Overview
Background
Dr Sally Mortlock is a genetic epidemiologist and NECST Research Fellow who leads the Genetic Epidemiology stream at the Australian Women and Girls Health Research (AWaGHR) Centre, University of Queensland. Her research integrates genomics with life course epidemiology to understand how genetic, environmental, and lifestyle factors shape women’s health across the lifespan.
Her work focuses on reproductive and menstrual health, particularly endometriosis and related conditions, with the aim of improving understanding of disease mechanisms, risk, diagnosis, and personalised approaches to care.
Research areas include:
- Genetic epidemiology and reproductive genomics
- Women’s health across the life course
- Endometriosis and reproductive disorders
- Longitudinal cohort studies and life course epidemiology
- Genetic risk prediction and causal inference methods (including Mendelian randomisation)
- Multi-omics and biological pathway analysis
Dr Mortlock previously spent seven years as lead computational biologist within the Genomics of Reproduction Disorders group at the Institute for Molecular Bioscience, contributing to internationally recognised research in reproductive genomics. She now combines this expertise with large-scale longitudinal health data, including genetic resources within the Australian Longitudinal Study on Women’s Health, to investigate women’s health trajectories over time.
Availability
- Dr Sally Mortlock is:
- Available for supervision
Fields of research
Qualifications
- Doctor of Philosophy, University of Sydney
Research impacts
Dr Morltock’s research aims to improve understanding, diagnosis, and management of endometriosis and women’s reproductive health by translating genomic and epidemiological research into knowledge, clinical, policy, and public health outcomes.
Her work has helped identify genetic risk factors, shared disease pathways, and biological mechanisms underlying endometriosis and related conditions. These discoveries support efforts toward earlier diagnosis, improved disease classification, and development of more personalised approaches to care.
Research contributions include:
- Identifying genetic risk regions and shared mechanisms linking endometriosis with other diseases
- Developing genomic resources (including endometrial eQTL and mQTL datasets) that are now widely used internationally to interpret disease biology and identify therapeutic targets
- Generating evidence from large longitudinal cohorts, including the Australian Longitudinal Study on Women’s Health (ALSWH), to understand how genetic, environmental, and lifestyle factors influence women’s health across the life course
This research has informed national and international policy and guideline development. Findings have contributed evidence cited in the WHO report Endometriosis: disease mechanisms and health disparities (2023), the ACOG Guideline No. 425a, European policy initiatives on women’s reproductive health, and the RANZCOG Australian Living Evidence Guideline for Endometriosis.
Works
Search Professor Sally Mortlock’s works on UQ eSpace
2022
Journal Article
Protocol for the Endometriosis Research Queensland Study (ERQS): an integrated cohort study approach to improve diagnosis and stratify treatment
Tanaka, Keisuke, Gilroy, Deborah, Subramaniam, Sugarniya, Lakshmi, Preethi, Bhadravathi Lokeshappa, Madhura, Wallace, Leanne M., Atluri, Sharat, Schmidt, Bart, Ganter, Peter, Baartz, David, Smith, Matthew, Mortlock, Sally, Henders, Anjali, Khalil, Akram, Montgomery, Grant, McKinnon, Brett and Amoako, Akwasi (2022). Protocol for the Endometriosis Research Queensland Study (ERQS): an integrated cohort study approach to improve diagnosis and stratify treatment. BMJ Open, 12 (10) e064073, 1-10. doi: 10.1136/bmjopen-2022-064073
