Overview
Background
Dr Sally Mortlock is a genetic epidemiologist and NECST Research Fellow who leads the Genetic Epidemiology stream at the Australian Women and Girls Health Research (AWaGHR) Centre, University of Queensland. Her research integrates genomics with life course epidemiology to understand how genetic, environmental, and lifestyle factors shape women’s health across the lifespan.
Her work focuses on reproductive and menstrual health, particularly endometriosis and related conditions, with the aim of improving understanding of disease mechanisms, risk, diagnosis, and personalised approaches to care.
Research areas include:
- Genetic epidemiology and reproductive genomics
- Women’s health across the life course
- Endometriosis and reproductive disorders
- Longitudinal cohort studies and life course epidemiology
- Genetic risk prediction and causal inference methods (including Mendelian randomisation)
- Multi-omics and biological pathway analysis
Dr Mortlock previously spent seven years as lead computational biologist within the Genomics of Reproduction Disorders group at the Institute for Molecular Bioscience, contributing to internationally recognised research in reproductive genomics. She now combines this expertise with large-scale longitudinal health data, including genetic resources within the Australian Longitudinal Study on Women’s Health, to investigate women’s health trajectories over time.
Availability
- Dr Sally Mortlock is:
- Available for supervision
Fields of research
Qualifications
- Doctor of Philosophy, University of Sydney
Research impacts
Dr Morltock’s research aims to improve understanding, diagnosis, and management of endometriosis and women’s reproductive health by translating genomic and epidemiological research into knowledge, clinical, policy, and public health outcomes.
Her work has helped identify genetic risk factors, shared disease pathways, and biological mechanisms underlying endometriosis and related conditions. These discoveries support efforts toward earlier diagnosis, improved disease classification, and development of more personalised approaches to care.
Research contributions include:
- Identifying genetic risk regions and shared mechanisms linking endometriosis with other diseases
- Developing genomic resources (including endometrial eQTL and mQTL datasets) that are now widely used internationally to interpret disease biology and identify therapeutic targets
- Generating evidence from large longitudinal cohorts, including the Australian Longitudinal Study on Women’s Health (ALSWH), to understand how genetic, environmental, and lifestyle factors influence women’s health across the life course
This research has informed national and international policy and guideline development. Findings have contributed evidence cited in the WHO report Endometriosis: disease mechanisms and health disparities (2023), the ACOG Guideline No. 425a, European policy initiatives on women’s reproductive health, and the RANZCOG Australian Living Evidence Guideline for Endometriosis.
Works
Search Professor Sally Mortlock’s works on UQ eSpace
2026
Journal Article
Development of an early prediction model for endometriosis risk: the simplified adolescent factors for endometriosis (SAFE) score
Mishra, Gita D., Baneshi, Mohammad Reza, Mortlock, Sally, Montgomery, Grant W., Doust, Jenny, Dobson, Annette J. and Abbott, Jason (2026). Development of an early prediction model for endometriosis risk: the simplified adolescent factors for endometriosis (SAFE) score. eClinicalMedicine, 93 103806, 1-13. doi: 10.1016/j.eclinm.2026.103806
2026
Journal Article
Impact of adverse childhood experiences on health-related quality of life in Australian women with endometriosis: a population-based cohort study
Gete, Dereje G., Doust, Jenny, Mortlock, Sally, Abbott, Jason and Mishra, Gita D. (2026). Impact of adverse childhood experiences on health-related quality of life in Australian women with endometriosis: a population-based cohort study. Quality of Life Research, 35 (3) 59, 1-14. doi: 10.1007/s11136-025-04160-1
2026
Journal Article
A feasibility study to examine the link between lifestyle and environmental exposures and endometriosis phenotype
