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2023 Journal Article Imputation strategies for genomic prediction using nanopore sequencingLamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0 |
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2023 Journal Article Developing flexible models for genetic evaluations in smallholder crossbred dairy farmsCostilla, R., Zeng, J., Al Kalaldeh, M., Swaminathan, M., Gibson, J.P., Ducrocq, V. and Hayes, B.J. (2023). Developing flexible models for genetic evaluations in smallholder crossbred dairy farms. Journal of Dairy Science, 106 (12), 9125-9135. doi: 10.3168/jds.2022-23135 |
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2023 Journal Article Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategiesYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2023). Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies. Frontiers in Plant Science, 14 1260517, 1260517. doi: 10.3389/fpls.2023.1260517 |
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2023 Journal Article Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is availableHayes, Ben J., Copley, James, Dodd, Elsie, Ross, Elizabeth M., Speight, Shannon and Fordyce, Geoffry (2023). Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is available. Genetics Selection Evolution, 55 (1) 71, 1-13. doi: 10.1186/s12711-023-00847-6 |
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2023 Journal Article Concurrently mapping quantitative trait loci associations from multiple subspecies within hybrid populationsWarburton, Christie L., Costilla, Roy, Engle, Bailey N., Moore, Stephen S., Corbet, Nicholas J., Fordyce, Geoffry, McGowan, Michael R., Burns, Brian M. and Hayes, Ben J. (2023). Concurrently mapping quantitative trait loci associations from multiple subspecies within hybrid populations. Heredity, 131 (5-6), 350-360. doi: 10.1038/s41437-023-00651-4 |
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2023 Journal Article Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traitsChen, Chensong, Powell, Owen, Dinglasan, Eric, Ross, Elizabeth M., Yadav, Seema, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben J. (2023). Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traits. The Plant Genome, 16 (4) e20390, 1-13. doi: 10.1002/tpg2.20390 |
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2023 Journal Article Advancing artificial intelligence to help feed the worldHayes, Ben J., Chen, Chensong, Powell, Owen, Dinglasan, Eric, Villiers, Kira, Kemper, Kathryn E. and Hickey, Lee T. (2023). Advancing artificial intelligence to help feed the world. Nature Biotechnology, 41 (9), 1-2. doi: 10.1038/s41587-023-01898-2 |
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2023 Journal Article Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattleLamb, H. J., Nguyen, L. T., Briody, T. E., Ambrose, R. K., Hayes, B. J., Mahony, T. J. and Ross, E. M. (2023). Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattle. Animal Production Science, 63 (11), 1074-1085. doi: 10.1071/an22451 |
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2023 Journal Article Predicting phenotypes of beef eating quality traitsForutan, Mehrnush, Lynn, Andrew, Aliloo, Hassan, Clark, Samuel A., McGilchrist, Peter, Polkinghorne, Rod and Hayes, Ben J. (2023). Predicting phenotypes of beef eating quality traits. Frontiers in Genetics, 14 1089490, 1089490. doi: 10.3389/fgene.2023.1089490 |
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2023 Journal Article In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variantsNguyen, Tuan V., Vander Jagt, Christy J., Wang, Jianghui, Daetwyler, Hans D., Xiang, Ruidong, Goddard, Michael E., Nguyen, Loan T., Ross, Elizabeth M, Hayes, Ben J., Chamberlain, Amanda J. and MacLeod, Iona M. (2023). In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants. Genetics Selection Evolution, 55 (1) 9, 1-15. doi: 10.1186/s12711-023-00783-5 |
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2023 Journal Article Multi-breed genomic predictions and functional variants for fertility of tropical bullsPorto-Neto, Laercio R., Alexandre, Pamela A., Hudson, Nicholas J., Bertram, John, McWilliam, Sean M., Tan, Andre W. L., Fortes, Marina R. S., McGowan, Michael R., Hayes, Ben J. and Reverter, Antonio (2023). Multi-breed genomic predictions and functional variants for fertility of tropical bulls. PLoS One, 18 (1) e0279398, 1-19. doi: 10.1371/journal.pone.0279398 |
