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2024 Journal Article A novel tape-free sample preparation method for human osteochondral cryosections for high throughput hyperspectral imagingFan, Xiwei, Donose, Bogdan, Jones, Michael W M, Howard, Daryl, Torniainen, Jari, Bertling, Karl, Guo, Xiao, Kewish, Cameron M, Lee, Kah Meng, Sun, Antonia Rujia, Rakic, Aleksandar, Crawford, Ross, Afara, Isaac O. and Prasadam, Indira (2024). A novel tape-free sample preparation method for human osteochondral cryosections for high throughput hyperspectral imaging. Histochemistry and Cell Biology, 163 (1) 16. doi: 10.1007/s00418-024-02338-1 |
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2024 Journal Article The human patellar tendon is mechanically homogenous at its mid-substanceKositsky, Adam, Stenroth, Lauri, Nippolainen, Ervin, Torniainen, Jari, Mäkelä, Janne T.A., Paakkari, Petri, Paakkonen, Tommi, Kröger, Heikki, Töyräs, Juha, Afara, Isaac O. and Korhonen, Rami K. (2024). The human patellar tendon is mechanically homogenous at its mid-substance. Journal of the Mechanical Behavior of Biomedical Materials, 163 106875, 106875. doi: 10.1016/j.jmbbm.2024.106875 |
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2024 Journal Article Detecting genetic variation in plants by mapping cell water dynamics with terahertz laser feedback interferometryKundu, Urbi, Torniainen, Jari, Bertling, Karl, Kashyap, Mayuri, Donose, Bogdan C., Gillespie, Tim, Indjin, Dragan, Li, Lianhe, Linfield, Edmund H., Davies, A. Giles, Dean, Paul, Bandyopadhyay, Aparajita, Sengupta, Amartya and Rakić, Aleksandar D. (2024). Detecting genetic variation in plants by mapping cell water dynamics with terahertz laser feedback interferometry. IEEE Transactions on Terahertz Science and Technology, 14 (5), 665-674. doi: 10.1109/tthz.2024.3412826 |
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2024 Journal Article Terahertz in vivo imaging of human skin: toward detection of abnormal skin pathologiesQi, X., Bertling, K., Torniainen, J., Kong, F., Gillespie, T., Primiero, C., Stark, M. S., Dean, P., Indjin, D., Li, L. H., Linfield, E. H., Davies, A. G., Brünig, M., Mills, T., Rosendahl, C., Soyer, H. P. and Rakić, A. D. (2024). Terahertz in vivo imaging of human skin: toward detection of abnormal skin pathologies. APL Bioengineering, 8 (1) 016117, 016117. doi: 10.1063/5.0190573 |
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2023 Journal Article Refractive index of human articular cartilage varies with tissue structure and compositionKhan, Bilour, Nippolainen, Ervin, Shahini, Fatemeh, Torniainen, Jari, Mikkonen, Santtu, Nonappa, Popov, Alexey, Töyräs, Juha and Afara, Isaac (2023). Refractive index of human articular cartilage varies with tissue structure and composition. Journal of the Optical Society of America A, 40 (12), 2205-2214. doi: 10.1364/josaa.498722 |
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2023 Journal Article Coherent Terahertz laser feedback interferometry for hydration sensing in leavesKashyap, Mayuri, Torniainen, Jari, Bertling, Karl, Kundu, Urbi, Singh, Khushboo, Donose, Bogdan, Gillespie, Tim, Lim, Yah Leng, Indjin, Dragan, Li, Lian He, Linfield, Edmund, Davies, Giles, Dean, Paul, Smith, Millicent, Chapman, Scott, Bandyopadhyay, Aparajita, Sengupta, Amartya and Rakic, Aleksandar (2023). Coherent Terahertz laser feedback interferometry for hydration sensing in leaves. Optics Express, 31 (15), 23877-23888. doi: 10.1364/oe.490217 |