2022
Journal Article
Author correction: Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis
Gallagher, C. S., Mäkinen, N., Harris, H. R., Rahmioglu, N., Uimari, O., Cook, J. P., Shigesi, N., Ferreira, T., Velez-Edwards, D. R., Edwards, T. L., Mortlock, S., Ruhioglu, Z., Day, F., Becker, C. M., Karhunen, V., Martikainen, H., Järvelin, M.-R., Cantor, R. M., Ridker, P. M., Terry, K. L., Buring, J. E., Gordon, S. D., Medland, S. E., Montgomery, G. W., Nyholt, D. R., Hinds, D. A., Tung, J. Y., Agee, Michelle, Alipanahi, Babak ... the 23andMe Research Team (2022). Author correction: Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis. Nature Communications, 13 (1) 5543, 5543. doi: 10.1038/s41467-022-33222-y
2022
Journal Article
Altered differentiation of endometrial mesenchymal stromal fibroblasts is associated with endometriosis susceptibility
McKinnon, Brett D., Lukowski, Samuel W., Mortlock, Sally, Crawford, Joanna, Atluri, Sharat, Subramaniam, Sugarniya, Johnston, Rebecca L., Nirgianakis, Konstantinos, Tanaka, Keisuke, Amoako, Akwasi, Mueller, Michael D. and Montgomery, Grant W. (2022). Altered differentiation of endometrial mesenchymal stromal fibroblasts is associated with endometriosis susceptibility. Communications Biology, 5 (1) 600, 600. doi: 10.1038/s42003-022-03541-3
2022
Journal Article
Gene expression of the endocannabinoid system in endometrium through menstrual cycle
Tanaka, Keisuke, Amoako, Akwasi A., Mortlock, Sally, Rogers, Peter A. W., Holdsworth-Carson, Sarah J., Donoghue, Jacqueline F., Teh, Wan Tinn, Montgomery, Grant W. and McKinnon, Brett (2022). Gene expression of the endocannabinoid system in endometrium through menstrual cycle. Scientific Reports, 12 (1) 9400, 9400. doi: 10.1038/s41598-022-13488-4
2022
Journal Article
A multi-level investigation of the genetic relationship between endometriosis and ovarian cancer histotypes
Mortlock, Sally, Corona, Rosario I., Kho, Pik Fang, Pharoah, Paul, Seo, Ji-Heui, Freedman, Matthew L., Gayther, Simon A., Siedhoff, Matthew T., Rogers, Peter A.W., Leuchter, Ronald, Walsh, Christine S., Cass, Ilana, Karlan, Beth Y., Rimel, B.J., Montgomery, Grant W., Lawrenson, Kate and Kar, Siddhartha P. (2022). A multi-level investigation of the genetic relationship between endometriosis and ovarian cancer histotypes. Cell Reports Medicine, 3 (3) 100542, 100542. doi: 10.1016/j.xcrm.2022.100542
2022
Conference Publication
Comparison of Organoids from Menstrual Fluid and Endometrium from Women Taking Hormonal Medication: Potential for Modelling Endometriosis
Filby, Caitlin E., Wyatt, Katherine A., Mortlock, Sally, Cousins, Fiona L., McKinnon, Brett, Tyson, Kate, Montgomery, Grant W. and Gargett, Caroline E. (2022). Comparison of Organoids from Menstrual Fluid and Endometrium from Women Taking Hormonal Medication: Potential for Modelling Endometriosis. 69th Annual Meeting of the Society for Reproductive Investigation SRI 2022, Denver, CO United States, 15-19 March 2022. Heidelberg, Germany: Springer.
2021
Journal Article
Comparison of organoids from menstrual fluid and hormone-treated endometrium: novel tools for gynecological research
Filby, Caitlin E., Wyatt, Katherine A., Mortlock, Sally, Cousins, Fiona L., McKinnon, Brett, Tyson, Kate E., Montgomery, Grant W. and Gargett, Caroline E. (2021). Comparison of organoids from menstrual fluid and hormone-treated endometrium: novel tools for gynecological research. Journal of Personalized Medicine, 11 (12) 1314, 1314. doi: 10.3390/jpm11121314
2021
Journal Article
Genetic analyses of gynecological disease identify genetic relationships between uterine fibroids and endometrial cancer, and a novel endometrial cancer genetic risk region at the WNT4 1p36.12 locus
