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2022 Journal Article Distal regulation, silencers, and a shared combinatorial syntax are hallmarks of animal embryogenesisCornejo-Paramo, Paola, Roper, Kathrein, Degnan, Sandie, Degnan, Bernard and Wong, Emily S (2022). Distal regulation, silencers, and a shared combinatorial syntax are hallmarks of animal embryogenesis. Genome Research, 32 (3), 474-487. doi: 10.1101/gr.275864.121 |
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2021 Journal Article Pearl sac gene expression profiles associated with pearl attributes in the silver-lip pearl oyster, Pinctada maximaMcDougall, Carmel, Aguilera, Felipe, Shokoohmand, Ali, Moase, Patrick and Degnan, Bernard M. (2021). Pearl sac gene expression profiles associated with pearl attributes in the silver-lip pearl oyster, Pinctada maxima. Frontiers in Genetics, 11 597459, 1-13. doi: 10.3389/fgene.2020.597459 |
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2021 Journal Article The iron-responsive genome of the chiton Acanthopleura granulataVarney, Rebecca M., Speiser, Daniel I., McDougall, Carmel, Degnan, Bernard M. and Kocot, Kevin M. (2021). The iron-responsive genome of the chiton Acanthopleura granulata. Genome Biology and Evolution, 13 (1) evaa263, 1-15. doi: 10.1093/gbe/evaa263 |
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2019 Journal Article Co-expression of synaptic genes in the sponge Amphimedon queenslandica uncovers ancient neural submodulesWong, Eunice, Mölter, Jan, Anggono, Victor, Degnan, Sandie M. and Degnan, Bernard M. (2019). Co-expression of synaptic genes in the sponge Amphimedon queenslandica uncovers ancient neural submodules. Scientific Reports, 9 (1) 15781, 15781. doi: 10.1038/s41598-019-51282-x |
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2019 Journal Article Author correction: The mid-developmental transition and the evolution of animal body plans (Nature, (2016), 531, 7596, (637-641), 10.1038/nature16994)Levin, Michal, Anavy, Leon, Cole, Alison G., Winter, Eitan, Mostov, Natalia, Khair, Sally, Senderovich, Naftalie, Kovalev, Ekaterina, Silver, David H., Feder, Martin, Fernandez-Valverde, Selene L., Nakanishi, Nagayasu, Simmons, David, Simakov, Oleg, Larsson, Tomas, Liu, Shang-Yun, Jerafi-Vider, Ayelet, Yaniv, Karina, Ryan, Joseph F., Martindale, Mark Q., Rink, Jochen C., Arendt, Detlev, Degnan, Sandie M., Degnan, Bernard M., Hashimshony, Tamar and Yanai, Itai (2019). Author correction: The mid-developmental transition and the evolution of animal body plans (Nature, (2016), 531, 7596, (637-641), 10.1038/nature16994). Nature, 575 (7782), E3-E3. doi: 10.1038/s41586-019-1698-x |
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2019 Journal Article The first identification of complete Eph-ephrin signalling in ctenophores and sponges reveals a role for neofunctionalization in the emergence of signalling domainsKrishnan, Arunkumar, Degnan, Bernard M. and Degnan, Sandie M. (2019). The first identification of complete Eph-ephrin signalling in ctenophores and sponges reveals a role for neofunctionalization in the emergence of signalling domains. BMC Evolutionary Biology, 19 (1) 96, 96. doi: 10.1186/s12862-019-1418-z |
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2018 Journal Article The evolution of ependymin-related proteinsMcDougall, Carmel, Hammond, Michael J., Dailey, Simon C., Somorjai, Ildiko M. L., Cummins, Scott F. and Degnan, Bernard M. (2018). The evolution of ependymin-related proteins. BMC Evolutionary Biology, 18 (1) 182, 182. doi: 10.1186/s12862-018-1306-y |
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2018 Journal Article Diverse RNA interference strategies in early-branching metazoansCalcino, Andrew D., Fernandez-Valverde, Selene L., Taft, Ryan J. and Degnan, Bernard M. (2018). Diverse RNA interference strategies in early-branching metazoans. BMC Evolutionary Biology, 18 (1) 160, 160. doi: 10.1186/s12862-018-1274-2 |
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2018 Journal Article The evolution of mollusc shellsMcDougall, Carmel and Degnan, Bernard M. (2018). The evolution of mollusc shells. Wiley Interdisciplinary Reviews: Developmental Biology, 7 (3) e313, e313. doi: 10.1002/wdev.313 |
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2018 Journal Article Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularityGaiti, Federico, Degnan, Bernard M and Tanurdžić, Miloš (2018). Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularity. RNA Biology, 15 (6), 1-22. doi: 10.1080/15476286.2018.1460166 |
