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2025 Journal Article Small intestinal bacterial overgrowth in chronic liver disease: an updated systematic review and meta-analysis of case-control studiesShah, Ayesha, Spannenburg, Liam, Thite, Parag, Morrison, Mark, Fairlie, Thomas, Koloski, Natasha, Kashyap, Purna C., Pimentel, Mark, Rezaie, Ali, Gores, Gregory J., Jones, Michael P. and Holtmann, Gerald (2025). Small intestinal bacterial overgrowth in chronic liver disease: an updated systematic review and meta-analysis of case-control studies. eClinicalMedicine, 80 103024, 103024-80. doi: 10.1016/j.eclinm.2024.103024 |
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2024 Journal Article Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray KangarooVolmer, James G., Evans, Paul N., Soo, Rochelle M., Hugenholtz, Philip, Tyson, Gene W. and Morrison, Mark (2024). Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo. Frontiers in Microbiology, 15 1483533, 1-11. doi: 10.3389/fmicb.2024.1483533 |
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2024 Journal Article Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approachXu, Zhilu, Yeoh, Yun Kit, Tun, Hein M., Fei, Na, Zhang, Jingwan, Morrison, Mark, Kamm, Michael A., Yu, Jun, Chan, Francis Ka Leung and Ng, Siew C. (2024). Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach. Microbiology Spectrum, 12 (12). doi: 10.1128/spectrum.01516-24 |
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2024 Journal Article A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlersChew, Charmaine, Matsuyama, Misa, Davies, Peter S. W., Hill, Rebecca J., Morrison, Mark, Martin, Rocio, Codoñer, Francisco M., Knol, Jan and Roeselers, Guus (2024). A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlers. Frontiers in Pediatrics, 12 1193027, 1-11. doi: 10.3389/fped.2024.1193027 |
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2024 Journal Article The biogeography of the mucosa-associated microbiome in health and diseaseSternes, Peter R., Shah, Ayesha, Ayala Pintos, Camila, Fairlie, Thomas, Koloski, Natasha, Kang, Seungha, Tousignant, Kaylyn D., McIlroy, Simon J., Morrison, Mark, Tyson, Gene W. and Holtmann, Gerald J. (2024). The biogeography of the mucosa-associated microbiome in health and disease. Frontiers in Microbiology, 15 1454910, 1-14. doi: 10.3389/fmicb.2024.1454910 |
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2024 Journal Article Noninvasive, microbiome-based diagnosis of inflammatory bowel diseaseZheng, Jiaying, Sun, Qianru, Zhang, Mengjing, Liu, Chengyu, Su, Qi, Zhang, Lin, Xu, Zhilu, Lu, Wenqi, Ching, Jessica, Tang, Whitney, Cheung, Chun Pan, Hamilton, Amy L., Wilson O’Brien, Amy L., Wei, Shu Chen, Bernstein, Charles N., Rubin, David T., Chang, Eugene B., Morrison, Mark, Kamm, Michael A., Chan, Francis K. L., Zhang, Jingwan and Ng, Siew C. (2024). Noninvasive, microbiome-based diagnosis of inflammatory bowel disease. Nature Medicine, 30 (12) 7135, 3555-3567. doi: 10.1038/s41591-024-03280-4 |
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2024 Journal Article The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leakHoedt, Emily C., Carroll, Georgia, Stephensen, Bree, Togher, Katie, Morrison, Mark, Vishnoi, Veral, Makanyengo, Samwel, Draganic, Brian, McManus, Brendan, Clarke, Louise, Shah, Kalpesh, Smith, Stephen R., Talley, Nicholas J., Keely, Simon and Pockney, Peter (2024). The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leak. npj Gut and Liver, 1 (1) 6, 1-6. doi: 10.1038/s44355-024-00006-8 |