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2023 Journal Article Nondestructive evaluation of mechanical and histological properties of the human aorta with near-infrared spectroscopySarin, Jaakko K., Kiema, Miika, Luoto, Emma-Sofia, Husso, Annastiina, Hedman, Marja, Laakkonen, Johanna P. and Torniainen, Jari (2023). Nondestructive evaluation of mechanical and histological properties of the human aorta with near-infrared spectroscopy. Journal of Surgical Research, 287, 82-89. doi: 10.1016/j.jss.2023.01.016 |
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2023 Journal Article Terahertz imaging of human skin pathologies using laser feedback interferometry with quantum cascade lasersQi, Xiaoqiong, Bertling, Karl, Stark, Mitchell S., Taimre, Thomas, Kao, Yung-Ching, Lim, Yah Leng, Han, She, O'Brien, Blake, Collins, Angus, Walsh, Michael, Torniainen, Jari, Gillespie, Timothy, Donose, Bogdan C., Dean, Paul, Li, Lian He, Linfield, Edmund H., Davies, A. Giles, Indjin, Dragan, Soyer, H. Peter and Rakic, Aleksandar D. (2023). Terahertz imaging of human skin pathologies using laser feedback interferometry with quantum cascade lasers. Biomedical Optics Express, 14 (4) 480615, 1393-1410. doi: 10.1364/boe.480615 |
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2022 Journal Article Assessment of Ligament Viscoelastic Properties Using Raman SpectroscopyCui, Andy, Nippolainen, Ervin, Shaikh, Rubina, Torniainen, Jari, Ristaniemi, Aapo, Finnilä, Mikko, Korhonen, Rami K., Saarakkala, Simo, Herzog, Walter, Töyräs, Juha and Afara, Isaac O. (2022). Assessment of Ligament Viscoelastic Properties Using Raman Spectroscopy. Annals of Biomedical Engineering, 50 (9), 1134-1142. doi: 10.1007/s10439-022-02988-z |
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2022 Journal Article Wall shear stress predicts media degeneration and biomechanical changes in thoracic aortaKiema, Miika, Sarin, Jaakko K., Kauhanen, S. Petteri, Torniainen, Jari, Matikka, Hanna, Luoto, Emma-Sofia, Jaakkola, Pekka, Saari, Petri, Liimatainen, Timo, Vanninen, Ritva, Ylä-Herttuala, Seppo, Hedman, Marja and Laakkonen, Johanna P. (2022). Wall shear stress predicts media degeneration and biomechanical changes in thoracic aorta. Frontiers in Physiology, 13 934941. doi: 10.3389/fphys.2022.934941 |
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2022 Journal Article Near infrared spectroscopic evaluation of biochemical and crimp properties of knee joint ligaments and patellar tendonTorniainen, Jari, Ristaniemi, Aapo, Sarin, Jaakko K., Prakash, Mithilesh, Afara, Isaac O., Finnilä, Mikko A.J., Stenroth, Lauri, Korhonen, Rami K. and Töyräs, Juha (2022). Near infrared spectroscopic evaluation of biochemical and crimp properties of knee joint ligaments and patellar tendon. PLoS ONE, 17 (2) e0263280, e0263280. doi: 10.1371/journal.pone.0263280 |
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2022 Journal Article Near-Infrared Spectroscopy Enables Arthroscopic Histologic Grading of Human Knee Articular CartilageSarin, Jaakko K., Prakash, Mithilesh, Shaikh, Rubina, Torniainen, Jari, Joukainen, Antti, Kröger, Heikki, Afara, Isaac O. and Töyräs, Juha (2022). Near-Infrared Spectroscopy Enables Arthroscopic Histologic Grading of Human Knee Articular Cartilage. Arthroscopy, Sports Medicine, and Rehabilitation, 4 (5), e1767-e1775. doi: 10.1016/j.asmr.2022.07.002 |
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2021 Journal Article Biomechanical, biochemical, and near infrared spectral data of bovine knee ligaments and patellar tendonRistaniemi, Aapo, Torniainen, Jari, Paakkonen, Tommi, Stenroth, Lauri, Finnilä, Mikko A. J., Tanska, Petri, Töyräs, Juha and Korhonen, Rami K. (2021). Biomechanical, biochemical, and near infrared spectral data of bovine knee ligaments and patellar tendon. Data in brief, 36 106976, 106976. doi: 10.1016/j.dib.2021.106976 |
