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2025

Journal Article

Is the biogeography of the mucosa-associated microbiota a key factor affecting primary sclerosing cholangitis disease course and treatment?

Lim, Yenkai, Kang, Seungha, Shah, Ayesha, Holtmann, Gerald and Morrison, Mark (2025). Is the biogeography of the mucosa-associated microbiota a key factor affecting primary sclerosing cholangitis disease course and treatment?. Gut, 74 (4), 692-693. doi: 10.1136/gutjnl-2024-334069

Is the biogeography of the mucosa-associated microbiota a key factor affecting primary sclerosing cholangitis disease course and treatment?

2025

Journal Article

SCFA biotherapy delays diabetes in humanized gnotobiotic mice by remodeling mucosal homeostasis and metabolome

Tillett, Bree J., Dwiyanto, Jacky, Secombe, Kate R., George, Thomas, Zhang, Vivian, Anderson, Dovile, Duggan, Emily, Giri, Rabina, Loo, Dorothy, Stoll, Thomas, Morrison, Mark, Begun, Jakob, Hill, Michelle M., Gurzov, Esteban N., Bell, Kirstine J., Saad, Sonia, Barlow, Christopher K., Creek, Darren J., Chong, Chun Wie, Mariño, Eliana and Hamilton-Williams, Emma E. (2025). SCFA biotherapy delays diabetes in humanized gnotobiotic mice by remodeling mucosal homeostasis and metabolome. Nature Communications, 16 (1) 2893, 1-20. doi: 10.1038/s41467-025-58319-y

SCFA biotherapy delays diabetes in humanized gnotobiotic mice by remodeling mucosal homeostasis and metabolome

2025

Journal Article

Small intestinal bacterial overgrowth in chronic liver disease: an updated systematic review and meta-analysis of case-control studies

Shah, Ayesha, Spannenburg, Liam, Thite, Parag, Morrison, Mark, Fairlie, Thomas, Koloski, Natasha, Kashyap, Purna C., Pimentel, Mark, Rezaie, Ali, Gores, Gregory J., Jones, Michael P. and Holtmann, Gerald (2025). Small intestinal bacterial overgrowth in chronic liver disease: an updated systematic review and meta-analysis of case-control studies. eClinicalMedicine, 80 103024, 103024-80. doi: 10.1016/j.eclinm.2024.103024

Small intestinal bacterial overgrowth in chronic liver disease: an updated systematic review and meta-analysis of case-control studies

2024

Journal Article

Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo

Volmer, James G., Evans, Paul N., Soo, Rochelle M., Hugenholtz, Philip, Tyson, Gene W. and Morrison, Mark (2024). Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo. Frontiers in Microbiology, 15 1483533, 1-11. doi: 10.3389/fmicb.2024.1483533

Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo

2024

Journal Article

Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach

Xu, Zhilu, Yeoh, Yun Kit, Tun, Hein M., Fei, Na, Zhang, Jingwan, Morrison, Mark, Kamm, Michael A., Yu, Jun, Chan, Francis Ka Leung and Ng, Siew C. (2024). Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach. Microbiology Spectrum, 12 (12). doi: 10.1128/spectrum.01516-24

Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach

2024

Journal Article

The biogeography of the mucosa-associated microbiome in health and disease

Sternes, Peter R., Shah, Ayesha, Ayala Pintos, Camila, Fairlie, Thomas, Koloski, Natasha, Kang, Seungha, Tousignant, Kaylyn D., McIlroy, Simon J., Morrison, Mark, Tyson, Gene W. and Holtmann, Gerald J. (2024). The biogeography of the mucosa-associated microbiome in health and disease. Frontiers in Microbiology, 15 1454910, 1-14. doi: 10.3389/fmicb.2024.1454910

The biogeography of the mucosa-associated microbiome in health and disease

2024

Journal Article

A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlers

Chew, Charmaine, Matsuyama, Misa, Davies, Peter S. W., Hill, Rebecca J., Morrison, Mark, Martin, Rocio, Codoñer, Francisco M., Knol, Jan and Roeselers, Guus (2024). A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlers. Frontiers in Pediatrics, 12 1193027, 1-11. doi: 10.3389/fped.2024.1193027

A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlers

2024

Journal Article

Noninvasive, microbiome-based diagnosis of inflammatory bowel disease

Zheng, Jiaying, Sun, Qianru, Zhang, Mengjing, Liu, Chengyu, Su, Qi, Zhang, Lin, Xu, Zhilu, Lu, Wenqi, Ching, Jessica, Tang, Whitney, Cheung, Chun Pan, Hamilton, Amy L., Wilson O’Brien, Amy L., Wei, Shu Chen, Bernstein, Charles N., Rubin, David T., Chang, Eugene B., Morrison, Mark, Kamm, Michael A., Chan, Francis K. L., Zhang, Jingwan and Ng, Siew C. (2024). Noninvasive, microbiome-based diagnosis of inflammatory bowel disease. Nature Medicine, 30 (12) 7135, 3555-3567. doi: 10.1038/s41591-024-03280-4

Noninvasive, microbiome-based diagnosis of inflammatory bowel disease

2024

Journal Article

The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leak

Hoedt, Emily C., Carroll, Georgia, Stephensen, Bree, Togher, Katie, Morrison, Mark, Vishnoi, Veral, Makanyengo, Samwel, Draganic, Brian, McManus, Brendan, Clarke, Louise, Shah, Kalpesh, Smith, Stephen R., Talley, Nicholas J., Keely, Simon and Pockney, Peter (2024). The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leak. npj Gut and Liver, 1 (1) 6, 1-6. doi: 10.1038/s44355-024-00006-8

The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leak

2024

Conference Publication

Simethicone suppresses the growth of microbes cultured from the human duodenal mucosa

Fairlie, Thomas, Shah, Ayesha, Lim, Yenkai, Teh, Jing-Jie, Schooth, Lauren, Morrison, Mark and Holtmann, Gerald (2024). Simethicone suppresses the growth of microbes cultured from the human duodenal mucosa. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2024, Adelaide, SA Australia, 14-16 September 2024. Richmond, VIC Australia: John Wiley & Sons.

Simethicone suppresses the growth of microbes cultured from the human duodenal mucosa

2024

Conference Publication

The duodenal mucosa-associated microbiota differs in patients based on their Rome IV classification, and has variable effects on duodenal spheroid barrier function subjects

Schooth, Lauren, Burns, Grace, Minahan, Kyra, Teh, Jing-Jie, Fairlie, Tom, Shah, Ayesha, Holtmann, Gerald and Morrison, Mark (2024). The duodenal mucosa-associated microbiota differs in patients based on their Rome IV classification, and has variable effects on duodenal spheroid barrier function subjects. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2024, Adelaide, SA Australia, 14-16 September 2024. Richmond, VIC Australia: John Wiley & Sons.

The duodenal mucosa-associated microbiota differs in patients based on their Rome IV classification, and has variable effects on duodenal spheroid barrier function subjects

2024

Conference Publication

Self or Bacteria-reactive Th17 Expand from Conventional and Regulatory T Cells in Parabacteroides Goldsteinii Gnotobiotic Arthritic SKG Mice, in Context of Interferon-driven Synovial Inflammatory Macrophages and Reduced Bacterial Immune Regulation

Cai, Benjamin, Tuong, Zewen Kelvin, Morrison, Mark, Bergot, Anne-Sophie and Thomas, Ranjeny (2024). Self or Bacteria-reactive Th17 Expand from Conventional and Regulatory T Cells in Parabacteroides Goldsteinii Gnotobiotic Arthritic SKG Mice, in Context of Interferon-driven Synovial Inflammatory Macrophages and Reduced Bacterial Immune Regulation. ACR Convergence 2024, Washington, DC United States, 15–19 November 2024. Hoboken, NJ United States: John Wiley & Sons.

Self or Bacteria-reactive Th17 Expand from Conventional and Regulatory T Cells in Parabacteroides Goldsteinii Gnotobiotic Arthritic SKG Mice, in Context of Interferon-driven Synovial Inflammatory Macrophages and Reduced Bacterial Immune Regulation

2024

Conference Publication

Does a leopard change its spots? Pseudomonas aeruginosa in cystic fibrosis after CFTR modulation

Ledger, Emma, Smith, Daniel, Teh, Jing Jie, Wood, Michelle, Whibley, Page, Morrison, Mark, Goldberg, Joanna, Reid, David and Wells, Timothy (2024). Does a leopard change its spots? Pseudomonas aeruginosa in cystic fibrosis after CFTR modulation. Abstracts of the 15th Australasian Cystic Fibrosis Conference, Brisbane, QLD, Australia, 2–4 August 2024. Richmond, VIC, Australia: John Wiley & Sons.

Does a leopard change its spots? Pseudomonas aeruginosa in cystic fibrosis after CFTR modulation

2024

Journal Article

Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysis

Shah, Ayesha, Fairlie, Thomas, Morrison, Mark, Martin, Neal, Hammer, Karin, Hammer, Johann, Koloski, Natasha, Rezaie, Ali, Pimentel, Mark, Kashyap, Purna, Jones, Michael P. and Holtmann, Gerald (2024). Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysis. Journal of Gastroenterology and Hepatology, 39 (11), 1-11. doi: 10.1111/jgh.16668

Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysis

2024

Journal Article

Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring

Ding, Lu, Weger, Benjamin D., Liu, Jieying, Zhou, Liyuan, Lim, Yenkai, Wang, Dongmei, Xie, Ziyan, Liu, Jing, Ren, Jing, Zheng, Jia, Zhang, Qian, Yu, Miao, Weger, Meltem, Morrison, Mark, Xiao, Xinhua and Gachon, Frédéric (2024). Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring. iScience, 27 (7) 110343, 110343. doi: 10.1016/j.isci.2024.110343

Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring

2024

Conference Publication

A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional Dyspepsia

Burns, Grace L., Wark, Jasmine A., Hoedt, Emily C., Minahan, Kyra, Sherwin, Simonne, Bruce, Jessica K., Lim, Yenkai, Teh, Jing Jie, Jamaluddin, M. Fairuz, Soh, Wai Sinn, Caban, Shandelle, Almazi, Juhura, Woldu, Ameha S., Dun, Matthew D., Potter, Michael D., Shanahan, Erin R., Holtmann, Gerald J., Walker, Marjorie M., Morrison, Mark, Talley, Nicholas J. and Keely, Simon (2024). A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional Dyspepsia. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02260-1

A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional Dyspepsia

2024

Conference Publication

Small Intestinal Bacterial Overgrowth In Chronic Liver Disease: An Updated Systematic Review And Meta-analysis Of Case-control Studies

Shah, Ayesha, Spannenburg, Liam, Thite, Parag, Fairlie, Thomas, Koloski, Natasha A., Morrison, Mark, Jones, Michael P. and Holtmann, Gerald J. (2024). Small Intestinal Bacterial Overgrowth In Chronic Liver Disease: An Updated Systematic Review And Meta-analysis Of Case-control Studies. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02706-9

Small Intestinal Bacterial Overgrowth In Chronic Liver Disease: An Updated Systematic Review And Meta-analysis Of Case-control Studies

2024

Conference Publication

Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal Mucosa

Fairlie, Thomas, Shah, Ayesha, Lim, Yenkai, Teh, Jing Jie, Schooth, Lauren F., Morrison, Mark and Holtmann, Gerald J. (2024). Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal Mucosa. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02466-1

Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal Mucosa

2024

Conference Publication

Unveiling The Gut-brain Connectivity And Links With The Immune System: Utilising Self-reported Symptoms Or The Response To A Standardised Nutrient Challenge

Moniruzzaman, Md, Shah, Ayesha, Fairlie, Thomas, Noon, Ebony, Morrison, Mark, Talley, Nicholas J., Koloski, Natasha A., Jones, Michael P. and Holtmann, Gerald J. (2024). Unveiling The Gut-brain Connectivity And Links With The Immune System: Utilising Self-reported Symptoms Or The Response To A Standardised Nutrient Challenge. Digestive Disease Week (DDW) 2024, Washington, DC United States, 18-21 May 2024. Elsevier. doi: 10.1016/s0016-5085(24)01585-3

Unveiling The Gut-brain Connectivity And Links With The Immune System: Utilising Self-reported Symptoms Or The Response To A Standardised Nutrient Challenge

2024

Conference Publication

Faecal Microbiome As Targeted Non-invasive Biomarkers For Inflammatory Bowel Disease: A Cross-population Metagenomic Analysis In Six Cohorts

Zheng, Jiaying, Sun, Qianru, Zhang, Mengjing, Liu, Chengyu, Su, Qi, Zhang, Lin, Xu, Zhi Lu, Ching, Jessica Y., Tang, Whitney, Cheung, Chun Pan, Hamilton, Amy L., Brien, Amy Wilson O’, Tun, Hein M., Morrison, Mark, Kamm, Michael A., Chan, Francis K., Zhang, Jingwan and Ng, Siew C. (2024). Faecal Microbiome As Targeted Non-invasive Biomarkers For Inflammatory Bowel Disease: A Cross-population Metagenomic Analysis In Six Cohorts. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)00517-1

Faecal Microbiome As Targeted Non-invasive Biomarkers For Inflammatory Bowel Disease: A Cross-population Metagenomic Analysis In Six Cohorts