Skip to menu Skip to content Skip to footer
Dr Sally Mortlock
Dr

Sally Mortlock

Email: 

Overview

Background

Dr Sally Mortlock is a genetic epidemiologist and NECST Research Fellow who leads the Genetic Epidemiology stream at the Australian Women and Girls Health Research (AWaGHR) Centre, University of Queensland. Her research integrates genomics with life course epidemiology to understand how genetic, environmental, and lifestyle factors shape women’s health across the lifespan.

Her work focuses on reproductive and menstrual health, particularly endometriosis and related conditions, with the aim of improving understanding of disease mechanisms, risk, diagnosis, and personalised approaches to care.

Research areas include:

  • Genetic epidemiology and reproductive genomics
  • Women’s health across the life course
  • Endometriosis and reproductive disorders
  • Longitudinal cohort studies and life course epidemiology
  • Genetic risk prediction and causal inference methods (including Mendelian randomisation)
  • Multi-omics and biological pathway analysis

Dr Mortlock previously spent seven years as lead computational biologist within the Genomics of Reproduction Disorders group at the Institute for Molecular Bioscience, contributing to internationally recognised research in reproductive genomics. She now combines this expertise with large-scale longitudinal health data, including genetic resources within the Australian Longitudinal Study on Women’s Health, to investigate women’s health trajectories over time.

Availability

Dr Sally Mortlock is:
Available for supervision

Qualifications

  • Doctor of Philosophy, University of Sydney

Research impacts

Dr Morltock’s research aims to improve understanding, diagnosis, and management of endometriosis and women’s reproductive health by translating genomic and epidemiological research into knowledge, clinical, policy, and public health outcomes.

Her work has helped identify genetic risk factors, shared disease pathways, and biological mechanisms underlying endometriosis and related conditions. These discoveries support efforts toward earlier diagnosis, improved disease classification, and development of more personalised approaches to care.

Research contributions include:

  • Identifying genetic risk regions and shared mechanisms linking endometriosis with other diseases
  • Developing genomic resources (including endometrial eQTL and mQTL datasets) that are now widely used internationally to interpret disease biology and identify therapeutic targets
  • Generating evidence from large longitudinal cohorts, including the Australian Longitudinal Study on Women’s Health (ALSWH), to understand how genetic, environmental, and lifestyle factors influence women’s health across the life course

This research has informed national and international policy and guideline development. Findings have contributed evidence cited in the WHO report Endometriosis: disease mechanisms and health disparities (2023), the ACOG Guideline No. 425a, European policy initiatives on women’s reproductive health, and the RANZCOG Australian Living Evidence Guideline for Endometriosis.

Works

Search Professor Sally Mortlock’s works on UQ eSpace

74 works between 2015 and 2026

61 - 74 of 74 works

2019

Journal Article

Should genetics now be considered the pre-eminent etiologic factor in endometriosis?

Montgomery, Grant W., Mortlock, Sally and Giudice, Linda C. (2019). Should genetics now be considered the pre-eminent etiologic factor in endometriosis?. Journal of Minimally Invasive Gynecology, 27 (2), 280-286. doi: 10.1016/j.jmig.2019.10.020

Should genetics now be considered the pre-eminent etiologic factor in endometriosis?

2019

Journal Article

Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis

Gallagher, C. S., Mäkinen, N., Harris, H. R., Rahmioglu, N., Uimari, O., Cook, J. P., Shigesi, N., Ferreira, T., Velez-Edwards, D. R., Edwards, T. L., Mortlock, S., Ruhioglu, Z., Day, F., Becker, C. M., Karhunen, V., Martikainen, H., Järvelin, M.-R., Cantor, R. M., Ridker, P. M., Terry, K. L., Buring, J. E., Gordon, S. D., Medland, S. E., Montgomery, G. W., Nyholt, D. R., Hinds, D. A., Tung, J. Y., Perry, J. R. B., Lind, P. A. ... Morton, C. C. (2019). Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis. Nature Communications, 10 (1) 4857, 4857. doi: 10.1038/s41467-019-12536-4

Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis

2019

Journal Article

Genome-wide association studies of 74 plasma metabolites of German shepherd dogs reveal two metabolites associated with genes encoding their enzymes

Soh, Pamela Xing Yi, Marin Cely, Juliana Maria, Mortlock, Sally-Anne, Jara, Christopher James, Booth, Rachel, Natera, Siria, Roessner, Ute, Crossett, Ben, Cordwell, Stuart, Singh Khatkar, Mehar and Williamson, Peter (2019). Genome-wide association studies of 74 plasma metabolites of German shepherd dogs reveal two metabolites associated with genes encoding their enzymes. Metabolomics, 15 (9) 123, 123. doi: 10.1007/s11306-019-1586-2

Genome-wide association studies of 74 plasma metabolites of German shepherd dogs reveal two metabolites associated with genes encoding their enzymes

2019

Journal Article

Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases

Mortlock, Sally, Restuadi, Restuadi, Levien, Rupert, Girling, Jane E., Holdsworth-Carson, Sarah J., Healey, Martin, Zhu, Zhihong, Qi, Ting, Wu, Yang, Lukowski, Samuel W., Rogers, Peter A. W., Yang, Jian, McRae, Allan F., Fung, Jenny N. and Montgomery, Grant W. (2019). Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases. Clinical Epigenetics, 11 (1) 49, 49. doi: 10.1186/s13148-019-0648-7

Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases

2019

Journal Article

Copy number variation and variant discovery in Bullmastiff dogs

Mortlock, S.-A., Williamson, P. and Khatkar, M. S. (2019). Copy number variation and variant discovery in Bullmastiff dogs. Animal Genetics, 50 (2) age.12754, 177-181. doi: 10.1111/age.12754

Copy number variation and variant discovery in Bullmastiff dogs

2019

Journal Article

Generation of immortalized human endometrial stromal cell lines with different endometriosis risk genotypes

Holdsworth-Carson, S. J., Colgrave, E. M., Donoghue, J. F., Fung, J. N., Churchill, M. L., Mortlock, S., Paiva, P., Healey, M., Montgomery, G. W., Girling, J. E. and Rogers, P. A. W. (2019). Generation of immortalized human endometrial stromal cell lines with different endometriosis risk genotypes. MHR: Basic science of reproductive medicine, 25 (4), 194-205. doi: 10.1093/molehr/gaz006

Generation of immortalized human endometrial stromal cell lines with different endometriosis risk genotypes

2019

Conference Publication

Identifying Target Genes for Endometriosis through Integration of Genetic Effects on Transcription and Methylation in Human Endometrium

Mortlock, Sally, Fung, Jenny N., Girling, Jane E., Holdsworth-Carson, Sarah J., Healey, Martin, Lukowski, Samuel W., McKinnon, Brett D., Yang, Jian, McRae, Allan, Rogers, Peter A. W. and Montgomery, Grant W. (2019). Identifying Target Genes for Endometriosis through Integration of Genetic Effects on Transcription and Methylation in Human Endometrium. 66th Annual Scientific Meeting of the Society for Reproductive Investigation (SRI), Paris, France, 12-16 March 2019. Thousand Oaks, CA, United States: Sage.

