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2014 Journal Article Interactive visualization and analysis of large-scale sequencing datasets using ZENBUSeverin, Jessica, Lizio, Marina, Harshbarger, Jayson, Kawaji, Hideya, Daub, Carsten O., Hayashizaki, Yoshihide, Bertin, Nicolas, Forrest, Alistair R. R., FANTOM Consortium, Beckhouse, Anthony, Wells, Christine, Vijayan, Dipti, Mason, Elizabeth, Wolvetang, Ernst, Hitchens, Kelly, Le Cao, Kim-Anh, Nielsen, Lars, Fearnley, Liam and Kenna, Tony (2014). Interactive visualization and analysis of large-scale sequencing datasets using ZENBU. Nature Biotechnology, 32 (3), 217-219. doi: 10.1038/nbt.2840 |
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2014 Journal Article Generation and characterization of leukemia inhibitory factor-dependent equine induced pluripotent stem cells from adult dermal fibroblastsWhitworth, Deanne J., Ovchinnikov, Dmitry A., Sun, Jane, Fortuna, Patrick R. J. and Wolvetang, Ernst J. (2014). Generation and characterization of leukemia inhibitory factor-dependent equine induced pluripotent stem cells from adult dermal fibroblasts. Stem Cells and Development, Fast Track Articles (13), 1-9. doi: 10.1089/scd.2013.0461 |
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2014 Journal Article A promoter-level mammalian expression atlasForest, Alistair R. R., Kawaji, Hideya, Rehli, Michael, Baillie, J. Kenneth, De Hoon, Michael J. L., Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V., Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J., Meehan, Terrence F., Schmeier, Sebastian, Bertin, Nicholas, Jorgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A., Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A., Ishizu, Yuri, Young, Robert S., Francescatto, Margherita, Altschuler, Intikhab ... Hayashizaki, Yoshihide (2014). A promoter-level mammalian expression atlas. Nature, 507 (7493), 462-470. doi: 10.1038/nature13182 |
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2014 Journal Article Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like moleculesGrison, Alice, Zucchelli, Silvia, Urzi, Alice, Zamparo, Ilaria, Lazarevic, Dejan, Pascarella, Giovanni, Roncaglia, Paola, Giorgetti, Alejandro, Garcia-Esparcia, Paula, Vlachouli, Christina, Simone, Roberto, Persichetti, Francesca, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Carloni, Paolo, Ferrer, Isidro, Lodovichi, Claudia, Plessy, Charles, the FANTOM Consortium, Carninci, Piero, Gustincich, Stefano, Beckhouse, Anthony, Briggs, James, Hitchens, Kelly, Kenna, Tony, Ovchinnikov, Dmitry, Vijayan, Dipti, Wells, Christine, Wolvetang, Ernst ... Nielsen, Lars (2014). Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules. BMC Genomics, 15 (1) 729. doi: 10.1186/1471-2164-15-729 |
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2014 Conference Publication Accelerating development of stem cell-derived therapies using multiplexed microbioreactor arraysTitmarsh, P., Hudson, J., Frith, J.E., Padmanabhan, H., Hidalgo-Gonzalez, A., Glass, N., Ovchinnikov, D., Porrello, E., Wolvetang, E. and White, C.-J. (2014). Accelerating development of stem cell-derived therapies using multiplexed microbioreactor arrays. 4th International Conference on Stem Cell Engineering, Coronado, United States, 16-19 March 2014. New York, United States: American Institute of Chemical Engineers. |
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2014 Journal Article A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiationTomaru, Yasuhiro, Hasegawa, Ryota, Suzuki, Takahiro, Sato, Taiji, Kubosaki, Atsutaka, Suzuki, Masanori, Kawaji, Hideya, Forrest, Alistair R. R., Hayashizaki, Yoshihide, FANTOM Consortium, Shin, Jay W., Suzuki, Harukazu, Beckhouse, Anthony, Wells, Christine, Vijayan, Dipti, Wolvetang, Ernst, Hitchens, Kelly, Fearnley, Liam, Kenna, Tony, Blumenthal, Antje, Briggs, James, Ovchinnikov, Dmitry, Le Cao, Kim-Anh, Mason, Elizabeth and Nielsen, Lars (2014). A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation. Nucleic Acids Research, 42 (14), 8905-8913. doi: 10.1093/nar/gku567 |
