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2020 Journal Article Deep conservation of the enhancer regulatory code in animalsWong, Emily S., Zheng, Dawei, Tan, Siew Z., Bower, Neil L., Garside, Victoria, Vanwalleghem, Gilles, Gaiti, Federico, Scott, Ethan, Hogan, Benjamin M., Kikuchi, Kazu, McGlinn, Edwina, Francois, Mathias and Degnan, Bernard M. (2020). Deep conservation of the enhancer regulatory code in animals. Science, 370 (6517) 681, 1-9. doi: 10.1126/science.aax8137 |
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2019 Journal Article Convergent evolution of a vertebrate-like methylome in a marine spongede Mendoza, Alex, Hatleberg, William L., Pang, Kevin, Leininger, Sven, Bogdanovic, Ozren, Pflueger, Jahnvi, Buckberry, Sam, Technau, Ulrich, Hejnol, Andreas, Adamska, Maja, Degnan, Bernard M., Degnan, Sandie M. and Lister, Ryan (2019). Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature Ecology & Evolution, 3 (10), 1464-1473. doi: 10.1038/s41559-019-0983-2 |
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2019 Journal Article Pluripotency and the origin of animal multicellularitySogabe, Shunsuke, Hatleberg, William L., Kocot, Kevin M., Say, Tahsha E., Stoupin, Daniel, Roper, Kathrein E., Fernandez-Valverde, Selene L., Degnan, Sandie M. and Degnan, Bernard M. (2019). Pluripotency and the origin of animal multicellularity. Nature, 570 (7762), 519-522. doi: 10.1038/s41586-019-1290-4 |
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2018 Journal Article Early metazoan cell type diversity and the evolution of multicellular gene regulationSebé-Pedrós, Arnau, Chomsky, Elad, Pang, Kevin, Lara-Astiaso, David, Gaiti, Federico, Mukamel, Zohar, Amit, Ido, Hejnol, Andreas, Degnan, Bernard M. and Tanay, Amos (2018). Early metazoan cell type diversity and the evolution of multicellular gene regulation. Nature Ecology & Evolution, 2 (7), 1176-1188. doi: 10.1038/s41559-018-0575-6 |
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2017 Journal Article The origin of Metazoa: a unicellular perspectiveSebe-Pedros, Arnau, Degnan, Bernard M. and Ruiz-Trillo, Inaki (2017). The origin of Metazoa: a unicellular perspective. Nature Reviews Genetics, 18 (8), 498-512. doi: 10.1038/nrg.2017.21 |
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2017 Journal Article Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexityGaiti, Federico, Jindrich, Katia, Fernandez-Valverde, Selene L., Roper, Kathrein E., Degnan, Bernard M. and Tanurdzic, Milos (2017). Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity. Elife, 6 e22194. doi: 10.7554/eLife.22194 |
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2017 Journal Article Co-option and de novo gene evolution underlie molluscan shell diversityAguilera, Felipe, McDougall, Carmel and Degnan, Bernard M. (2017). Co-option and de novo gene evolution underlie molluscan shell diversity. Molecular Biology and Evolution, 34 (4), 779-792. doi: 10.1093/molbev/msw294 |
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2017 Journal Article The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pestHall, Michael R., Kocot, Kevin M., Baughman, Kenneth W., Fernandez-Valverde, Selene L., Gauthier, Marie E. A., Hatleberg, William L. ., Krishnan, Arunkumar, McDougall, Carmel, Motti, Cherie A., Shoguchi, Eiichi, Wang, Tianfang, Xiang, Xueyan, Zhao, Min, Bose, Utpal, Shinzato, Chuya, Hisata, Kanako, Fujie, Manabu, Kanda, Miyuki, Cummins, Scott F., Satoh, Noriyuki, Degnan, Sandie M. and Degnan, Bernard M. (2017). The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest. Nature, 544 (7649), 231-234. doi: 10.1038/nature22033 |
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2016 Journal Article An ancient role for nitric oxide in regulating the animal pelagobenthic life cycle: evidence from a marine spongeUeda, Nobuo, Richards, Gemma S., Degnan, Bernard M., Kranz, Alexandrea, Adamska, Maja, Croll, Roger P. and Degnan, Sandie M. (2016). An ancient role for nitric oxide in regulating the animal pelagobenthic life cycle: evidence from a marine sponge. Scientific Reports, 6 (37546) 37546, 37546. doi: 10.1038/srep37546 |
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2016 Journal Article The mid-developmental transition and the evolution of animal body plansLevin, Michal, Anavy, Leon, Cole, Alison G., Winter, Eitan, Mostov, Natalia, Khair, Sally, Senderovich, Naftalie, Kovalev, Ekaterina, Silver, David H., Feder, Martin, Fernandez-Valverde, Selene L., Nakanishi, Nagayasu, Simmons, David, Simakov, Oleg, Larsson, Tomas, Liu, Shang-Yun, Jerafi-Vider, Ayelet, Yaniv, Karina, Ryan, Joseph F., Martindale, Mark Q., Rink, Jochen C., Arendt, Detlev, Degnan, Sandie M., Degnan, Bernard M., Hashimshony, Tamar and Yanai, Itai (2016). The mid-developmental transition and the evolution of animal body plans. Nature, 531 (7596), 637-641. doi: 10.1038/nature16994 |