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2024 Journal Article Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysisShah, Ayesha, Fairlie, Thomas, Morrison, Mark, Martin, Neal, Hammer, Karin, Hammer, Johann, Koloski, Natasha, Rezaie, Ali, Pimentel, Mark, Kashyap, Purna, Jones, Michael P. and Holtmann, Gerald (2024). Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysis. Journal of Gastroenterology and Hepatology, 39 (11), 1-11. doi: 10.1111/jgh.16668 |
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2024 Journal Article Impact of CFTR modulation on Pseudomonas aeruginosa infection in people with cystic fibrosisLedger, Emma L., Smith, Daniel J., Teh, Jing Jie, Wood, Michelle E., Whibley, Page E., Morrison, Mark, Goldberg, Joanna B., Reid, David W. and Wells, Timothy J. (2024). Impact of CFTR modulation on Pseudomonas aeruginosa infection in people with cystic fibrosis. The Journal of Infectious Diseases, 230 (3), e536-e547. doi: 10.1093/infdis/jiae051 |
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2023 Journal Article PREBIOTIC: a study protocol of a randomised controlled trial to assess prebiotic supplementation in kidney transplant recipients for preventing infections and gastrointestinal upset — a feasibility studyChan, Samuel, Hawley, Carmel M., Pascoe, Elaine M., Cao, Christopher, Campbell, Katrina L., Campbell, Scott B., Francis, Ross S., Hale, Rachael, Isbel, Nicole M., Morrison, Mark and Johnson, David W. (2023). PREBIOTIC: a study protocol of a randomised controlled trial to assess prebiotic supplementation in kidney transplant recipients for preventing infections and gastrointestinal upset — a feasibility study. Pilot and Feasibility Studies, 9 (1) 11, 11. doi: 10.1186/s40814-023-01236-y |
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2023 Journal Article The evolving role of methanogenic archaea in mammalian microbiomesVolmer, James G., McRae, Harley and Morrison, Mark (2023). The evolving role of methanogenic archaea in mammalian microbiomes. Frontiers in Microbiology, 14 1268451, 1-21. doi: 10.3389/fmicb.2023.1268451 |
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2023 Journal Article Alterations to the duodenal microbiota are linked to gastric emptying and symptoms in functional dyspepsiaShanahan, Erin R., Kang, Seungha, Staudacher, Heidi, Shah, Ayesha, Do, Anh, Burns, Grace, Chachay, Veronique S., Koloski, Natasha A., Keely, Simon, Walker, Marjorie M., Talley, Nicholas J., Morrison, Mark and Holtmann, Gerald J. (2023). Alterations to the duodenal microbiota are linked to gastric emptying and symptoms in functional dyspepsia. Gut, 72 (5) 326158, 929-938. doi: 10.1136/gutjnl-2021-326158 |
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2023 Journal Article Small intestinal bacterial overgrowth complicating gastrointestinal manifestations of systemic sclerosis: a systematic review and meta-analysisShah, Ayesha, Pakeerathan, Veenaa, Jones, Michael P., Kashyap, Purna C., Virgo, Kate, Fairlie, Thomas, Morrison, Mark, Ghoshal, Uday C. and Holtmann, Gerald J. (2023). Small intestinal bacterial overgrowth complicating gastrointestinal manifestations of systemic sclerosis: a systematic review and meta-analysis. Journal of Neurogastroenterology and Motility, 29 (2), 132-144. doi: 10.5056/jnm22168 |
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2023 Journal Article Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associatedVolmer, James G., Soo, Rochelle M., Evans, Paul N., Hoedt, Emily C., Astorga Alsina, Ana L., Woodcroft, Benjamin J., Tyson, Gene W., Hugenholtz, Philip and Morrison, Mark (2023). Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associated. BMC Biology, 21 (1) 59, 1-17. doi: 10.1186/s12915-023-01524-2 |