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2014 Journal Article A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulatorsHurst, Laurence D., Sachenkova, Oxana, Daub, Carsten, Forrest, Alistair R. R., the FANTOM consortium, Huminiecki, Lukasz, Beckhouse, Anthony, Wells, Christine, Vijayan, Dipti, Wolvetang, Ernst, Hitchens, Kelly, Kenna, Tony, Blumenthal, Antje, Briggs, James, Ovchinnikov, Dmitry, Fearnley, Liam, Le Cao, Kim-Anh, Mason, Elizabeth and Nielsen, Lars (2014). A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators. Genome Biology, 15 (7) 413. doi: 10.1186/s13059-014-0413-3 |
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2014 Conference Publication Generation of cellular models of Parkinson’s disease using induced-pluripotent stem cells derived from patients with monogenic diseaseBlair, Nicholas, Gao, Stephen, Woodbridge, Paula, Wolvetang, Ernst, Vaughan, Christopher and Sue, Carolyn (2014). Generation of cellular models of Parkinson’s disease using induced-pluripotent stem cells derived from patients with monogenic disease. Australian and New Zealand Association of Neurologists (ANZAN) Annual Scientific Meeting, Adelaide, Australia, 18-22 May 2014. London, United Kingdom: Churchill Livingstone. doi: 10.1016/j.jocn.2014.06.088 |
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2013 Journal Article Identification of Unsafe Human Induced Pluripotent Stem Cell Lines Using a Robust Surrogate Assay for PluripotencyPolanco, Juan Carlos, Ho, Mirabelle S. H., Wang, Bei, Zhou, Qi, Wolvetang, Ernst, Mason, Elizabeth, Wells, Christine A., Kolle, Gabriel, Grimmond, Sean M., Bertoncello, Ivan, O'Brien, Carmel and Laslett, Andrew L. (2013). Identification of Unsafe Human Induced Pluripotent Stem Cell Lines Using a Robust Surrogate Assay for Pluripotency. Stem Cells, 31 (8), 1498-1510. doi: 10.1002/stem.1425 |
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2013 Journal Article Full factorial screening of human embryonic stem cell maintenance with multiplexed microbioreactor arraysTitmarsh, Drew M., Ovchinnikov, Dmitry A., Wolvetang, Ernst J. and Cooper-White, Justin J. (2013). Full factorial screening of human embryonic stem cell maintenance with multiplexed microbioreactor arrays. Biotechnology Journal, 8 (7), 822-834. doi: 10.1002/biot.201200375 |
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2013 Journal Article Autophagy in stem cellsGuan, Jun-Lin, Simon, Anna Katharina, Prescott, Mark, Menendez, Javier A., Liu, Fei, Wang, Fen, Wang, Chenran, Wolvetang, Ernst, Vazquez-Martin, Alejandro and Zhang, Jue (2013). Autophagy in stem cells. Autophagy, 9 (6), 830-849. doi: 10.4161/auto.24132 |
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2013 Journal Article Concise review: new paradigms for down syndrome research using induced pluripotent stem cells: tackling complex human genetic diseaseBriggs, James A., Mason, Elizabeth A., Ovchinnikov, Dmitry A., Wells, Christine A. and Wolvetang, Ernst J. (2013). Concise review: new paradigms for down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease. Stem Cells Translational Medicine, 2 (3), 175-184. doi: 10.5966/sctm.2012-0117 |
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2013 Journal Article Integration-free induced pluripotent stem cells model genetic and neural developmental features of Down Syndrome etiologyBriggs, James A., Sun, Jane, Shepherd, Jill, Ovchinnikov, Dmitry A., Chung, Tung-Liang, Nayler, Sam P., Kao, Li-Pin, Morrow, Carl A., Thakar, Nilay Y., Soo, Set-Yen, Peura, Teija, Grimmond, Sean and Wolvetang, Ernst J. (2013). Integration-free induced pluripotent stem cells model genetic and neural developmental features of Down Syndrome etiology. Stem Cells, 31 (3), 467-478. doi: 10.1002/stem.1297 |
