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2021 Journal Article Multiple country and breed genomic prediction of tick resistance in beef cattleCardoso, Fernando Flores, Matika, Oswald, Djikeng, Appolinaire, Mapholi, Ntanganedzeni, Burrow, Heather M., Yokoo, Marcos Jun Iti, Campos, Gabriel Soares, Gulias-Gomes, Claudia Cristina, Riggio, Valentina, Pong-Wong, Ricardo, Engle, Bailey, Porto-Neto, Laercio, Maiwashe, Azwihangwisi and Hayes, Ben J. (2021). Multiple country and breed genomic prediction of tick resistance in beef cattle. Frontiers in Immunology, 12 620847, 1-11. doi: 10.3389/fimmu.2021.620847 |
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2021 Journal Article Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic reviewOng, Chian Teng, Turni, Conny, Blackall, Patrick J., Boe-Hansen, Gry, Hayes, Ben J. and Tabor, Ala E. (2021). Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic review. Animal Microbiome, 3 (1) 41, 41. doi: 10.1186/s42523-021-00106-3 |
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2021 Journal Article Genomic selection and genetic gain for nut yield in an Australian macadamia breeding populationO’Connor, Katie M., Hayes, Ben J., Hardner, Craig M., Alam, Mobashwer, Henry, Robert J. and Topp, Bruce L. (2021). Genomic selection and genetic gain for nut yield in an Australian macadamia breeding population. BMC Genomics, 22 (1) 370, 1-12. doi: 10.1186/s12864-021-07694-z |
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2021 Journal Article Analysis of polycerate mutants reveals the evolutionary co-option of HOXD1 for horn patterning in BovidaeAllais-Bonnet, Aurélie, Hintermann, Aurélie, Deloche, Marie-Christine, Cornette, Raphaël, Bardou, Philippe, Naval-Sanchez, Marina, Pinton, Alain, Haruda, Ashleigh, Grohs, Cécile, Zakany, Jozsef, Bigi, Daniele, Medugorac, Ivica, Putelat, Olivier, Greyvenstein, Ockert, Hadfield, Tracy, Jemaa, Slim Ben, Bunevski, Gjoko, Menzi, Fiona, Hirter, Nathalie, Paris, Julia M., Hedges, John, Palhiere, Isabelle, Rupp, Rachel, Lenstra, Johannes A., Gidney, Louisa, Lesur, Joséphine, Schafberg, Renate, Stache, Michael, Wandhammer, Marie-Dominique ... Capitan, Aurélien (2021). Analysis of polycerate mutants reveals the evolutionary co-option of HOXD1 for horn patterning in Bovidae. Molecular Biology and Evolution, 38 (6), 2260-2272. doi: 10.1093/molbev/msab021 |
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2021 Journal Article Variants at the ASIP locus contribute to coat color darkening in Nellore cattleTrigo, Beatriz B., Utsunomiya, Adam T. H., Fortunato, Alvaro A. A. D., Milanesi, Marco, Torrecilha, Rafaela B. P., Lamb, Harrison, Nguyen, Loan, Ross, Elizabeth M., Hayes, Ben, Padula, Romulo C. M., Sussai, Thayla S., Zavarez, Ludmilla B., Cipriano, Rafael S., Caminhas, Maria M. T., Lopes, Flavia L., Pelle, Cassiano, Leeb, Tosso, Bannasch, Danika, Bickhart, Derek, Smith, Timothy P. L., Sonstegard, Tad S., Garcia, Jose F. and Utsunomiya, Yuri T. (2021). Variants at the ASIP locus contribute to coat color darkening in Nellore cattle. Genetics Selection Evolution, 53 (1) 40, 40. doi: 10.1186/s12711-021-00633-2 |
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2021 Journal Article Improved genomic prediction of clonal performance in sugarcane by exploiting non-additive genetic effectsYadav, Seema, Wei, Xianming, Joyce, Priya, Atkin, Felicity, Deomano, Emily, Sun, Yue, Nguyen, Loan T., Ross, Elizabeth M., Cavallaro, Tony, Aitken, Karen S., Hayes, Ben J. and Voss-Fels, Kai P. (2021). Improved genomic prediction of clonal performance in sugarcane by exploiting non-additive genetic effects. Theoretical and Applied Genetics, 134 (7), 2235-2252. doi: 10.1007/s00122-021-03822-1 |
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2021 Journal Article Comparison of genetic merit for weight and meat traits between the polled and horned cattle in multiple beef breedsRandhawa, Imtiaz A. S., McGowan, Michael R., Porto-Neto, Laercio R., Hayes, Ben J. and Lyons, Russell E. (2021). Comparison of genetic merit for weight and meat traits between the polled and horned cattle in multiple beef breeds. Animals, 11 (3) 870, 1-21. doi: 10.3390/ani11030870 |
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2021 Journal Article Imputation accuracy to whole-genome sequence in Nellore cattleFernandes Junior, Gerardo A., Carvalheiro, Roberto, de Oliveira, Henrique N., Sargolzaei, Mehdi, Costilla, Roy, Ventura, Ricardo V., Fonseca, Larissa F. S., Neves, Haroldo H. R., Hayes, Ben J. and de Albuquerque, Lucia G. (2021). Imputation accuracy to whole-genome sequence in Nellore cattle. Genetics Selection Evolution, 53 (1) 27. doi: 10.1186/s12711-021-00622-5 |
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2021 Journal Article Issues of feeding strategy for lactating cows in Vietnamese smallholder dairy farmsBang, Nguyen N., Chanh, Nguyen V., Trach, Nguyen X., Khang, Duong N., Hayes, Ben J., Gaughan, John B., Lyons, Russell E., Hai, Nguyen T. and McNeill, David M. (2021). Issues of feeding strategy for lactating cows in Vietnamese smallholder dairy farms. Animals, 11 (3) 729, 1-25. doi: 10.3390/ani11030729 |
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2021 Journal Article Assessment of performance and some welfare indicators of cows in Vietnamese smallholder dairy farmsBang, Nguyen N., Chanh, Nguyen V., Trach, Nguyen X., Khang, Duong N., Hayes, Ben J., Gaughan, John B., Lyons, Russell E., Hai, Nguyen T. and McNeill, David M. (2021). Assessment of performance and some welfare indicators of cows in Vietnamese smallholder dairy farms. Animals, 11 (3) 674, 1-22. doi: 10.3390/ani11030674 |