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2018 Journal Article Sponge Long Non-Coding RNAs Are Expressed in Specific Cell Types and Conserved NetworksGaiti, Federico, Hatleberg, William L., Tanurdžić, Miloš and Degnan, Bernard M. (2018). Sponge Long Non-Coding RNAs Are Expressed in Specific Cell Types and Conserved Networks. Non-Coding RNA, 4 (1) 6, 6. doi: 10.3390/ncrna4010006 |
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2017 Journal Article Variation in orthologous shell-forming proteins contribute to molluscan shell diversityJackson, Daniel J., Reim, Laurin, Randow, Clemens, Cerveau, Nicolas, Degnan, Bernard M. and Fleck, Claudia (2017). Variation in orthologous shell-forming proteins contribute to molluscan shell diversity. Molecular Biology and Evolution, 34 (11), 2959-2969. doi: 10.1093/molbev/msx232 |
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2017 Journal Article Origin of the animal circadian clock: diurnal and light-entrained gene expression in the sponge Amphimedon queenslandicaJindrich, Katia, Roper, Kathrein E., Lemon, Sussan, Degnan, Bernard M., Reitzel, Adam M. and Degnan, Sandie M. (2017). Origin of the animal circadian clock: diurnal and light-entrained gene expression in the sponge Amphimedon queenslandica. Frontiers in Marine Science, 4 (OCT) 327. doi: 10.3389/fmars.2017.00327 |
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2017 Journal Article Lipidomics of the sea sponge Amphimedon queenslandica and implication for biomarker geochemistryGold, D. A., O'Reilly, S. S., Watson, J., Degnan, B. M., Degnan, S. M., Krömer, J. O. and Summons, R. E. (2017). Lipidomics of the sea sponge Amphimedon queenslandica and implication for biomarker geochemistry. Geobiology, 15 (6), 836-843. doi: 10.1111/gbi.12253 |
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2017 Journal Article Origin and evolution of the metazoan non-coding regulatory genomeGaiti, Federico, Calcino, Andrew D., Tanurdzic, Miloš and Degnan, Bernard M. (2017). Origin and evolution of the metazoan non-coding regulatory genome. Developmental Biology, 427 (2), 193-202. doi: 10.1016/j.ydbio.2016.11.013 |
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2017 Journal Article Seasonal changes in environmental nutrient availability and biomass composition in a coral reef spongeWatson, Jabin R., Kroemer, Jens O., Degnan, Bernard M. and Degnan, Sandie M. (2017). Seasonal changes in environmental nutrient availability and biomass composition in a coral reef sponge. Marine Biology, 164 (6) 135. doi: 10.1007/s00227-017-3167-0 |
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2017 Journal Article Transcriptomic profiling of the allorecognition response to grafting in the demosponge Amphimedon queenslandicaGrice, Laura F. and Degnan, Bernard M. (2017). Transcriptomic profiling of the allorecognition response to grafting in the demosponge Amphimedon queenslandica. Marine Drugs, 15 (5) 136, 136. doi: 10.3390/md15050136 |
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2017 Journal Article Origin and evolution of the sponge aggregation factor gene familyGrice, Laura F., Gauthier, Marie E. A., Roper, Kathrein E., Fernàndez-Busquets, Xavier, Degnan, Sandie M. and Degnan, Bernard M. (2017). Origin and evolution of the sponge aggregation factor gene family. Molecular Biology and Evolution, 34 (5), 1083-1099. doi: 10.1093/molbev/msx058 |
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2016 Journal Article The importance of evo-devo to an integrated understanding of molluscan biomineralisationJackson, Daniel J. and Degnan, Bernard M. (2016). The importance of evo-devo to an integrated understanding of molluscan biomineralisation. Journal of Structural Biology, 196 (2), 67-74. doi: 10.1016/j.jsb.2016.01.005 |
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2016 Journal Article Comparative morphological analysis of the immature stages of the grass blue butterflies Zizeeria and Zizina (Lepidoptera: Lycaenidae)Gurung, Raj D., Iwata, Masaki, Hiyama, Atsuki, Taira, Wataru, Degnan, Bernard, Degnan, Sandie and Otaki, Joji M. (2016). Comparative morphological analysis of the immature stages of the grass blue butterflies Zizeeria and Zizina (Lepidoptera: Lycaenidae). Zoological Science, 33 (4), 384-400. doi: 10.2108/zs150171 |
