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Dr Sally Mortlock
Dr

Sally Mortlock

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Overview

Background

Dr Sally Mortlock is a genetic epidemiologist and NECST Research Fellow who leads the Genetic Epidemiology stream at the Australian Women and Girls Health Research (AWaGHR) Centre, University of Queensland. Her research integrates genomics with life course epidemiology to understand how genetic, environmental, and lifestyle factors shape women’s health across the lifespan.

Her work focuses on reproductive and menstrual health, particularly endometriosis and related conditions, with the aim of improving understanding of disease mechanisms, risk, diagnosis, and personalised approaches to care.

Research areas include:

  • Genetic epidemiology and reproductive genomics
  • Women’s health across the life course
  • Endometriosis and reproductive disorders
  • Longitudinal cohort studies and life course epidemiology
  • Genetic risk prediction and causal inference methods (including Mendelian randomisation)
  • Multi-omics and biological pathway analysis

Dr Mortlock previously spent seven years as lead computational biologist within the Genomics of Reproduction Disorders group at the Institute for Molecular Bioscience, contributing to internationally recognised research in reproductive genomics. She now combines this expertise with large-scale longitudinal health data, including genetic resources within the Australian Longitudinal Study on Women’s Health, to investigate women’s health trajectories over time.

Availability

Dr Sally Mortlock is:
Available for supervision

Qualifications

  • Doctor of Philosophy, University of Sydney

Research impacts

Dr Morltock’s research aims to improve understanding, diagnosis, and management of endometriosis and women’s reproductive health by translating genomic and epidemiological research into knowledge, clinical, policy, and public health outcomes.

Her work has helped identify genetic risk factors, shared disease pathways, and biological mechanisms underlying endometriosis and related conditions. These discoveries support efforts toward earlier diagnosis, improved disease classification, and development of more personalised approaches to care.

Research contributions include:

  • Identifying genetic risk regions and shared mechanisms linking endometriosis with other diseases
  • Developing genomic resources (including endometrial eQTL and mQTL datasets) that are now widely used internationally to interpret disease biology and identify therapeutic targets
  • Generating evidence from large longitudinal cohorts, including the Australian Longitudinal Study on Women’s Health (ALSWH), to understand how genetic, environmental, and lifestyle factors influence women’s health across the life course

This research has informed national and international policy and guideline development. Findings have contributed evidence cited in the WHO report Endometriosis: disease mechanisms and health disparities (2023), the ACOG Guideline No. 425a, European policy initiatives on women’s reproductive health, and the RANZCOG Australian Living Evidence Guideline for Endometriosis.

Works

Search Professor Sally Mortlock’s works on UQ eSpace

74 works between 2015 and 2026

1 - 20 of 74 works

2026

Journal Article

Development of an early prediction model for endometriosis risk: the simplified adolescent factors for endometriosis (SAFE) score

Mishra, Gita D., Baneshi, Mohammad Reza, Mortlock, Sally, Montgomery, Grant W., Doust, Jenny, Dobson, Annette J. and Abbott, Jason (2026). Development of an early prediction model for endometriosis risk: the simplified adolescent factors for endometriosis (SAFE) score. eClinicalMedicine, 93 103806, 1-13. doi: 10.1016/j.eclinm.2026.103806

Development of an early prediction model for endometriosis risk: the simplified adolescent factors for endometriosis (SAFE) score

2026

Journal Article

Impact of adverse childhood experiences on health-related quality of life in Australian women with endometriosis: a population-based cohort study

Gete, Dereje G., Doust, Jenny, Mortlock, Sally, Abbott, Jason and Mishra, Gita D. (2026). Impact of adverse childhood experiences on health-related quality of life in Australian women with endometriosis: a population-based cohort study. Quality of Life Research, 35 (3) 59, 1-14. doi: 10.1007/s11136-025-04160-1

Impact of adverse childhood experiences on health-related quality of life in Australian women with endometriosis: a population-based cohort study