Identifying Target Genes for Endometriosis through Integration of Genetic Effects on Transcription and Methylation in Human Endometrium

2018

Journal Article

Genetic regulation of disease risk and endometrial gene expression highlights potential target genes for endometriosis and polycystic ovarian syndrome

Fung, Jenny N., Mortlock, Sally, Girling, Jane E., Holdsworth-Carson, Sarah J., Teh, Wan Tinn, Zhu, Zhihong, Lukowski, Samuel W., McKinnon, Brett D., McRae, Allan, Yang, Jian, Healey, Martin, Powell, Joseph E., Rogers, Peter A. W. and Montgomery, Grant W (2018). Genetic regulation of disease risk and endometrial gene expression highlights potential target genes for endometriosis and polycystic ovarian syndrome. Scientific Reports, 8 (1) 11424, 11424. doi: 10.1038/s41598-018-29462-y

Genetic regulation of disease risk and endometrial gene expression highlights potential target genes for endometriosis and polycystic ovarian syndrome

2018

Journal Article

Genetic Variation at Chromosome 2q13 and Its Potential Influence on Endometriosis Susceptibility Through Effects on the IL-1 Family

Gajbhiye, Rahul, McKinnon, Brett, Mortlock, Sally, Mueller, Michael and Montgomery, Grant (2018). Genetic Variation at Chromosome 2q13 and Its Potential Influence on Endometriosis Susceptibility Through Effects on the IL-1 Family. Reproductive Sciences, 25 (9), 1933719118768688-1317. doi: 10.1177/1933719118768688

Genetic Variation at Chromosome 2q13 and Its Potential Influence on Endometriosis Susceptibility Through Effects on the IL-1 Family

2018

Conference Publication

Dynamic changes in gene regulation in human endometrium

Fung, Jenny N., Mortlock, Sally, Girling, Jane E., Holdsworth-Carson, Sarah J., Teh, Wan Tinn, Healey, Martin, Rogers, Peter A. W. and Montgomery, Grant W. (2018). Dynamic changes in gene regulation in human endometrium. 65th Annual Scientific Meeting of the Society for Reproductive Investigation (SRI), San Diego CA, United States, 6-10 March 2018. Thousand Oaks, CA United States: Sage Publications.

Dynamic changes in gene regulation in human endometrium

2016

Journal Article

Visualization of genome diversity in german shepherd dogs

Mortlock, Sally-Anne, Booth, Rachel, Mazrier, Hamutal, Khatkar, Mehar S. and Williamson, Peter (2016). Visualization of genome diversity in german shepherd dogs. Bioinformatics and Biology Insights, 9, 37-42. doi: 10.4137/BBI.S30524

Visualization of genome diversity in german shepherd dogs

2016

Journal Article

Comparative analysis of genome diversity in bullmastiff dogs

Mortlock, Sally-Anne, Khatkar, Mehar S. and Williamson, Peter (2016). Comparative analysis of genome diversity in bullmastiff dogs. PLoS One, 11 (1) e0147941, e0147941. doi: 10.1371/journal.pone.0147941

Comparative analysis of genome diversity in bullmastiff dogs

2015

Journal Article

T-cell activation and early gene response in dogs

Mortlock, Sally-Anne, Wei, Jerry and Williamson, Peter (2015). T-cell activation and early gene response in dogs. PLoS One, 10 (3) e0121169, e0121169. doi: 10.1371/journal.pone.0121169

T-cell activation and early gene response in dogs

2015

Journal Article

Cluster Analysis of Tumor Suppressor Genes in Canine Leukocytes Identifies Activation State

Daly, Julie-Anne, Mortlock, Sally-Anne, Taylor, Rosanne M. and Williamson, Peter (2015). Cluster Analysis of Tumor Suppressor Genes in Canine Leukocytes Identifies Activation State. Bioinformatics and Biology Insights, 9 (S2), 59-67. doi: 10.4137/BBI.S30523

Cluster Analysis of Tumor Suppressor Genes in Canine Leukocytes Identifies Activation State