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2024 Journal Article Seasonal tissue-specific gene expression in wild crown-of-thorns starfish reveals reproductive and stress-related transcriptional systemsMorin, Marie, Jönsson, Mathias, Wang, Conan K., Craik, David J., Degnan, Sandie M. and Degnan, Bernard M. (2024). Seasonal tissue-specific gene expression in wild crown-of-thorns starfish reveals reproductive and stress-related transcriptional systems. PLOS Biology, 22 (5) e3002620, e3002620. doi: 10.1371/journal.pbio.3002620 |
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2024 Journal Article Developmental gene expression in the eyes of the pygmy squid Xipholeptos notoidesKoller, David, Kocot, Kevin M., Degnan, Bernard M. and Wollesen, Tim (2024). Developmental gene expression in the eyes of the pygmy squid Xipholeptos notoides. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 342 (7), 483-498. doi: 10.1002/jez.b.23270 |
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2023 Journal Article Potential for host-symbiont communication via neurotransmitters and neuromodulators in an aneural animal, the marine sponge Amphimedon queenslandicaXiang, Xueyan, Vilar Gomez, Arturo A., Blomberg, Simone P., Yuan, Huifang, Degnan, Bernard M. and Degnan, Sandie M. (2023). Potential for host-symbiont communication via neurotransmitters and neuromodulators in an aneural animal, the marine sponge Amphimedon queenslandica. Frontiers in Neural Circuits, 17 ARTN 1250694, 1-12. doi: 10.3389/fncir.2023.1250694 |
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2023 Journal Article Captivity induces a sweeping and sustained genomic response in a starfishMorin, Marie, Jönsson, Mathias, Wang, Conan K., Craik, David J., Degnan, Sandie M. and Degnan, Bernard M. (2023). Captivity induces a sweeping and sustained genomic response in a starfish. Molecular Ecology, 32 (13), 3541-3556. doi: 10.1111/mec.16947 |
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2023 Journal Article HIV promotes atherosclerosis via circulating extracellular vesicle microRNAsDa Fonseca Ferreira, Andrea, Wei, Jianqin, Zhang, Lukun, Macon, Conrad J., Degnan, Bernard, Jayaweera, Dushyantha, Hare, Joshua M., Kolber, Michael A., Bellio, Michael, Khan, Aisha, Pan, Yue, Dykxhoorn, Derek M., Wang, Liyong and Dong, Chunming (2023). HIV promotes atherosclerosis via circulating extracellular vesicle microRNAs. International Journal of Molecular Sciences, 24 (8) 7567, 1-24. doi: 10.3390/ijms24087567 |
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2023 Journal Article How larvae and life cycles evolveDegnan, Bernard M. and Degnan, Sandie M. (2023). How larvae and life cycles evolve. Trends in Genetics, 39 (7), 528-530. doi: 10.1016/j.tig.2023.03.008 |
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2022 Journal Article Sex-specific expression of pheromones and other signals in gravid starfishJönsson, Mathias, Morin, Marie, Wang, Conan K., Craik, David J., Degnan, Sandie M. and Degnan, Bernard M. (2022). Sex-specific expression of pheromones and other signals in gravid starfish. BMC Biology, 20 (1) 288, 1-18. doi: 10.1186/s12915-022-01491-0 |
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2022 Journal Article Gene activation of metazoan Fox transcription factors at the onset of metamorphosis in the marine demosponge Amphimedon queenslandicaYuan, Huifang, Hatleberg, William L., Degnan, Bernard M. and Degnan, Sandie M. (2022). Gene activation of metazoan Fox transcription factors at the onset of metamorphosis in the marine demosponge Amphimedon queenslandica. Development, Growth and Differentiation, 64 (8), 455-468. doi: 10.1111/dgd.12812 |
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2022 Journal Article Ribosomal RNA-depletion provides an efficient method for successful dual RNA-Seq expression profiling of a marine sponge holobiontXiang, Xueyan, Poli, Davide, Degnan, Bernard M. and Degnan, Sandie M. (2022). Ribosomal RNA-depletion provides an efficient method for successful dual RNA-Seq expression profiling of a marine sponge holobiont. Marine Biotechnology, 24 (4), 722-732. doi: 10.1007/s10126-022-10138-8 |
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2022 Journal Article Phototransduction in a marine sponge provides insights into the origin of animal visionWong, Eunice, Anggono, Victor, Williams, Stephen R., Degnan, Sandie M. and Degnan, Bernard M. (2022). Phototransduction in a marine sponge provides insights into the origin of animal vision. iScience, 25 (6) 104436, 104436. doi: 10.1016/j.isci.2022.104436 |