2026

Journal Article

A feasibility study to examine the link between lifestyle and environmental exposures and endometriosis phenotype

Knapman, Blake, Ng, Cecilia, McKinnon, Brett, Gonzalez, Adriana Meneses, Amoako, Akwasi, Henders, Anjali K., Abbott, Jason and Mortlock, Sally (2026). A feasibility study to examine the link between lifestyle and environmental exposures and endometriosis phenotype. Reproductive BioMedicine Online 105500, 105500. doi: 10.1016/j.rbmo.2026.105500

A feasibility study to examine the link between lifestyle and environmental exposures and endometriosis phenotype

2025

Journal Article

M2 macrophages are major mediators of germline risk of endometriosis and explain pleiotropy with comorbid traits

Ochoa, Soledad, Rasquel‐Oliveira, Fernanda S., McKinnon, Brett, Haro, Marcela, Subramaniam, Sugarniya, Coetzee, Simon, Yu, Pak, Anglesio, Michael S., Wright, Kelly N., Meyer, Raanan, Porter, Anne E., Gargett, Caroline E., Mortlock, Sally, Montgomery, Grant W., Rogers, Michael S. and Lawrenson, Kate (2025). M2 macrophages are major mediators of germline risk of endometriosis and explain pleiotropy with comorbid traits. Advanced Science, 12 (41) e15285, 1-15. doi: 10.1002/advs.202415285

M2 macrophages are major mediators of germline risk of endometriosis and explain pleiotropy with comorbid traits

2025

Conference Publication

Deconvolution of bulk endometrial tissue identifies cell type specific gene regulation associated with endometriosis

Hota, Monalisa, McKinnon, Brett, Montgomery, Grant, McRae, Allan and Mortlock, Sally (2025). Deconvolution of bulk endometrial tissue identifies cell type specific gene regulation associated with endometriosis. 58th Conference of the European Society of Human Genetics (ESHG), Milan, Italy, 24 - 27 May 2025. London, United Kingdom: Nature Publishing Group.

Deconvolution of bulk endometrial tissue identifies cell type specific gene regulation associated with endometriosis

2025

Journal Article

Regulation of RNA splicing in endometrial tissue and its association with endometriosis

Yang, Fei, Qi, Ting, McRae, Allan F., Rogers, Peter A.W., Montgomery, Grant W. and Mortlock, Sally (2025). Regulation of RNA splicing in endometrial tissue and its association with endometriosis. iScience, 28 (9) 113207, 113207. doi: 10.1016/j.isci.2025.113207

Regulation of RNA splicing in endometrial tissue and its association with endometriosis

2025

Journal Article

Endometrial cell-type specific regulation of the endocannabinoids system and the impact of menstrual cycle and endometriosis

Tanaka, Keisuke, Subramaniam, Sugarniya, Atluri, Sharat, Amoako, Akwasi A., Mortlock, Sally, Montgomery, Grant W. and McKinnon, Brett (2025). Endometrial cell-type specific regulation of the endocannabinoids system and the impact of menstrual cycle and endometriosis. Cannabis and Cannabinoid Research, 10 (4) can.2024.0081, 512-526. doi: 10.1089/can.2024.0081

Endometrial cell-type specific regulation of the endocannabinoids system and the impact of menstrual cycle and endometriosis

2025

Journal Article

Validation of self-reported endometriosis

Gete, Dereje G., Dobson, Annette J., Mortlock, Sally, Montgomery, Grant W., Hockey, Richard, Doust, Jenny and Mishra, Gita D. (2025). Validation of self-reported endometriosis. Maturitas, 199 108642, 1-7. doi: 10.1016/j.maturitas.2025.108642

Validation of self-reported endometriosis

2025

Journal Article

The influence of genetics on the endocannabinoid system gene expression and relevance for targeting reproductive conditions