Knapman, Blake, Ng, Cecilia, McKinnon, Brett, Gonzalez, Adriana Meneses, Amoako, Akwasi, Henders, Anjali K., Abbott, Jason and Mortlock, Sally (2026). A feasibility study to examine the link between lifestyle and environmental exposures and endometriosis phenotype. Reproductive BioMedicine Online 105500, 105500. doi: 10.1016/j.rbmo.2026.105500
2025
Journal Article
M2 macrophages are major mediators of germline risk of endometriosis and explain pleiotropy with comorbid traits
Ochoa, Soledad, Rasquel‐Oliveira, Fernanda S., McKinnon, Brett, Haro, Marcela, Subramaniam, Sugarniya, Coetzee, Simon, Yu, Pak, Anglesio, Michael S., Wright, Kelly N., Meyer, Raanan, Porter, Anne E., Gargett, Caroline E., Mortlock, Sally, Montgomery, Grant W., Rogers, Michael S. and Lawrenson, Kate (2025). M2 macrophages are major mediators of germline risk of endometriosis and explain pleiotropy with comorbid traits. Advanced Science, 12 (41) e15285, 1-15. doi: 10.1002/advs.202415285
2025
Conference Publication
Deconvolution of bulk endometrial tissue identifies cell type specific gene regulation associated with endometriosis
Hota, Monalisa, McKinnon, Brett, Montgomery, Grant, McRae, Allan and Mortlock, Sally (2025). Deconvolution of bulk endometrial tissue identifies cell type specific gene regulation associated with endometriosis. 58th Conference of the European Society of Human Genetics (ESHG), Milan, Italy, 24 - 27 May 2025. London, United Kingdom: Nature Publishing Group.
2025
Journal Article
Regulation of RNA splicing in endometrial tissue and its association with endometriosis
Yang, Fei, Qi, Ting, McRae, Allan F., Rogers, Peter A.W., Montgomery, Grant W. and Mortlock, Sally (2025). Regulation of RNA splicing in endometrial tissue and its association with endometriosis. iScience, 28 (9) 113207, 113207. doi: 10.1016/j.isci.2025.113207
2025
Journal Article
Endometrial cell-type specific regulation of the endocannabinoids system and the impact of menstrual cycle and endometriosis
Tanaka, Keisuke, Subramaniam, Sugarniya, Atluri, Sharat, Amoako, Akwasi A., Mortlock, Sally, Montgomery, Grant W. and McKinnon, Brett (2025). Endometrial cell-type specific regulation of the endocannabinoids system and the impact of menstrual cycle and endometriosis. Cannabis and Cannabinoid Research, 10 (4) can.2024.0081, 512-526. doi: 10.1089/can.2024.0081
2025
Journal Article
Validation of self-reported endometriosis
Gete, Dereje G., Dobson, Annette J., Mortlock, Sally, Montgomery, Grant W., Hockey, Richard, Doust, Jenny and Mishra, Gita D. (2025). Validation of self-reported endometriosis. Maturitas, 199 108642, 1-7. doi: 10.1016/j.maturitas.2025.108642
2025
Journal Article
The influence of genetics on the endocannabinoid system gene expression and relevance for targeting reproductive conditions
Tanaka, Keisuke, Amoako, Akwasi A., Mortlock, Sally, Rogers, Peter A. W., Holdsworth-Carson, Sarah J., Donoghue, Jacqueline F., Teh, Wan Tinn, Montgomery, Grant W. and McKinnon, Brett (2025). The influence of genetics on the endocannabinoid system gene expression and relevance for targeting reproductive conditions. Journal of Cannabis Research, 7 (1) 29, 1-13. doi: 10.1186/s42238-025-00275-x
2025
Journal Article
Interaction between genetic risk and comorbid conditions in endometriosis
McGrath, Isabelle M., Rukins, Valentina, Laisk, Triin, Mortlock, Sally and Montgomery, Grant W. (2025). Interaction between genetic risk and comorbid conditions in endometriosis. Human Genetics and Genomics Advances, 6 (3) 100456, 1-11. doi: 10.1016/j.xhgg.2025.100456
2025
Journal Article
Methylation risk score modelling in endometriosis: evidence for fon-genetic DNA methylation effects in a case–control study
Thong, Li Ying, McRae, Allan F., Sirota, Marina, Giudice, Linda, Montgomery, Grant W. and Mortlock, Sally (2025). Methylation risk score modelling in endometriosis: evidence for fon-genetic DNA methylation effects in a case–control study. International Journal of Molecular Sciences, 26 (8) 3760, 3760. doi: 10.3390/ijms26083760
2024
Conference Publication
Decoding the genetic links between endometriosis and its comorbidities: implications for disease risk and aetiology
McGrath, Isabelle, Montgomery, Grant W. and Mortlock, Sally (2024). Decoding the genetic links between endometriosis and its comorbidities: implications for disease risk and aetiology. 57th Conference of the European-Society-of-Human-Genetics (ESHG), Berlin Germany, Jun 01-04, 2024. LONDON: SPRINGERNATURE.
