Julia, Dickstein, Rebecca and Udvardi, Michael K. (2019). Celebrating 20 years of genetic discoveries in legume nodulation and symbiotic nitrogen fixation. The Plant Cell, 32 (1), 15-41. doi: 10.1105/tpc.19.00279 |
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2019 Journal Article GWASpro: A high-performance genome-wide association analysis serverKim, Bongsong, Dai, Xinbin, Zhang, Wenchao, Zhuang, Zhaohong, Sanchez, Darlene L, Lübberstedt, Thomas, Kang, Yun, Udvardi, Michael K., Beavis, William D., Xu, Shizhong and Zhao, Patrick X. (2019). GWASpro: A high-performance genome-wide association analysis server. Bioinformatics, 35 (14) bty989, 2512-2514. doi: 10.1093/bioinformatics/bty989 |
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2019 Journal Article A protein complex required for polar growth of rhizobial infection threadsLiu, Cheng-Wu, Breakspear, Andrew, Stacey, Nicola, Findlay, Kim, Nakashima, Jin, Ramakrishnan, Karunakaran, Liu, Miaoxia, Xie, Fang, Endre, Gabriella, de Carvalho-Niebel, Fernanda, Oldroyd, Giles E. D., Udvardi, Michael K., Fournier, Joëlle and Murray, Jeremy D. (2019). A protein complex required for polar growth of rhizobial infection threads. Nature Communications, 10 (1) 2848. doi: 10.1038/s41467-019-10029-y |
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2019 Journal Article Genome-wide analysis of flanking sequences reveals that Tnt1 insertion is positively correlated with gene methylation in Medicago truncatulaSun, Liang, Gill, Upinder S., Nandety, Raja Sekhar, Kwon, Soonil, Mehta, Perdeep, Dickstein, Rebecca, Udvardi, Michael K., Mysore, Kirankumar S. and Wen, Jiangqi (2019). Genome-wide analysis of flanking sequences reveals that Tnt1 insertion is positively correlated with gene methylation in Medicago truncatula. The Plant Journal, 98 (6), 1106-1119. doi: 10.1111/tpj.14291 |
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2019 Journal Article The nodule-specific PLAT domain protein NPD1 is required for nitrogen-fixing symbiosisPislariu, Catalina I., Sinharoy, Senjuti, Torres-Jerez, Ivone, Nakashima, Jin, Blancaflor, Elison B. and Udvardi, Michael K. (2019). The nodule-specific PLAT domain protein NPD1 is required for nitrogen-fixing symbiosis. Plant Physiology, 180 (3), 1480-1497. doi: 10.1104/pp.18.01613 |
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2019 Journal Article Genome‐wide association analysis of salinity responsive traits in Medicago truncatulaKang, Yun, Torres‐Jerez, Ivone, An, Zewei, Greve, Veronica, Huhman, David, Krom, Nicholas, Cui, Yuehua and Udvardi, Michael (2019). Genome‐wide association analysis of salinity responsive traits in Medicago truncatula. Plant, Cell and Environment, 42 (5), 1513-1531. doi: 10.1111/pce.13508 |
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2018 Journal Article Functional analysis of cellulose synthase CesA4 and CesA6 genes in switchgrass (Panicum virgatum) by overexpression and RNAi-mediated gene silencingMazarei, Mitra, Baxter, Holly L, Li, Mi, Biswal, Ajaya K, Kim, Keonhee, Meng, Xianzhi, Pu, Yunqiao, Wuddineh, Wegi A, Zhang, Ji-Yi, Turner, Geoffrey B, Sykes, Robert W, Davis, Mark F, Udvardi, Michael K, Wang, Zeng-Yu, Mohnen, Debra, Ragauskas, Arthur J, Labbé, Nicole and Stewart, C Neal (2018). Functional analysis of cellulose synthase CesA4 and CesA6 genes in switchgrass (Panicum virgatum) by overexpression and RNAi-mediated gene silencing. Frontiers in Plant Science, 9 1114. doi: 10.3389/fpls.2018.01114 |