Tanaka, Keisuke, Amoako, Akwasi A., Mortlock, Sally, Rogers, Peter A. W., Holdsworth-Carson, Sarah J., Donoghue, Jacqueline F., Teh, Wan Tinn, Montgomery, Grant W. and McKinnon, Brett (2025). The influence of genetics on the endocannabinoid system gene expression and relevance for targeting reproductive conditions. Journal of Cannabis Research, 7 (1) 29, 1-13. doi: 10.1186/s42238-025-00275-x

The influence of genetics on the endocannabinoid system gene expression and relevance for targeting reproductive conditions

2025

Journal Article

Interaction between genetic risk and comorbid conditions in endometriosis

McGrath, Isabelle M., Rukins, Valentina, Laisk, Triin, Mortlock, Sally and Montgomery, Grant W. (2025). Interaction between genetic risk and comorbid conditions in endometriosis. Human Genetics and Genomics Advances, 6 (3) 100456, 1-11. doi: 10.1016/j.xhgg.2025.100456

Interaction between genetic risk and comorbid conditions in endometriosis

2025

Journal Article

Methylation risk score modelling in endometriosis: evidence for fon-genetic DNA methylation effects in a case–control study

Thong, Li Ying, McRae, Allan F., Sirota, Marina, Giudice, Linda, Montgomery, Grant W. and Mortlock, Sally (2025). Methylation risk score modelling in endometriosis: evidence for fon-genetic DNA methylation effects in a case–control study. International Journal of Molecular Sciences, 26 (8) 3760, 3760. doi: 10.3390/ijms26083760

Methylation risk score modelling in endometriosis: evidence for fon-genetic DNA methylation effects in a case–control study

2024

Conference Publication

Decoding the genetic links between endometriosis and its comorbidities: implications for disease risk and aetiology

McGrath, Isabelle, Montgomery, Grant W. and Mortlock, Sally (2024). Decoding the genetic links between endometriosis and its comorbidities: implications for disease risk and aetiology. 57th Conference of the European-Society-of-Human-Genetics (ESHG), Berlin Germany, Jun 01-04, 2024. LONDON: SPRINGERNATURE.

Decoding the genetic links between endometriosis and its comorbidities: implications for disease risk and aetiology

2024

Journal Article

Risk of iron deficiency in women with endometriosis: a population-based prospective cohort study

Gete, Dereje G., Doust, Jenny, Mortlock, Sally, Montgomery, Grant and Mishra, Gita D. (2024). Risk of iron deficiency in women with endometriosis: a population-based prospective cohort study. Women's Health Issues, 34 (3), 317-324. doi: 10.1016/j.whi.2024.03.004

Risk of iron deficiency in women with endometriosis: a population-based prospective cohort study

2024

Journal Article

Genome-wide association study meta-analysis of dizygotic twinning illuminates genetic regulation of female fecundity

Mbarek, Hamdi, Gordon, Scott D., Duffy, David L., Hubers, Nikki, Mortlock, Sally, Beck, Jeffrey J., Hottenga, Jouke-Jan, Pool, René, Dolan, Conor V., Actkins, Ky’Era V., Gerring, Zachary F., Van Dongen, Jenny, Ehli, Erik A., Iacono, William G., Mcgue, Matt, Chasman, Daniel I., Gallagher, C. Scott, Schilit, Samantha L. P., Morton, Cynthia C., Paré, Guillaume, Willemsen, Gonneke, Whiteman, David C., Olsen, Catherine M., Derom, Catherine, Vlietinck, Robert, Gudbjartsson, Daniel, Cannon-Albright, Lisa, Krapohl, Eva, Plomin, Robert ... Martin, Nicholas G. (2024). Genome-wide association study meta-analysis of dizygotic twinning illuminates genetic regulation of female fecundity. Human Reproduction, 39 (1), 240-257. doi: 10.1093/humrep/dead247

Genome-wide association study meta-analysis of dizygotic twinning illuminates genetic regulation of female fecundity

2024

Conference Publication

Dynamic transcriptomic changes in endometrial tissue and its association with endometriosis and related infertility

Yang, Fei, Qi, Ting, Mcrae, Allan F., Rogers, Peter A. W., Mortlock, Sally and Montgomery, Grant W. (2024). Dynamic transcriptomic changes in endometrial tissue and its association with endometriosis and related infertility. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow Scotland, Jun 10-13, 2023. LONDON: SPRINGERNATURE.

