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2015 Journal Article Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisitionBeatson, Scott A., Ben Zakour, Nouri L., Totsika, Makrina, Forde, Brian M., Watts, Rebecca E., Mabbett, Amanda N., Szubert, Jan M., Sarkar, Sohinee, Phan, Minh-Duy, Peters, Kate M., Petty, Nicola K., Alikhan, Nabil-Fareed, Sullivan, Mitchell J., Gawthorne, Jayde A., Stanton-Cook, Mitchell, Nguyen Thi Khanh Nhu, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, Hancock, Viktoria, Ussery, David W., Ulett, Glen C. and Schembri, Mark A. (2015). Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infection and Immunity, 83 (5), 1749-1764. doi: 10.1128/IAI.02810-14 |
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2015 Journal Article Molecular Characterization of a Multidrug Resistance IncF Plasmid from the Globally Disseminated Escherichia coli ST131 Clone.Phan, Minh Duy, Forde, Brian M., Peters, Kate M., Sarkar, Sohinee, Hancock, Steven, Stanton-Cook, Mitchell, Zakour, Nouri L. Ben, Upton, Mathew, Beatson, Scott A. and Schembri, Mark A. (2015). Molecular Characterization of a Multidrug Resistance IncF Plasmid from the Globally Disseminated Escherichia coli ST131 Clone.. PLoS One, 10 (4) e0122369, e0122369-e0122369. doi: 10.1371/journal.pone.0122369 |
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2015 Journal Article Third-generation cephalosporin resistance conferred by a chromosomally encoded blaCMY-23 gene in the Escherichia coli ST131 reference strain EC958Phan, Minh-Duy, Peters, Kate M., Sarkar, Sohinee, Forde, Brian M., Lo, Alvin W., Stanton-Cook, Mitchell, Roberts, Leah W., Upton, Mathew, Beatson, Scott A. and Schembri, Mark A. (2015). Third-generation cephalosporin resistance conferred by a chromosomally encoded blaCMY-23 gene in the Escherichia coli ST131 reference strain EC958. Journal of Antimicrobial Chemotherapy, 70 (7) dkv066, 1969-1972. doi: 10.1093/jac/dkv066 |
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2014 Journal Article Unusual genome complexity in Lactobacillus salivarius JCM1046Raftis, Emma J., Forde, Brian M., Claesson, Marcus J. and O'Toole, Paul W. (2014). Unusual genome complexity in Lactobacillus salivarius JCM1046. BMC Genomics, 15 (1) 771, 771. doi: 10.1186/1471-2164-15-771 |
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2014 Journal Article The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 cloneForde, Brian M., Ben Zakour, Nouri L., Stanton-Cook, Mitchell, Phan, Minh-Duy, Totsika, Makrina, Peters, Kate M., Chan, Kok Gan, Schembri, Mark A., Upton, Mathew and Beatson, Scott A. (2014). The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone. PLoS One, 9 (8) e104400, e104400.1-e104400.13. doi: 10.1371/journal.pone.0104400 |
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2014 Journal Article Global dissemination of a multidrug resistant Escherichia coli clonePetty, Nicola K., Ben Zakour, Nouri L., Stanton-Cook, Mitchell, Skippington, Elizabeth, Totsika, Makrina, Forde, Brian M., Phan, Minh-Duy, Gomes Moriel, Danilo, Peters, Kate M., Davies, Mark, Rogers, Benjamin A., Dougan, Gordon, Rodriguez-Baño, Jesús, Pascual, Alvaro, Pitout, Johann D., Upton, Mathew, Paterson, David L., Walsh, Timothy R., Schembri, Mark A. and Beatson, Scott A. (2014). Global dissemination of a multidrug resistant Escherichia coli clone. Proceedings of the National Academy of Sciences, 111 (15), 5694-5699. doi: 10.1073/pnas.1322678111 |
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2013 Journal Article Next-generation sequencing technologies and their impact on microbial genomicsForde, Brian M. and O'Toole, Paul W. (2013). Next-generation sequencing technologies and their impact on microbial genomics. Briefings in Functional Genomics, 12 (5), 440-453. doi: 10.1093/bfgp/els062 |
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2012 Journal Article Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile LactobacilliNeville, B. Anne, Forde, Brian M., Claesson, Marcus J., Darby, Trevor, Coghlan, Avril, Nally, Kenneth, Ross, R. Paul and O'Toole, Paul W. (2012). Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile Lactobacilli. PLoS One, 7 (7) e40592, e40592. doi: 10.1371/journal.pone.0040592 |
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2012 Journal Article Draft Genome Sequences of Helicobacter pylori Strains 17874 and P79Clancy, Ceara D., Forde, Brian M., Moore, Stanley A. and O'Toole, Paul W. (2012). Draft Genome Sequences of Helicobacter pylori Strains 17874 and P79. Journal of Bacteriology, 194 (9), 2402-2402. doi: 10.1128/JB.00230-12 |
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2012 Journal Article Effect of Lactobacillus salivarius bacteriocin Abp118 on the mouse and pig intestinal microbiotaRiboulet-Bisson, Eliette, Sturme, Mark H. J., Jeffery, Ian B., O'Donnell, Michelle M., Neville, B. Anne, Forde, Brian M., Claesson, Marcus J., Harris, Hugh, Gardiner, Gillian E., Casey, Patrick G., Lawlor, Peadar G., O'Toole, Paul W. and Ross, R. Paul (2012). Effect of Lactobacillus salivarius bacteriocin Abp118 on the mouse and pig intestinal microbiota. PLoS One, 7 (2) e31113, e31113. doi: 10.1371/journal.pone.0031113 |
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2011 Conference Publication Carbohydrate catabolic flexibility in the mammalian intestinal commensal Lactobacillus ruminis revealed by fermentation studies aligned to genome annotationsDonnell, Michelle M. O', Forde, Brian M., Neville, B., Ross, Paul R. and Toole, Paul W. O' (2011). Carbohydrate catabolic flexibility in the mammalian intestinal commensal Lactobacillus ruminis revealed by fermentation studies aligned to genome annotations. 10th Symposium on Lactic Acid Bacterium, The Netherlands, 28 August - 1 September 2011. London, United Kingdom: BioMed Central. doi: 10.1186/1475-2859-10-S1-S12 |
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2011 Conference Publication Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tractsForde, Brian M., Neville, B. Anne, O'Donnell, Michelle M. , Riboulet-Bisson, E., Claesson, M. J., Coghlan, Avril, Ross, R. Paul and O'Toole, Paul W. (2011). Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts. 10th Symposium on Lactic Acid Bacterium (LAB), Egmond aan Zee, Netherlands, 28 August-1 September 2011. London, United Kingdom: BioMed Central. doi: 10.1186/1475-2859-10-S1-S13 |
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2010 Journal Article Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogenO'Toole, Paul W., Snelling, William J., Canchaya, Carlos, Forde, Brian M., Hardie, Kim R., Josenhans, Christine, Graham, Robert L. J., McMullan, Geoff, Parkhill, Julian, Belda, Eugenio and Bentley, Stephen D. (2010). Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen. BMC Genomics, 11 (1) 164, 164. doi: 10.1186/1471-2164-11-164 |