2024
Journal Article
Risk of iron deficiency in women with endometriosis: a population-based prospective cohort study
Gete, Dereje G., Doust, Jenny, Mortlock, Sally, Montgomery, Grant and Mishra, Gita D. (2024). Risk of iron deficiency in women with endometriosis: a population-based prospective cohort study. Women's Health Issues, 34 (3), 317-324. doi: 10.1016/j.whi.2024.03.004
2024
Journal Article
Genome-wide association study meta-analysis of dizygotic twinning illuminates genetic regulation of female fecundity
Mbarek, Hamdi, Gordon, Scott D., Duffy, David L., Hubers, Nikki, Mortlock, Sally, Beck, Jeffrey J., Hottenga, Jouke-Jan, Pool, René, Dolan, Conor V., Actkins, Ky’Era V., Gerring, Zachary F., Van Dongen, Jenny, Ehli, Erik A., Iacono, William G., Mcgue, Matt, Chasman, Daniel I., Gallagher, C. Scott, Schilit, Samantha L. P., Morton, Cynthia C., Paré, Guillaume, Willemsen, Gonneke, Whiteman, David C., Olsen, Catherine M., Derom, Catherine, Vlietinck, Robert, Gudbjartsson, Daniel, Cannon-Albright, Lisa, Krapohl, Eva, Plomin, Robert ... Martin, Nicholas G. (2024). Genome-wide association study meta-analysis of dizygotic twinning illuminates genetic regulation of female fecundity. Human Reproduction, 39 (1), 240-257. doi: 10.1093/humrep/dead247
2024
Conference Publication
Dynamic transcriptomic changes in endometrial tissue and its association with endometriosis and related infertility
Yang, Fei, Qi, Ting, Mcrae, Allan F., Rogers, Peter A. W., Mortlock, Sally and Montgomery, Grant W. (2024). Dynamic transcriptomic changes in endometrial tissue and its association with endometriosis and related infertility. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow Scotland, Jun 10-13, 2023. LONDON: SPRINGERNATURE.
2023
Journal Article
Genomic analysis of lymphoma risk in Bullmastiff dogs
Mortlock, Sally A., Asada, Monica C., Soh, Pamela Xing Yi, Hsu, Wei-Tse, Lee, Carol, Bennett, Peter F., Taylor, Rosanne M., Khatkar, Mehar S. and Williamson, Peter (2023). Genomic analysis of lymphoma risk in Bullmastiff dogs. Veterinary Sciences, 10 (12) 703, 1-14. doi: 10.3390/vetsci10120703
2023
Journal Article
Polygenic risk score phenome-wide association study reveals an association between endometriosis and testosterone
McGrath, Isabelle M., Montgomery, Grant W., Mortlock, Sally and International Endometriosis Genetics Consortium (2023). Polygenic risk score phenome-wide association study reveals an association between endometriosis and testosterone. BMC Medicine, 21 (1) 482, 1-14. doi: 10.1186/s12916-023-03184-z
2023
Journal Article
Gene expression profiles separate endometriosis lesion subtypes and indicate a sensitivity of endometrioma to estrogen suppressive treatments through elevated ESR2 expression
Marla, Sushma, Mortlock, Sally, Heinosalo, Taija, Poutanen, Matti, Montgomery, Grant W. and McKinnon, Brett David (2023). Gene expression profiles separate endometriosis lesion subtypes and indicate a sensitivity of endometrioma to estrogen suppressive treatments through elevated ESR2 expression. BMC Medicine, 21 (1) 460, 1-15. doi: 10.1186/s12916-023-03166-1
2023
Journal Article
Associations between endometriosis and common symptoms: findings from the Australian Longitudinal Study on Women’s Health
Gete, Dereje G., Doust, Jenny, Mortlock, Sally, Montgomery, Grant and Mishra, Gita D. (2023). Associations between endometriosis and common symptoms: findings from the Australian Longitudinal Study on Women’s Health. American Journal of Obstetrics and Gynecology, 229 (5), 536.e1-536.e20. doi: 10.1016/j.ajog.2023.07.033
2023
Journal Article
A molecular staging model for accurately dating the endometrial biopsy
Teh, W. T., Chung, J., Holdsworth-Carson, S. J., Donoghue, J. F., Healey, M., Rees, H. C., Bittinger, S., Obers, V., Sloggett, C., Kendarsari, R., Fung, J. N., Mortlock, S., Montgomery, G. W., Girling, J. E. and Rogers, P. A. W. (2023). A molecular staging model for accurately dating the endometrial biopsy. Nature Communications, 14 (1) 6222, 6222. doi: 10.1038/s41467-023-41979-z