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2013 Journal Article Tailorable cell culture platforms from enzymatically cross-linked multifunctional poly(ethylene glycol)-based hydrogelsMenzies, Donna J., Cameron, Andrew, Munro, Trent, Wolvetang, Ernst, Grondahl, Lisbeth and Cooper-White, Justin J. (2013). Tailorable cell culture platforms from enzymatically cross-linked multifunctional poly(ethylene glycol)-based hydrogels. Biomacromolecules, 14 (2), 413-423. doi: 10.1021/bm301652q |
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2013 Journal Article Arrayed cellular environments for stem cells and regenerative medicineTitmarsh, Drew M., Chen, Huaying, Wolvetang, Ernst J. and Cooper-White, Justin J. (2013). Arrayed cellular environments for stem cells and regenerative medicine. Biotechnology Journal, 8 (2), 167-179. doi: 10.1002/biot.201200149 |
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2013 Conference Publication FGF/ERK signalling induces X chromosome inactivation in LIF-dependent equine induced pluripotent stem cellsWhitworth, Deanne J., Ovchinnikov, Dmitry A., Sun, Jane, Fortuna, Patrick R. J. and Wolvetang, Ernst J. (2013). FGF/ERK signalling induces X chromosome inactivation in LIF-dependent equine induced pluripotent stem cells. ASSCR 2013: 6th Annual Meeting for Australasian Society for Stem Cell Research, South Bank, QLD, Australia, 27-29 October, 2013. |
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2013 Journal Article Will brain cells derived from induced pluripotent stem cells or directly converted from somatic cells (iNs) be useful for schizophrenia research?Filippich, Cheryl, Wolvetang, Ernst J. and Mowry, Bryan J. (2013). Will brain cells derived from induced pluripotent stem cells or directly converted from somatic cells (iNs) be useful for schizophrenia research?. Schizophrenia Bulletin, 39 (5), 948-954. doi: 10.1093/schbul/sbt103 |
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2013 Conference Publication A Separable Upstream Promoter of the Slc8a1 (NCX1) Gene Efficiently Marks Cardiac Cell Populations Derived from Human Pluripotent Stem CellsHidalgo-Gonzalez, Alejandro, Ovchinnikov, Dmitry A., Hudson, James, Cooper-White, Justin and Ernst, Wolvetang (2013). A Separable Upstream Promoter of the Slc8a1 (NCX1) Gene Efficiently Marks Cardiac Cell Populations Derived from Human Pluripotent Stem Cells. Scientific Sessions of the American Heart Association on Basic Cardiovascular Sciences, Las Vegas Nv, 22 - 25 July 2013. Baltimore, MD United States: Lippincott Williams & Wilkins. |
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2013 Journal Article The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicingBarry, Guy, Briggs, J. A., Vanichkina, D. P., Poth, E. M., Beveridge, N. J., Vikram Ratnu, Nayler, S. P., Nones, K., Hu, J., Timothy Bredy, Nakagawa, S., Rigo, F., Taft, R. J., Cairns, M. J., Blackshaw, S., Wolvetang, E. J. and Mattick, J. S. (2013). The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. Molecular Psychiatry, 19 (4), 486-494. doi: 10.1038/mp.2013.45 |
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2012 Journal Article Microbioreactor arrays for full factorial screening of exogenous and paracrine factors in human embryonic stem cell differentiationTitmarsh, Drew M., Hudson, James E., Hidalgo, Alejandro, Elefanty, Andrew G., Stanley, Edouard G., Wolvetang, Ernst J. and Cooper-White, Justin J. (2012). Microbioreactor arrays for full factorial screening of exogenous and paracrine factors in human embryonic stem cell differentiation. PLoS One, 7 (12) e52405, e52405.1-e52405.12. doi: 10.1371/journal.pone.0052405 |
