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2011 Journal Article Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabiesPope, P. B., Smith, W., Denman, S. E., Tringe, S. G., Barry, K., Hugenholtz, P., McSweeney, C. S., McHardy, A. C. and Morrison, M. (2011). Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies. Science, 333 (6042), 646-648. doi: 10.1126/science.1205760 |
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2011 Journal Article Exploring rumen methanogen genomes to identify targets for methane mitigation strategiesAttwood, G. T., Altermann, E., Kelly, W. J., Leahy, S. C., Zhang, L. and Morrison, M. (2011). Exploring rumen methanogen genomes to identify targets for methane mitigation strategies. Animal Feed Science and Technology, 166-167, 65-75. doi: 10.1016/j.anifeedsci.2011.04.004 |
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2011 Journal Article Overestimation of the abundance of sulfate-reducing bacteria in human feces by quantitative PCR targeting the Desulfovibrio 16S rRNA geneChristophersen, C. T., Morrison, M. and Conlon, M. A. (2011). Overestimation of the abundance of sulfate-reducing bacteria in human feces by quantitative PCR targeting the Desulfovibrio 16S rRNA gene. Applied and Environmental Microbiology, 77 (10), 3544-3546. doi: 10.1128/AEM.02851-10 |
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2011 Journal Article Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colonde Carcer, Daniel Aguirre, Ó Cuív, Páraic, Wang, Tingting, Kang, Seungha, Worthley, Daniel, Whitehall, Vicki, Gordon, Iain, McSweeney, Chris, Leggett, Barbara and Morrison, Mark (2011). Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon. ISME Journal, 5 (5), 801-809. doi: 10.1038/ismej.2010.177 |
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2011 Journal Article Taxonomic metagenome sequence assignment with structured output modelsPatil, Kaustubh R., Haider, Peter, Pope, Phillip B., Turnbaugh, Peter J., Morrison, Mark, Scheffer, Tobias and McHardy, Alice C. (2011). Taxonomic metagenome sequence assignment with structured output models. Nature Methods, 8 (3), 191-192. doi: 10.1038/nmeth0311-191 |
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2011 Journal Article The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissueÓ Cuív, Páraic, de Carcer, Daniel Aguirre, Jones, Michelle, Klaassens, Eline S., Worthley, Daniel L., Whitehall, Vicki L. J., Kang, Seungha, McSweeney, Christopher S., Leggett, Barbara A. and Morrison, Mark (2011). The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue. Microbial Ecology, 61 (2), 353-362. doi: 10.1007/s00248-010-9771-x |
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2011 Journal Article Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formationPope, Phillip B., Totsika, Makrina, de Carcer, Daniel Aguirre, Schembri, Mark A. and Morrison, Mark (2011). Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formation. ISME Journal, 5 (2), 341-350. doi: 10.1038/ismej.2010.116 |
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2011 Journal Article High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gutRosewarne, Carly P., Pope, Phillip B., Denman, Stuart E., McSweeney, Christopher S., O'Cuiv, Paraic and Morrison, Mark (2011). High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gut. Microbial Ecology, 61 (2), 448-454. doi: 10.1007/s00248-010-9745-z |
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2011 Journal Article Phylogenetic diversity of bacterial communities in bovine rumen as affected by diets and microenvironmentsKim, Minseok, Morrison, Mark and Yu, Zhongtang (2011). Phylogenetic diversity of bacterial communities in bovine rumen as affected by diets and microenvironments. Folia Microbiologica, 56 (5), 453-458. doi: 10.1007/s12223-011-0066-5 |
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2011 Journal Article Highlighting new phylogenetic specificities of Crohn's disease microbiotaMondot, S., Kang, S., Furet, J.P., Aguirre De Carcer, D., McSweeney, C., Morrison, M., Marteau, P., Dore, J. and Leclerc, M. (2011). Highlighting new phylogenetic specificities of Crohn's disease microbiota. Inflammatory Bowel Diseases, 17 (1), 185-192. doi: 10.1002/ibd.21436 |