Funding
Current funding
Past funding
Supervision
Availability
- Dr Sally Mortlock is:
- Available for supervision
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Available projects
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Understanding Endometriosis Heterogeneity Across the Life Course
Endometriosis is a heterogeneous condition characterised by wide variation in symptoms, comorbidities, lesion types, and treatment response, contributing to delayed diagnosis and poor outcomes. This PhD project will investigate the genetic and life course drivers of this heterogeneity, examining how symptom profiles and comorbidities cluster and vary across women.
Using large-scale datasets including the Australian Longitudinal Study on Women’s Health (ALSWH) and international genomic resources, the project will characterise disease subtypes, assess causal links between endometriosis, symptoms and comorbidities, and explore how genetic risk interacts with life course exposures to shape symptom trajectories. Advanced methods including longitudinal and trajectory modelling and causal inference will be applied.
The project will generate new insights into endometriosis subtypes, underlying mechanisms, and gene–environment interactions, with the goal of improving early diagnosis and informing more personalised, targeted care pathways.
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Understanding Shared Mechanisms Across Reproductive and Menstrual Health
This project will apply genetic epidemiology and life course approaches to investigate the causes, overlap, and shared biological mechanisms underlying reproductive and menstrual disorders across women’s lives. Focusing on conditions including endometriosis, endometritis, infertility, polyendocrine metabolic ovarian syndrome (PMOS), fibroids, heavy menstrual bleeding, and related reproductive traits and milestones (e.g., age at menarche and menopause), the project will examine how co-occurring conditions interact and contribute to women’s health across the life course. Moving beyond a disease-centred approach, the research will adopt a person-centred framework to identify shared pathways and causal links between reproductive disorders, fertility outcomes, gynaecological cancers, and broader chronic disease risk. Using methods including Mendelian randomisation, polygenic risk modelling, and interaction analyses, the project will investigate how genetic susceptibility and life course exposures (e.g., BMI, contraceptive use, reproductive stage) influence disease risk, infertility, and condition overlap. Findings will support earlier identification of risk, targeted interventions, and improved women’s health outcomes.
Supervision history
Current supervision
-
Doctor Philosophy
Exploring the role of epidemiological and molecular factors in endometriosis risk
Principal Advisor
Other advisors: Professor Allan McRae
-
Doctor Philosophy
Leveraging multi-omic and epidemiological data to understand endometriosis and its symptomatology
Associate Advisor
Other advisors: Professor Naomi Wray, Professor Allan McRae
Completed supervision
-
2025
Doctor Philosophy
Leveraging Large Genomic and Health Record Datasets to Uncover Novel Insights into the Aetiology of Endometriosis
Principal Advisor
-
2024
Doctor Philosophy
Identifying genetic and epigenetic regulators of skin and hair follicle physiology and disease in mice: A systems-based approach using The Collaborative Cross
Associate Advisor
Other advisors: Professor Kiarash Khosrotehrani
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2023
Doctor Philosophy
Regulation of transcription in human endometrium and endometriosis
Associate Advisor
-
2023
Doctor Philosophy
Investigation of both epidemiological and genetic risk factors for endometriosis: novel insights and important clinical implications
Associate Advisor
Media
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