Kho, Pik Fang, Mortlock, Sally, Endometrial Cancer Association Consortium , International Endometriosis Genetics Consortium, Rogers, Peter A. W., Nyholt, Dale R., Montgomery, Grant W., Spurdle, Amanda B., Glubb, Dylan M. and O'Mara, Tracy A. (2021). Genetic analyses of gynecological disease identify genetic relationships between uterine fibroids and endometrial cancer, and a novel endometrial cancer genetic risk region at the WNT4 1p36.12 locus. Human Genetics, 140 (9), 1353-1365. doi: 10.1007/s00439-021-02312-0
2021
Journal Article
Genetic Relationship Between Endometriosis and Melanoma
Yang, Fei, Mortlock, Sally, MacGregor, Stuart, Iles, Mark M., Landi, Maria Teresa, Shi, Jianxin, Law, Matthew H., Montgomery, Grant W. and on behalf of The International Endometriosis Genetics Consortium (2021). Genetic Relationship Between Endometriosis and Melanoma. Frontiers in Reproductive Health, 3 711123, 1-10. doi: 10.3389/frph.2021.711123
2021
Journal Article
Genetic regulation of physiological reproductive lifespan and female fertility
McGrath, Isabelle M., Mortlock, Sally and Montgomery, Grant W. (2021). Genetic regulation of physiological reproductive lifespan and female fertility. International Journal of Molecular Sciences, 22 (5) 2556, 1-13. doi: 10.3390/ijms22052556
2021
Journal Article
Elucidating the role of long intergenic non-coding RNA 339 in human endometrium and endometriosis
Holdsworth-Carson, Sarah J., Churchill, Molly, Donoghue, Jacqueline F., Mortlock, Sally, Fung, Jenny N., Sloggett, Clare, Chung, Jessica, Cann, Leonie, Teh, Wan Tinn, Campbell, Katie-Rose, Luwor, Rodney, Healey, Martin, Montgomery, Grant, Girling, Jane E. and Rogers, Peter A. W. (2021). Elucidating the role of long intergenic non-coding RNA 339 in human endometrium and endometriosis. Molecular Human Reproduction, 27 (3) gaab010. doi: 10.1093/molehr/gaab010
2021
Journal Article
Genetic regulation of transcription in the endometrium in health and disease
Mortlock, Sally, McKinnon, Brett and Montgomery, Grant W. (2021). Genetic regulation of transcription in the endometrium in health and disease. Frontiers in Reproductive Health, 3 795464, 795464. doi: 10.3389/frph.2021.795464
2021
Journal Article
Genetic risk factors for endometriosis near estrogen receptor 1 and coexpression of genes in this region in endometrium
Marla, S., Mortlock, S., Houshdaran, S., Fung, J., McKinnon, B., Holdsworth-Carson, S. J., Girling, J. E., Rogers, P. A. W., Giudice, L. C. and Montgomery, G. W. (2021). Genetic risk factors for endometriosis near estrogen receptor 1 and coexpression of genes in this region in endometrium. Molecular Human Reproduction, 27 (1) gaaa082. doi: 10.1093/molehr/gaaa082
2020
Conference Publication
Using genetics to understand the relationship between non-cancerous gynaecological diseases and endometrial cancer risk
O'Mara, T. A., Kho, P., Mortlock, S., Montgomery, G. W., Spurdle, A. B. and Glubb, D. M. (2020). Using genetics to understand the relationship between non-cancerous gynaecological diseases and endometrial cancer risk. LONDON: SPRINGERNATURE.
2020
Journal Article
Author's reply
Montgomery, Grant W., Mortlock, Sally and Giudice, Linda C. (2020). Author's reply. Journal of Minimally Invasive Gynecology, 27 (6), 1427. doi: 10.1016/j.jmig.2020.04.021
2020
Conference Publication
Genetic Relationship Between Endometriosis and Ovarian Cancer Subtypes
Mortlock, Sally, Lawrenson, Kate, Gayther, Simon, Macgregor, Stuart, Pharoah, Paul, Montgomery, Grant and Kar, Siddhartha (2020). Genetic Relationship Between Endometriosis and Ovarian Cancer Subtypes. 67th Annual Scientific Meeting of the Society-for-Reproductive-Investigation (SRI), Vancouver, Canada, 10-14 March 2020. Heidelberg, Germany: Springer.