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2011 Journal Article Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrateKabel, Mirjam A., Yeoman, Carl J., Han, Yejun, Dodd, Dylan, Abbas, Charles A., de Bont, Jan A. M., Morrison, Mark, Cann, Isaac K. O. and Mackie, Roderick I. (2011). Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrate. Applied and Environmental Microbiology, 77 (16), 5671-5681. doi: 10.1128/AEM.05321-11 |
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2011 Journal Article Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomesde Carcer, Daniel Aguirre, Denman, Stuart E., McSweeney, Chris and Morrison, Mark (2011). Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes. Applied and Environmental Microbiology, 77 (24), 8795-8798. doi: 10.1128/AEM.05491-11 |
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2011 Journal Article Status of the phylogenetic diversity census of ruminal microbiomesKim, Minseok, Morrison, Mark and Yu, Zhongtang (2011). Status of the phylogenetic diversity census of ruminal microbiomes. FEMS Microbiology Ecology, 76 (1), 49-63. doi: 10.1111/j.1574-6941.2010.01029.x |
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2011 Journal Article Draft genome sequence of Turicibacter sanguinis PC909, isolated from human fecesO Cuív, Paraic, Klaassens, Eleine S., Durkin, A. Scott, Harkins, Derek M., Foster, Les, McCorrison, Jamison, Torralba, Manolito, Nelson, Karen E. and Morrison, Mark (2011). Draft genome sequence of Turicibacter sanguinis PC909, isolated from human feces. Journal of Bacteriology, 193 (5), 1288-1289. doi: 10.1128/JB.01328-10 |
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2011 Journal Article Draft genome sequence of Bacteroides vulgatus PC510, a strain isolated from human fecesÓ Cuív, Páraic, Klaassens, Eline S., Durkin, A. Scott, Harkins, Derek M., Foster, Les, McCorrison, Jamison, Torralba, Manolito, Nelson, Karen E. and Morrison, Mark (2011). Draft genome sequence of Bacteroides vulgatus PC510, a strain isolated from human feces. Journal of Bacteriology, 193 (15), 4025-4026. doi: 10.1128/JB.05256-11 |
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2011 Journal Article A meta-analysis of the microbial diversity observed in anaerobic digestersNelson, Michael C., Morrison, Mark and Yu, Zhongtang (2011). A meta-analysis of the microbial diversity observed in anaerobic digesters. Bioresource Technology, 102 (4), 3730-3739. doi: 10.1016/j.biortech.2010.11.119 |
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2011 Journal Article Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomesKim, Minseok, Morrison, Mark and Yu, Zhongtang (2011). Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes. Journal of Microbiological Methods, 84 (1), 81-87. doi: 10.1016/j.mimet.2010.10.020 |
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2010 Journal Article Functional gene analysis suggests different acetogen populations in the Bovine Rumen and Tammar Wallaby ForestomachGagen, Emma J., Denman, Stuart E., Padmanabha, Jagadish, Zadbuke, Someshwar, Al Jassim, Rafat, Morrison, Mark and McSweeney, Christopher S. (2010). Functional gene analysis suggests different acetogen populations in the Bovine Rumen and Tammar Wallaby Forestomach. Applied and Environmental Microbiology, 76 (23), 7785-7795. doi: 10.1128/AEM.01679-10 |
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2010 Journal Article Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivoresPope, P. B., Denman, S. E., Jones, M., Tringe, S. G., Barry, K., Malfatti, S. A., McHardy, A. C., Cheng, J. F., Hugenholtz, P., McSweeney, C. S. and Morrison, M. (2010). Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proceedings of the National Academy of Sciences of the United States of America, 107 (33), 14793-1-14798-6. doi: 10.1073/pnas.1005297107 |
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2010 Journal Article Occurrence and Persistence of Erythromycin Resistance Genes (erm) and Tetracycline Resistance Genes (tet) in Waste Treatment Systems on Swine FarmsChen, Jing, Michel Jr., Frederick C., Sreevatsan, Srinand, Morrison, Mark and Yu, Zhongtang (2010). Occurrence and Persistence of Erythromycin Resistance Genes (erm) and Tetracycline Resistance Genes (tet) in Waste Treatment Systems on Swine Farms. Microbial Ecology, 60 (3), 479-486. doi: 10.1007/s00248-010-9634-5 |