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2023 Journal Article Maternal diet modulates the infant microbiome and intestinal Flt3L necessary for dendritic cell development and immunity to respiratory infectionSikder, Md. Al Amin, Rashid, Ridwan B., Ahmed, Tufael, Sebina, Ismail, Howard, Daniel R., Ullah, Md. Ashik, Rahman, Muhammed Mahfuzur, Lynch, Jason P., Curren, Bodie, Werder, Rhiannon B., Simpson, Jennifer, Bissell, Alec, Morrison, Mark, Walpole, Carina, Radford, Kristen J., Kumar, Vinod, Woodruff, Trent M., Ying, Tan Hui, Ali, Ayesha, Kaiko, Gerard E., Upham, John W., Hoelzle, Robert D., Cuív, Páraic Ó., Holt, Patrick G., Dennis, Paul G. and Phipps, Simon (2023). Maternal diet modulates the infant microbiome and intestinal Flt3L necessary for dendritic cell development and immunity to respiratory infection. Immunity, 56 (5), 1098-1114.e10. doi: 10.1016/j.immuni.2023.03.002 |
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2023 Journal Article Effect of food additives on key bacterial taxa and the mucosa-associated microbiota in Crohn’s disease. The ENIGMA studyLoayza, J.J. Jimenez, Kang, S., Schooth, L., Teh, J. J., de Klerk, A., Noon, E. K., Zhang, J., Hu, J., Hamilton, A. L., Wilson-O’Brien, A., Trakman, G. L., Lin, W., Ching, J., Or, L., Sung, J.J.Y., Yu, J., Ng, S.C., Kamm, M.A. and Morrison, M. (2023). Effect of food additives on key bacterial taxa and the mucosa-associated microbiota in Crohn’s disease. The ENIGMA study. Gut Microbes, 15 (1) 2172670, 1-18. doi: 10.1080/19490976.2023.2172670 |
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2023 Journal Article Characteristics of the gastrointestinal microbiota following prebiotic supplementation in acute kidney transplant recipients: Results from a randomised controlled trialChan, Samuel, Wood, David LA, Hawley, Carmel M., Campbell, Katrina L., Campbell, Scott B., Cao, Christopher, Francis, Ross S., Hale, Rachael, Isbel, Nicole M., Pascoe, Elaine M., Johnson, David W. and Morrison, Mark (2023). Characteristics of the gastrointestinal microbiota following prebiotic supplementation in acute kidney transplant recipients: Results from a randomised controlled trial. Clinical Transplantation, 38 (1) e15175, e15175. doi: 10.1111/ctr.15175 |
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2022 Journal Article Exercise‐induced changes to the human gut microbiota and implications for colorectal cancer: A narrative reviewBoytar, Alexander N., Nitert, Marloes Dekker, Morrision, Mark, Skinner, Tina L. and Jenkins, David G. (2022). Exercise‐induced changes to the human gut microbiota and implications for colorectal cancer: A narrative review. The Journal of Physiology, 600 (24), 5189-5201. doi: 10.1113/jp283702 |
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2022 Journal Article Distinctive gut microbiomes of ankylosing spondylitis and inflammatory bowel disease patients suggest differing roles in pathogenesis and correlate with disease activitySternes, P. R., Brett, L., Phipps, J., Ciccia, F., Kenna, T., de Guzman, E., Zimmermann, K., Morrison, M., Holtmann, G., Klingberg, E., Mauro, D., McIvor, C., Forsblad-d’Elia, H. and Brown, M. A. (2022). Distinctive gut microbiomes of ankylosing spondylitis and inflammatory bowel disease patients suggest differing roles in pathogenesis and correlate with disease activity. Arthritis Research and Therapy, 24 (1) 163, 1-10. doi: 10.1186/s13075-022-02853-3 |
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2022 Journal Article Evaluation of co-circulating pathogens and microbiome from COVID-19 infectionsThissen, James B., Morrison, Michael D., Mulakken, Nisha, Nelson, William C., Daum, Chris, Messenger, Sharon, Wadford, Debra A. and Jaing, Crystal (2022). Evaluation of co-circulating pathogens and microbiome from COVID-19 infections. PLoS One, 17 (12) e0278543, 1-20. doi: 10.1371/journal.pone.0278543 |