Funding

Current funding

  • 2026 - 2028
    Understanding mechanisms and optimising health after early menopause (Externally Led MRFF IPLM by University of Melbourne)
    University of Melbourne
    Open grant
  • 2026 - 2030
    Australian Perimenopause and Menopause (A-PaM) Study
    NHMRC MRFF Infertility Pregnancy Loss and Menopause
    Open grant
  • 2025 - 2026
    Designing an Australian National Adaptive Platform Trial for Endometriosis
    MRFF Innovative Trials
    Open grant
  • 2025 - 2027
    Characterising endometriosis heterogeneity to improve diagnosis and disease management. (NECST Postdoctoral Fellowship via UNSW)
    National Endometriosis Clinical and Scientific Trials Network PhD and Post-Doctoral Fellowships
    Open grant
  • 2024 - 2028
    Hormonal influences on inflammation in endometriosis (NIH project administered by University of Texas Health Science Center at San Antonio)
    The University of Texas Health Science Center at San Antonio
    Open grant

Past funding

  • 2024 - 2026
    Genotyping participants in the GELLES study
    Queensland Department of Health
    Open grant
  • 2022 - 2023
    Environmental Risk Factors for Endometriosis
    Endometriosis Australia Ltd
    Open grant
  • 2020 - 2025
    Genetic variants, Early Life exposures, and Longitudinal Endometriosis Symptoms study (GELLES)
    NHMRC MRFF EPCDR - Endometriosis Research
    Open grant
  • 2019 - 2023
    Causes of Endometriosis
    Research Donation Generic
    Open grant

Supervision

Availability

Dr Sally Mortlock is:
Available for supervision

Looking for a supervisor? Read our advice on how to choose a supervisor.

Available projects

  • Understanding Endometriosis Heterogeneity Across the Life Course

    Endometriosis is a heterogeneous condition characterised by wide variation in symptoms, comorbidities, lesion types, and treatment response, contributing to delayed diagnosis and poor outcomes. This PhD project will investigate the genetic and life course drivers of this heterogeneity, examining how symptom profiles and comorbidities cluster and vary across women.

    Using large-scale datasets including the Australian Longitudinal Study on Women’s Health (ALSWH) and international genomic resources, the project will characterise disease subtypes, assess causal links between endometriosis, symptoms and comorbidities, and explore how genetic risk interacts with life course exposures to shape symptom trajectories. Advanced methods including longitudinal and trajectory modelling and causal inference will be applied.

    The project will generate new insights into endometriosis subtypes, underlying mechanisms, and gene–environment interactions, with the goal of improving early diagnosis and informing more personalised, targeted care pathways.

  • Understanding Shared Mechanisms Across Reproductive and Menstrual Health

    This project will apply genetic epidemiology and life course approaches to investigate the causes, overlap, and shared biological mechanisms underlying reproductive and menstrual disorders across women’s lives. Focusing on conditions including endometriosis, endometritis, infertility, polyendocrine metabolic ovarian syndrome (PMOS), fibroids, heavy menstrual bleeding, and related reproductive traits and milestones (e.g., age at menarche and menopause), the project will examine how co-occurring conditions interact and contribute to women’s health across the life course. Moving beyond a disease-centred approach, the research will adopt a person-centred framework to identify shared pathways and causal links between reproductive disorders, fertility outcomes, gynaecological cancers, and broader chronic disease risk. Using methods including Mendelian randomisation, polygenic risk modelling, and interaction analyses, the project will investigate how genetic susceptibility and life course exposures (e.g., BMI, contraceptive use, reproductive stage) influence disease risk, infertility, and condition overlap. Findings will support earlier identification of risk, targeted interventions, and improved women’s health outcomes.

Supervision history

Current supervision

  • Doctor Philosophy

    Exploring the role of epidemiological and molecular factors in endometriosis risk

    Principal Advisor

    Other advisors: Professor Allan McRae

  • Doctor Philosophy

    Leveraging multi-omic and epidemiological data to understand endometriosis and its symptomatology

    Associate Advisor

    Other advisors: Professor Naomi Wray, Professor Allan McRae

Completed supervision

Media

Enquiries

For media enquiries about Dr Sally Mortlock's areas of expertise, story ideas and help finding experts, contact our Media team:

communications@uq.edu.au