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2021 Journal Article Investigating the effect of imputed structural variants from whole‐genome sequence on genome‐wide association and genomic prediction in dairy cattleChen, Long, Pryce, Jennie E., Hayes, Ben J. and Daetwyler, Hans D. (2021). Investigating the effect of imputed structural variants from whole‐genome sequence on genome‐wide association and genomic prediction in dairy cattle. Animals, 11 (2) 541, 1-16. doi: 10.3390/ani11020541 |
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2021 Journal Article Strategies and considerations for implementing genomic selection to improve traits with additive and non-additive genetic architectures in sugarcane breedingVoss-Fels, Kai P., Wei, Xianming, Ross, Elizabeth M., Frisch, Matthias, Aitken, Karen S., Cooper, Mark and Hayes, Ben J. (2021). Strategies and considerations for implementing genomic selection to improve traits with additive and non-additive genetic architectures in sugarcane breeding. Theoretical and Applied Genetics, 134 (5), 1493-1511. doi: 10.1007/s00122-021-03785-3 |
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2021 Journal Article Accuracy of genomic prediction of complex traits in sugarcaneHayes, Ben J., Wei, Xianming, Joyce, Priya, Atkin, Felicity, Deomano, Emily, Yue, Jenny, Nguyen, Loan, Ross, Elizabeth M., Cavallaro, Tony, Aitken, Karen S. and Voss-Fels, Kai P. (2021). Accuracy of genomic prediction of complex traits in sugarcane. Theoretical and Applied Genetics, 134 (5), 1455-1462. doi: 10.1007/s00122-021-03782-6 |
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2021 Journal Article Characteristics of cowsheds in Vietnamese smallholder dairy farms and their associations with microclimate—a preliminary studyBang, Nguyen N., Gaughan, John B., Hayes, Ben J., Lyons, Russell E., Chanh, Nguyen V., Trach, Nguyen X., Khang, Duong N. and McNeill, David M. (2021). Characteristics of cowsheds in Vietnamese smallholder dairy farms and their associations with microclimate—a preliminary study. Animals, 11 (2) 351, 1-21. doi: 10.3390/ani11020351 |
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2021 Journal Article Breed-adjusted genomic relationship matrices as a method to account for population stratification in multibreed populations of tropically adapted beef heifersWarburton, Christie L., Costilla, Roy, Engle, Bailey N., Corbet, Nicholas J., Allen, Jack M., Fordyce, Geoffry, McGowan, Michael R., Burns, Brian M. and Hayes, Ben J. (2021). Breed-adjusted genomic relationship matrices as a method to account for population stratification in multibreed populations of tropically adapted beef heifers. Animal Production Science, 61 (18), 1788-1795. doi: 10.1071/an21057 |
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2020 Journal Article Feed preference response of weaner bull calves to Bacillus amyloliquefaciens H57 probiotic and associated volatile organic compounds in high concentrate feed pelletsNgo, Thi Thuy, Bang, Nguyen N., Dart, Peter, Callaghan, Matthew, Klieve, Athol, Hayes, Ben and McNeill, David (2020). Feed preference response of weaner bull calves to Bacillus amyloliquefaciens H57 probiotic and associated volatile organic compounds in high concentrate feed pellets. Animals, 11 (1) 51, 51-15. doi: 10.3390/ani11010051 |
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2020 Journal Article Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivoGarner, J. B., Chamberlain, A. J., Vander Jagt, C., Nguyen, T. T.T., Mason, B. A., Marett, L. C., Leury, B. J., Wales, W. J. and Hayes, B. J. (2020). Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo. Scientific Reports, 10 (1) 19181, 19181. doi: 10.1038/s41598-020-75438-2 |
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2020 Journal Article The future of livestock management: a review of real-time portable sequencing applied to livestockLamb, Harrison J., Hayes, Ben J., Nguyen, Loan T. and Ross, Elizabeth M. (2020). The future of livestock management: a review of real-time portable sequencing applied to livestock. Genes, 11 (12) 1478, 1-27. doi: 10.3390/genes11121478 |
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2020 Journal Article Genomic predictions for enteric methane production are improved by metabolome and microbiome data in sheep (Ovis aries)Ross, Elizabeth M., Hayes, Ben J., Tucker, David, Bond, Jude, Denman, Stuart E. and Oddy, Victor Hutton (2020). Genomic predictions for enteric methane production are improved by metabolome and microbiome data in sheep (Ovis aries). Journal of Animal Science, 98 (10) skaa262. doi: 10.1093/jas/skaa262 |
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2020 Journal Article Using prior information from humans to prioritize genes and gene-associated variants for complex traits in livestockRaymond, Biaty, Yengo, Loic, Costilla, Roy, Schrooten, Chris, Bouwman, Aniek C., Hayes, Ben J., Veerkamp, Roel F. and Visscher, Peter M. (2020). Using prior information from humans to prioritize genes and gene-associated variants for complex traits in livestock. PLoS Genetics , 16 (9) e1008780, 1-20. doi: 10.1371/journal.pgen.1008780 |