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2023 Journal Article Orbivirus RNA in a banana serotine (Afronycteris nanus) bat in the Republic of the CongoCameron, Kenneth N., Mombouli, Jean-Vivien, Niama, Fabien R., Hayes, Ben, Olson, Sarah H., Smith, Brett R., Pante, Jasmine, Roy, Sanjit, Laudisoit, Anne, Goldstein, Tracey, Joly, Damien O., Bagamboula MPassi, Romain and Lange, Christian E. (2023). Orbivirus RNA in a banana serotine (Afronycteris nanus) bat in the Republic of the Congo. Ecohealth, 19 (4), 443-449. doi: 10.1007/s10393-022-01619-2 |
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2022 Journal Article Genomic mate-allocation strategies exploiting additive and non-additive genetic effects to maximise total clonal performance in sugarcaneYadav, Seema, Ross, Elizabeth, Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2022). Genomic mate-allocation strategies exploiting additive and non-additive genetic effects to maximise total clonal performance in sugarcane. |
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2022 Journal Article Identification of genomic variants causing variation in quantitative traits: a reviewMeuwissen, Theo, Hayes, Ben, MacLeod, Iona and Goddard, Michael (2022). Identification of genomic variants causing variation in quantitative traits: a review. Agriculture, 12 (10) 1713, 1-11. doi: 10.3390/agriculture12101713 |
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2022 Journal Article Correlation scan: identifying genomic regions that affect genetic correlations applied to fertility traitsOlasege, Babatunde S., Porto-Neto, Laercio R., Tahir, Muhammad S., Gouveia, Gabriela C., Cánovas, Angela, Hayes, Ben J. and Fortes, Marina R. S. (2022). Correlation scan: identifying genomic regions that affect genetic correlations applied to fertility traits. BMC Genomics, 23 (1) 684, 1-20. doi: 10.1186/s12864-022-08898-7 |
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2022 Journal Article genomicSimulation: fast R functions for stochastic simulation of breeding programsVilliers, Kira, Dinglasan, Eric, Hayes, Ben J and Voss-Fels, Kai P (2022). genomicSimulation: fast R functions for stochastic simulation of breeding programs. G3 Genes|Genomes|Genetics, 12 (10) jkac216, 1-6. doi: 10.1093/g3journal/jkac216 |
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2022 Journal Article Application of infrared thermal technology to assess the level of heat stress and milk yield reduction of cows in tropical smallholder dairy farmsBang, Nguyen N., Gaughan, John B., Hayes, Ben J., Lyons, Russell E. and McNeill, David M. (2022). Application of infrared thermal technology to assess the level of heat stress and milk yield reduction of cows in tropical smallholder dairy farms. Journal of Dairy Science, 105 (10), 8454-8469. doi: 10.3168/jds.2021-21343 |
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2022 Journal Article Multivariate analysis identifying the main factors associated with cow productivity and welfare in tropical smallholder dairy farms in VietnamBang, Nguyen N., Chanh, Nguyen V., Trach, Nguyen X., Khang, Duong N., Hayes, Ben J., Gaughan, John B., Lyons, Russell E. and McNeill, David M. (2022). Multivariate analysis identifying the main factors associated with cow productivity and welfare in tropical smallholder dairy farms in Vietnam. Tropical Animal Health and Production, 54 (5) 313, 313. doi: 10.1007/s11250-022-03303-7 |
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2022 Journal Article Promoting sustainable utilization and genetic improvement of Indonesian local beef cattle breeds: a reviewWidyas, Nuzul, Widi, Tri Satya Mastuti, Prastowo, Sigit, Sumantri, Ika, Hayes, Ben J. and Burrow, Heather M. (2022). Promoting sustainable utilization and genetic improvement of Indonesian local beef cattle breeds: a review. Agriculture, 12 (10) 1566, 1566. doi: 10.3390/agriculture12101566 |
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2022 Journal Article Adaptive sampling during sequencing reveals the origins of the bovine reproductive tract microbiome across reproductive stages and sexesOng, Chian Teng, Ross, Elizabeth M., Boe-Hansen, Gry, Turni, Conny, Hayes, Ben J., Fordyce, Geoffry and Tabor, Ala E. (2022). Adaptive sampling during sequencing reveals the origins of the bovine reproductive tract microbiome across reproductive stages and sexes. Scientific reports, 12 (1) 15075, 1-12. doi: 10.1038/s41598-022-19022-w |