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2021 Journal Article Raman spectroscopy is sensitive to biochemical changes related to various cartilage injuriesShaikh, Rubina, Nippolainen, Ervin, Virtanen, Vesa, Torniainen, Jari, Rieppo, Lassi, Saarakkala, Simo, Afara, Isaac O. and Töyräs, Juha (2021). Raman spectroscopy is sensitive to biochemical changes related to various cartilage injuries. Journal of Raman Spectroscopy, 52 (4) jrs.6062, 796-804. doi: 10.1002/jrs.6062 |
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2021 Journal Article Characterization of connective tissues using near-infrared spectroscopy and imagingAfara, Isaac O., Shaikh, Rubina, Nippolainen, Ervin, Querido, William, Torniainen, Jari, Sarin, Jaakko K., Kandel, Shital, Pleshko, Nancy and Töyräs, Juha (2021). Characterization of connective tissues using near-infrared spectroscopy and imaging. Nature Protocols, 16 (2), 1297-1329. doi: 10.1038/s41596-020-00468-z |
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2021 Journal Article Structure, composition and fibril-reinforced poroviscoelastic properties of bovine knee ligaments and patellar tendonRistaniemi, Aapo, Regmi, Dristi, Mondal, Diponkor, Torniainen, Jari, Tanska, Petri, Stenroth, Lauri, Finnilä, Mikko A. J., Töyräs, Juha and Korhonen, Rami K. (2021). Structure, composition and fibril-reinforced poroviscoelastic properties of bovine knee ligaments and patellar tendon. Journal of the Royal Society. Interface, 18 (174) 20200737, 1-11. doi: 10.1098/rsif.2020.0737 |
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2020 Journal Article Machine learning augmented near-infrared spectroscopy: in vivo follow-up of cartilage defectsSarin, J. K., Te Moller, N. C. R., Mohammadi, A., Prakash, M., Torniainen, J., Brommer, H., Nippolainen, E., Shaikh, R., Mäkelä, J. T. A., Korhonen, R. K., van Weeren, P. R., Afara, I. O. and Töyräs, J. (2020). Machine learning augmented near-infrared spectroscopy: in vivo follow-up of cartilage defects. Osteoarthritis and Cartilage, 29 (3), 423-432. doi: 10.1016/j.joca.2020.12.007 |
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2020 Journal Article Open-source python module for automated preprocessing of near infrared spectroscopic dataTorniainen, Jari, Afara, Isaac O., Prakash, Mithilesh, Sarin, Jaakko K., Stenroth, Lauri and Töyräs, Juha (2020). Open-source python module for automated preprocessing of near infrared spectroscopic data. Analytica Chimica Acta, 1108, 1-9. doi: 10.1016/j.aca.2020.02.030 |
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2020 Journal Article Comparison of water, hydroxyproline, uronic acid and elastin contents of bovine knee ligaments and patellar tendon and their relationships with biomechanical propertiesRistaniemi, A., Torniainen, J., Stenroth, L., Finnilä, M. A.J., Paakkonen, T., Töyräs, J. and Korhonen, R. K. (2020). Comparison of water, hydroxyproline, uronic acid and elastin contents of bovine knee ligaments and patellar tendon and their relationships with biomechanical properties. Journal of the Mechanical Behavior of Biomedical Materials, 104 103639, 103639. doi: 10.1016/j.jmbbm.2020.103639 |
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2019 Journal Article Dataset on equine cartilage near infrared spectra, composition, and functional propertiesSarin, Jaakko K., Torniainen, Jari, Prakash, Mithilesh, Rieppo, Lassi, Afara, Isaac O. and Toyras, Juha (2019). Dataset on equine cartilage near infrared spectra, composition, and functional properties. Scientific Data, 6 (1) 164, 164. doi: 10.1038/s41597-019-0170y |