Dynamic transcriptomic changes in endometrial tissue and its association with endometriosis and related infertility

2023

Journal Article

Genomic analysis of lymphoma risk in Bullmastiff dogs

Mortlock, Sally A., Asada, Monica C., Soh, Pamela Xing Yi, Hsu, Wei-Tse, Lee, Carol, Bennett, Peter F., Taylor, Rosanne M., Khatkar, Mehar S. and Williamson, Peter (2023). Genomic analysis of lymphoma risk in Bullmastiff dogs. Veterinary Sciences, 10 (12) 703, 1-14. doi: 10.3390/vetsci10120703

Genomic analysis of lymphoma risk in Bullmastiff dogs

2023

Journal Article

Polygenic risk score phenome-wide association study reveals an association between endometriosis and testosterone

McGrath, Isabelle M., Montgomery, Grant W., Mortlock, Sally and International Endometriosis Genetics Consortium (2023). Polygenic risk score phenome-wide association study reveals an association between endometriosis and testosterone. BMC Medicine, 21 (1) 482, 1-14. doi: 10.1186/s12916-023-03184-z

Polygenic risk score phenome-wide association study reveals an association between endometriosis and testosterone

2023

Journal Article

Gene expression profiles separate endometriosis lesion subtypes and indicate a sensitivity of endometrioma to estrogen suppressive treatments through elevated ESR2 expression

Marla, Sushma, Mortlock, Sally, Heinosalo, Taija, Poutanen, Matti, Montgomery, Grant W. and McKinnon, Brett David (2023). Gene expression profiles separate endometriosis lesion subtypes and indicate a sensitivity of endometrioma to estrogen suppressive treatments through elevated ESR2 expression. BMC Medicine, 21 (1) 460, 1-15. doi: 10.1186/s12916-023-03166-1

Gene expression profiles separate endometriosis lesion subtypes and indicate a sensitivity of endometrioma to estrogen suppressive treatments through elevated ESR2 expression

2023

Journal Article

Associations between endometriosis and common symptoms: findings from the Australian Longitudinal Study on Women’s Health

Gete, Dereje G., Doust, Jenny, Mortlock, Sally, Montgomery, Grant and Mishra, Gita D. (2023). Associations between endometriosis and common symptoms: findings from the Australian Longitudinal Study on Women’s Health. American Journal of Obstetrics and Gynecology, 229 (5), 536.e1-536.e20. doi: 10.1016/j.ajog.2023.07.033

Associations between endometriosis and common symptoms: findings from the Australian Longitudinal Study on Women’s Health

2023

Journal Article

A molecular staging model for accurately dating the endometrial biopsy

Teh, W. T., Chung, J., Holdsworth-Carson, S. J., Donoghue, J. F., Healey, M., Rees, H. C., Bittinger, S., Obers, V., Sloggett, C., Kendarsari, R., Fung, J. N., Mortlock, S., Montgomery, G. W., Girling, J. E. and Rogers, P. A. W. (2023). A molecular staging model for accurately dating the endometrial biopsy. Nature Communications, 14 (1) 6222, 6222. doi: 10.1038/s41467-023-41979-z

