Overview
Availability
- Dr Yang Yang is:
- Available for supervision
Fields of research
Qualifications
- Doctor of Philosophy, University of New South Wales
Research interests
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Bioinformatics; Machine learning; Dimensionality Reduction; Geometric Deep Learning
Works
Search Professor Yang Yang’s works on UQ eSpace
2023
Journal Article
Dimensionality reduction under scrutiny
Yang, Yang, Tuong, Zewen K. and Yu, Di (2023). Dimensionality reduction under scrutiny. Nature Computational Science, 3 (1), 8-9. doi: 10.1038/s43588-022-00383-1
2022
Journal Article
Extrafollicular PD-1highCXCR5–CD4+ T cells participate in local immunoglobulin production in nasal polyps
Wang, Zhi-Chao, Yao, Yin, Chen, Cai-Ling, Guo, Cui-Lian, Ding, Hong-Xia, Song, Jia, Wang, Zhe-Zheng, Wang, Nan, Li, Xue-Li, Liao, Bo, Yang, Yang, Yu, Di and Liu, Zheng (2022). Extrafollicular PD-1highCXCR5–CD4+ T cells participate in local immunoglobulin production in nasal polyps. Journal of Allergy and Clinical Immunology, 149 (2), 610-623. doi: 10.1016/j.jaci.2021.06.023
2021
Journal Article
Understand SLE heterogeneity in the era of omics, big data, and artificial intelligence
Puri, Prianka, Jiang, Simon H., Yang, Yang, Mackay, Fabienne and Yu, Di (2021). Understand SLE heterogeneity in the era of omics, big data, and artificial intelligence. Rheumatology and Autoimmunity, 1 (1), 38-49. doi: 10.1002/rai2.12010
2021
Journal Article
Selenium–GPX4 axis protects follicular helper T cells from ferroptosis
Yao, Yin, Chen, Zhian, Zhang, Hao, Chen, Cailing, Zeng, Ming, Yunis, Joseph, Wei, Yunbo, Wan, Yanmin, Wang, Naiqi, Zhou, Mingzhe, Qiu, Chao, Zeng, Qunxiong, Ong, Hong Sheng, Wang, Hao, Makota, Fadzai Victor, Yang, Yang, Yang, Zhaohui, Wang, Nan, Deng, Jun, Shen, Chao, Xia, Yan, Yuan, Lin, Lian, Zhaoqin, Deng, Yike, Guo, Cuilian, Huang, Ao, Zhou, Pengcheng, Shi, Haibo, Zhang, Weitian ... Yu, Di (2021). Selenium–GPX4 axis protects follicular helper T cells from ferroptosis. Nature Immunology, 22 (9), 1127-1139. doi: 10.1038/s41590-021-00996-0
2021
Journal Article
Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data
Yang, Yang, Sun, Hongjian, Zhang, Yu, Zhang, Tiefu, Gong, Jialei, Wei, Yunbo, Duan, Yong-Gang, Shu, Minglei, Yang, Yuchen, Wu, Di and Yu, Di (2021). Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data. Cell Reports, 36 (4) 109442, 109442. doi: 10.1016/j.celrep.2021.109442
2021
Journal Article
Association of low blood arsenic exposure with level of malondialdehyde among Chinese adults aged 65 and older
Tan, Qiyue, Lv, Yuebin, Zhao, Feng, Zhou, Jinhui, Yang, Yang, Liu, Yingchun, Zhang, Mingyuan, Lu, Feng, Wei, Yuan, Chen, Xin, Zhang, Ruizhi, Chen, Chen, Wu, Bing, Zhang, Xiaochang, Li, Chengcheng, Huang, Hongyuan, Cai, Junfang, Cao, Zhaojin, Yu, Di, Ji, John S., Zhao, Shuhua and Shi, Xiaoming (2021). Association of low blood arsenic exposure with level of malondialdehyde among Chinese adults aged 65 and older. Science of the Total Environment, 758 143638, 1-8. doi: 10.1016/j.scitotenv.2020.143638
2020
Journal Article
Prominent immune signatures of T cells are specifically associated with indolent B-cell lymphoproliferative disorders and predict prognosis
Yi, Shuhua, Zhang, Yu, Xiong, Wenjie, Chen, Weiwei, Hou, Zhaohua, Yang, Yang, Yan, Yuting, Wei, Yunbo, Cui, Rui, Wang, Huijun, Yu, Zhen, Li, Heng, Li, Zengjun, Liu, Wei, Lv, Rui, Wang, Tingyu, Ru, Kun, Zou, Dehui, Shu, