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2025 Journal Article SCFA biotherapy delays diabetes in humanized gnotobiotic mice by remodeling mucosal homeostasis and metabolomeTillett, Bree J., Dwiyanto, Jacky, Secombe, Kate R., George, Thomas, Zhang, Vivian, Anderson, Dovile, Duggan, Emily, Giri, Rabina, Loo, Dorothy, Stoll, Thomas, Morrison, Mark, Begun, Jakob, Hill, Michelle M., Gurzov, Esteban N., Bell, Kirstine J., Saad, Sonia, Barlow, Christopher K., Creek, Darren J., Chong, Chun Wie, Mariño, Eliana and Hamilton-Williams, Emma E. (2025). SCFA biotherapy delays diabetes in humanized gnotobiotic mice by remodeling mucosal homeostasis and metabolome. Nature Communications, 16 (1) 2893, 1-20. doi: 10.1038/s41467-025-58319-y |
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2025 Journal Article Small intestinal bacterial overgrowth in chronic liver disease: an updated systematic review and meta-analysis of case-control studiesShah, Ayesha, Spannenburg, Liam, Thite, Parag, Morrison, Mark, Fairlie, Thomas, Koloski, Natasha, Kashyap, Purna C., Pimentel, Mark, Rezaie, Ali, Gores, Gregory J., Jones, Michael P. and Holtmann, Gerald (2025). Small intestinal bacterial overgrowth in chronic liver disease: an updated systematic review and meta-analysis of case-control studies. eClinicalMedicine, 80 103024, 103024-80. doi: 10.1016/j.eclinm.2024.103024 |
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2024 Journal Article Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray KangarooVolmer, James G., Evans, Paul N., Soo, Rochelle M., Hugenholtz, Philip, Tyson, Gene W. and Morrison, Mark (2024). Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo. Frontiers in Microbiology, 15 1483533, 1-11. doi: 10.3389/fmicb.2024.1483533 |
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2024 Journal Article Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approachXu, Zhilu, Yeoh, Yun Kit, Tun, Hein M., Fei, Na, Zhang, Jingwan, Morrison, Mark, Kamm, Michael A., Yu, Jun, Chan, Francis Ka Leung and Ng, Siew C. (2024). Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach. Microbiology Spectrum, 12 (12). doi: 10.1128/spectrum.01516-24 |
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2024 Journal Article A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlersChew, Charmaine, Matsuyama, Misa, Davies, Peter S. W., Hill, Rebecca J., Morrison, Mark, Martin, Rocio, Codoñer, Francisco M., Knol, Jan and Roeselers, Guus (2024). A young child formula supplemented with a synbiotic mixture of scGOS/lcFOS and Bifidobacterium breve M-16V improves the gut microbiota and iron status in healthy toddlers. Frontiers in Pediatrics, 12 1193027, 1-11. doi: 10.3389/fped.2024.1193027 |
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2024 Journal Article The biogeography of the mucosa-associated microbiome in health and diseaseSternes, Peter R., Shah, Ayesha, Ayala Pintos, Camila, Fairlie, Thomas, Koloski, Natasha, Kang, Seungha, Tousignant, Kaylyn D., McIlroy, Simon J., Morrison, Mark, Tyson, Gene W. and Holtmann, Gerald J. (2024). The biogeography of the mucosa-associated microbiome in health and disease. Frontiers in Microbiology, 15 1454910, 1-14. doi: 10.3389/fmicb.2024.1454910 |
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2024 Journal Article Noninvasive, microbiome-based diagnosis of inflammatory bowel diseaseZheng, Jiaying, Sun, Qianru, Zhang, Mengjing, Liu, Chengyu, Su, Qi, Zhang, Lin, Xu, Zhilu, Lu, Wenqi, Ching, Jessica, Tang, Whitney, Cheung, Chun Pan, Hamilton, Amy L., Wilson O’Brien, Amy L., Wei, Shu Chen, Bernstein, Charles N., Rubin, David T., Chang, Eugene B., Morrison, Mark, Kamm, Michael A., Chan, Francis K. L., Zhang, Jingwan and Ng, Siew C. (2024). Noninvasive, microbiome-based diagnosis of inflammatory bowel disease. Nature Medicine, 30 (12) 7135, 3555-3567. doi: 10.1038/s41591-024-03280-4 |
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2024 Journal Article The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leakHoedt, Emily C., Carroll, Georgia, Stephensen, Bree, Togher, Katie, Morrison, Mark, Vishnoi, Veral, Makanyengo, Samwel, Draganic, Brian, McManus, Brendan, Clarke, Louise, Shah, Kalpesh, Smith, Stephen R., Talley, Nicholas J., Keely, Simon and Pockney, Peter (2024). The Microleaks study: 16S community profile and metagenomic shotgun sequencing signatures associated with anastomotic leak. npj Gut and Liver, 1 (1) 6, 1-6. doi: 10.1038/s44355-024-00006-8 |
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2024 Conference Publication Self or Bacteria-reactive Th17 Expand from Conventional and Regulatory T Cells in Parabacteroides Goldsteinii Gnotobiotic Arthritic SKG Mice, in Context of Interferon-driven Synovial Inflammatory Macrophages and Reduced Bacterial Immune RegulationCai, Benjamin, Tuong, Zewen Kelvin, Morrison, Mark, Bergot, Anne-Sophie and Thomas, Ranjeny (2024). Self or Bacteria-reactive Th17 Expand from Conventional and Regulatory T Cells in Parabacteroides Goldsteinii Gnotobiotic Arthritic SKG Mice, in Context of Interferon-driven Synovial Inflammatory Macrophages and Reduced Bacterial Immune Regulation. ACR Convergence 2024, Washington, DC United States, 15–19 November 2024. Hoboken, NJ United States: John Wiley & Sons. |
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2024 Conference Publication Simethicone suppresses the growth of microbes cultured from the human duodenal mucosaFairlie, Thomas, Shah, Ayesha, Lim, Yenkai, Teh, Jing-Jie, Schooth, Lauren, Morrison, Mark and Holtmann, Gerald (2024). Simethicone suppresses the growth of microbes cultured from the human duodenal mucosa. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2024, Adelaide, SA Australia, 14-16 September 2024. Richmond, VIC Australia: John Wiley & Sons. |
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2024 Conference Publication The duodenal mucosa-associated microbiota differs in patients based on their Rome IV classification, and has variable effects on duodenal spheroid barrier function subjectsSchooth, Lauren, Burns, Grace, Minahan, Kyra, Teh, Jing-Jie, Fairlie, Tom, Shah, Ayesha, Holtmann, Gerald and Morrison, Mark (2024). The duodenal mucosa-associated microbiota differs in patients based on their Rome IV classification, and has variable effects on duodenal spheroid barrier function subjects. Gastroenterological Society of Australia (GESA) Australian Gastroenterology Week (AGW) 2024, Adelaide, SA Australia, 14-16 September 2024. Richmond, VIC Australia: John Wiley & Sons. |
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2024 Conference Publication Does a leopard change its spots? Pseudomonas aeruginosa in cystic fibrosis after CFTR modulationLedger, Emma, Smith, Daniel, Teh, Jing Jie, Wood, Michelle, Whibley, Page, Morrison, Mark, Goldberg, Joanna, Reid, David and Wells, Timothy (2024). Does a leopard change its spots? Pseudomonas aeruginosa in cystic fibrosis after CFTR modulation. Abstracts of the 15th Australasian Cystic Fibrosis Conference, Brisbane, QLD, Australia, 2–4 August 2024. Richmond, VIC, Australia: John Wiley & Sons. |
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2024 Journal Article Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysisShah, Ayesha, Fairlie, Thomas, Morrison, Mark, Martin, Neal, Hammer, Karin, Hammer, Johann, Koloski, Natasha, Rezaie, Ali, Pimentel, Mark, Kashyap, Purna, Jones, Michael P. and Holtmann, Gerald (2024). Prevalence of small intestinal bacterial overgrowth in intestinal failure syndrome: A systematic review and meta‐analysis. Journal of Gastroenterology and Hepatology, 39 (11), 1-11. doi: 10.1111/jgh.16668 |
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2024 Conference Publication Small Intestinal Bacterial Overgrowth In Intestinal Failure: A Systematic Review And Meta-analysisFairlie, Thomas, Shah, Ayesha, Martin, Neal, Jones, Michael P., Koloski, Natasha A., Morrison, Mark and Holtmann, Gerald J. (2024). Small Intestinal Bacterial Overgrowth In Intestinal Failure: A Systematic Review And Meta-analysis. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02701-x |
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2024 Conference Publication The Duodenal Mucosa-associated Microbiota Of Patients With A Disorder Of Gut-brain Interaction Can Be Differentiated By Rome IV CriteriaSchooth, Lauren F., Kang, Seungha, Fairlie, Thomas, Lim, Yenkai, Teh, Jing Jie, Hoedt, Emily C., Keely, Simon, Shah, Ayesha, Holtmann, Gerald J. and Morrison, Mark (2024). The Duodenal Mucosa-associated Microbiota Of Patients With A Disorder Of Gut-brain Interaction Can Be Differentiated By Rome IV Criteria. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02266-2 |
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2024 Conference Publication Quantifying Artificial Sweeteners And Emulsifiers In Crohn's Disease And Their Relationship With Disease With Disease Activity. The ENIGMA StudyHu, Jielun, Zhang, Jingwan, Ruan, Yanjiao, Trakman, Gina L., Hamilton, Amy L., Lin, Winnie Y., Sun, Yang, Ching, Jessica Y., Teh, Jing Jie, Kang, Seungha, O’Brien, Amy Wilson, Stanley, Annalise, Sung, Joseph J.Y., Yu, Jun, Miao, Yinglei, Morrison, Mark, Kamm, Michael A. and Ng, Siew C. (2024). Quantifying Artificial Sweeteners And Emulsifiers In Crohn's Disease And Their Relationship With Disease With Disease Activity. The ENIGMA Study. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)03360-2 |
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2024 Conference Publication A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional DyspepsiaBurns, Grace L., Wark, Jasmine A., Hoedt, Emily C., Minahan, Kyra, Sherwin, Simonne, Bruce, Jessica K., Lim, Yenkai, Teh, Jing Jie, Jamaluddin, M. Fairuz, Soh, Wai Sinn, Caban, Shandelle, Almazi, Juhura, Woldu, Ameha S., Dun, Matthew D., Potter, Michael D., Shanahan, Erin R., Holtmann, Gerald J., Walker, Marjorie M., Morrison, Mark, Talley, Nicholas J. and Keely, Simon (2024). A Novel Isolate Of Streptococcus Salivarius, AGIRA0003, Disrupts Tight Junctions Ex Vivo In Functional Dyspepsia. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02260-1 |
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2024 Conference Publication Small Intestinal Bacterial Overgrowth In Chronic Liver Disease: An Updated Systematic Review And Meta-analysis Of Case-control StudiesShah, Ayesha, Spannenburg, Liam, Thite, Parag, Fairlie, Thomas, Koloski, Natasha A., Morrison, Mark, Jones, Michael P. and Holtmann, Gerald J. (2024). Small Intestinal Bacterial Overgrowth In Chronic Liver Disease: An Updated Systematic Review And Meta-analysis Of Case-control Studies. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02706-9 |
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2024 Conference Publication Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal MucosaFairlie, Thomas, Shah, Ayesha, Lim, Yenkai, Teh, Jing Jie, Schooth, Lauren F., Morrison, Mark and Holtmann, Gerald J. (2024). Simethicone Suppresses The Growth Of Microbes Cultured From The Human Duodenal Mucosa. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)02466-1 |
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2024 Conference Publication Faecal Microbiome As Targeted Non-invasive Biomarkers For Inflammatory Bowel Disease: A Cross-population Metagenomic Analysis In Six CohortsZheng, Jiaying, Sun, Qianru, Zhang, Mengjing, Liu, Chengyu, Su, Qi, Zhang, Lin, Xu, Zhi Lu, Ching, Jessica Y., Tang, Whitney, Cheung, Chun Pan, Hamilton, Amy L., Brien, Amy Wilson O’, Tun, Hein M., Morrison, Mark, Kamm, Michael A., Chan, Francis K., Zhang, Jingwan and Ng, Siew C. (2024). Faecal Microbiome As Targeted Non-invasive Biomarkers For Inflammatory Bowel Disease: A Cross-population Metagenomic Analysis In Six Cohorts. Digestive Disease Week (DDW) 2024, Chicago, IL United States, 18-21 May 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(24)00517-1 |