A molecular staging model for accurately dating the endometrial biopsy

Funding

Current funding

  • 2026 - 2028
    Understanding mechanisms and optimising health after early menopause (Externally Led MRFF IPLM by University of Melbourne)
    University of Melbourne
    Open grant
  • 2026 - 2030
    Australian Perimenopause and Menopause (A-PaM) Study
    NHMRC MRFF Infertility Pregnancy Loss and Menopause
    Open grant
  • 2025 - 2026
    Designing an Australian National Adaptive Platform Trial for Endometriosis
    MRFF Innovative Trials
    Open grant
  • 2025 - 2027
    Characterising endometriosis heterogeneity to improve diagnosis and disease management. (NECST Postdoctoral Fellowship via UNSW)
    National Endometriosis Clinical and Scientific Trials Network PhD and Post-Doctoral Fellowships
    Open grant
  • 2024 - 2028
    Hormonal influences on inflammation in endometriosis (NIH project administered by University of Texas Health Science Center at San Antonio)
    The University of Texas Health Science Center at San Antonio
    Open grant

Past funding

  • 2024 - 2026
    Genotyping participants in the GELLES study
    Queensland Department of Health
    Open grant
  • 2022 - 2023
    Environmental Risk Factors for Endometriosis
    Endometriosis Australia Ltd
    Open grant
  • 2020 - 2025
    Genetic variants, Early Life exposures, and Longitudinal Endometriosis Symptoms study (GELLES)
    NHMRC MRFF EPCDR - Endometriosis Research
    Open grant
  • 2019 - 2023
    Causes of Endometriosis
    Research Donation Generic
    Open grant

Supervision

Availability

Dr Sally Mortlock is:
Available for supervision

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Available projects

  • Understanding Endometriosis Heterogeneity Across the Life Course

    Endometriosis is a heterogeneous condition characterised by wide variation in symptoms, comorbidities, lesion types, and treatment response, contributing to delayed diagnosis and poor outcomes. This PhD project will investigate the genetic and life course drivers of this heterogeneity, examining how symptom profiles and comorbidities cluster and vary across women.

    Using large-scale datasets including the Australian Longitudinal Study on Women’s Health (ALSWH) and international genomic resources, the project will characterise disease subtypes, assess causal links between endometriosis, symptoms and comorbidities, and explore how genetic risk interacts with life course exposures to shape symptom trajectories. Advanced methods including longitudinal and trajectory modelling and causal inference will be applied.

    The project will generate new insights into endometriosis subtypes, underlying mechanisms, and gene–environment interactions, with the goal of improving early diagnosis and informing more personalised, targeted care pathways.

  • Understanding Shared Mechanisms Across Reproductive and Menstrual Health

    This project will apply genetic epidemiology and life course approaches to investigate the causes, overlap, and shared biological mechanisms underlying reproductive and menstrual disorders across women’s lives. Focusing on conditions including endometriosis, endometritis, infertility, polyendocrine metabolic ovarian syndrome (PMOS), fibroids, heavy menstrual bleeding, and related reproductive traits and milestones (e.g., age at menarche and menopause), the project will examine how co-occurring conditions interact and contribute to women’s health across the life course. Moving beyond a disease-centred approach, the research will adopt a person-centred framework to identify shared pathways and causal links between reproductive disorders, fertility outcomes, gynaecological cancers, and broader chronic disease risk. Using methods including Mendelian randomisation, polygenic risk modelling, and interaction analyses, the project will investigate how genetic susceptibility and life course exposures (e.g., BMI, contraceptive use, reproductive stage) influence disease risk, infertility, and condition overlap. Findings will support earlier identification of risk, targeted interventions, and improved women’s health outcomes.

Supervision history

Current supervision

  • Doctor Philosophy

    Exploring the role of epidemiological and molecular factors in endometriosis risk

    Principal Advisor

    Other advisors: Professor Allan McRae

  • Doctor Philosophy

    Leveraging multi-omic and epidemiological data to understand endometriosis and its symptomatology

    Associate Advisor

    Other advisors: Professor Naomi Wray, Professor Allan McRae

Completed supervision

Media

Enquiries

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