2020
Journal Article
Tissue specific regulation of transcription in endometrium and association with disease
Mortlock, Sally, Kendarsari, Raden I., Fung, Jenny N., Gibson, Greg, Yang, Fei, Restuadi, Restuadi, Girling, Jane E., Holdsworth-Carson, Sarah J., Teh, Wan Tinn, Lukowski, Samuel W., Healey, Martin, Qi, Ting, Rogers, Peter A. W., Yang, Jian, McKinnon, Brett and Montgomery, Grant W. (2020). Tissue specific regulation of transcription in endometrium and association with disease. Human Reproduction, 35 (2), 377-393. doi: 10.1093/humrep/dez279
2020
Journal Article
The role of the endocannabinoid system in aetiopathogenesis of endometriosis: a potential therapeutic target
Tanaka, Keisuke, Mayne, Leah, Khalil, Akram, Baartz, David, Eriksson, Lars, Mortlock, Sally-Anne, Montgomery, Grant, McKinnon, Brett and Amoako, Akwasi A. (2020). The role of the endocannabinoid system in aetiopathogenesis of endometriosis: a potential therapeutic target. European Journal of Obstetrics and Gynecology and Reproductive Biology, 244, 87-94. doi: 10.1016/j.ejogrb.2019.11.012
2020
Journal Article
Obesity does not alter endometrial gene expression in women with endometriosis
Holdsworth-Carson, Sarah J, Chung, Jessica, Sloggett, Clare, Mortlock, Sally, Fung, Jenny N., Montgomery, Grant W., Dior, Uri P., Healey, Martin, Rogers, Peter A.W. and Girling, Jane E. (2020). Obesity does not alter endometrial gene expression in women with endometriosis. Reproductive BioMedicine Online, 41 (1), 113-118. doi: 10.1016/j.rbmo.2020.03.015
2019
Journal Article
Genotype-free demultiplexing of pooled single-cell RNA-seq
Xu, Jun, Falconer, Caitlin, Nguyen, Quan, Crawford, Joanna, McKinnon, Brett D., Mortlock, Sally, Senabouth, Anne, Andersen, Stacey, Chiu, Han Sheng, Jiang, Longda, Palpant, Nathan J., Yang, Jian, Mueller, Michael D., Hewitt, Alex W., Pébay, Alice, Montgomery, Grant W., Powell, Joseph E. and Coin, Lachlan J. M. (2019). Genotype-free demultiplexing of pooled single-cell RNA-seq. Genome Biology, 20 (1) 290, 290. doi: 10.1186/s13059-019-1852-7
Funding
Current funding
Past funding
Supervision
Availability
- Dr Sally Mortlock is:
- Available for supervision
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Available projects
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Understanding Endometriosis Heterogeneity Across the Life Course
Endometriosis is a heterogeneous condition characterised by wide variation in symptoms, comorbidities, lesion types, and treatment response, contributing to delayed diagnosis and poor outcomes. This PhD project will investigate the genetic and life course drivers of this heterogeneity, examining how symptom profiles and comorbidities cluster and vary across women.
Using large-scale datasets including the Australian Longitudinal Study on Women’s Health (ALSWH) and international genomic resources, the project will characterise disease subtypes, assess causal links between endometriosis, symptoms and comorbidities, and explore how genetic risk interacts with life course exposures to shape symptom trajectories. Advanced methods including longitudinal and trajectory modelling and causal inference will be applied.
The project will generate new insights into endometriosis subtypes, underlying mechanisms, and gene–environment interactions, with the goal of improving early diagnosis and informing more personalised, targeted care pathways.
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Understanding Shared Mechanisms Across Reproductive and Menstrual Health
This project will apply genetic epidemiology and life course approaches to investigate the causes, overlap, and shared biological mechanisms underlying reproductive and menstrual disorders across women’s lives. Focusing on conditions including endometriosis, endometritis, infertility, polyendocrine metabolic ovarian syndrome (PMOS), fibroids, heavy menstrual bleeding, and related reproductive traits and milestones (e.g., age at menarche and menopause), the project will examine how co-occurring conditions interact and contribute to women’s health across the life course. Moving beyond a disease-centred approach, the research will adopt a person-centred framework to identify shared pathways and causal links between reproductive disorders, fertility outcomes, gynaecological cancers, and broader chronic disease risk. Using methods including Mendelian randomisation, polygenic risk modelling, and interaction analyses, the project will investigate how genetic susceptibility and life course exposures (e.g., BMI, contraceptive use, reproductive stage) influence disease risk, infertility, and condition overlap. Findings will support earlier identification of risk, targeted interventions, and improved women’s health outcomes.
Supervision history
Current supervision
-
Doctor Philosophy
Exploring the role of epidemiological and molecular factors in endometriosis risk
Principal Advisor
Other advisors: Professor Allan McRae
-
Doctor Philosophy
Leveraging multi-omic and epidemiological data to understand endometriosis and its symptomatology
Associate Advisor
Other advisors: Professor Naomi Wray, Professor Allan McRae
Completed supervision
-
2025
Doctor Philosophy
Leveraging Large Genomic and Health Record Datasets to Uncover Novel Insights into the Aetiology of Endometriosis
Principal Advisor
-
2024
Doctor Philosophy
Identifying genetic and epigenetic regulators of skin and hair follicle physiology and disease in mice: A systems-based approach using The Collaborative Cross
Associate Advisor
Other advisors: Professor Kiarash Khosrotehrani
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2023
Doctor Philosophy
Regulation of transcription in human endometrium and endometriosis
Associate Advisor
-
2023
Doctor Philosophy
Investigation of both epidemiological and genetic risk factors for endometriosis: novel insights and important clinical implications
Associate Advisor
Media
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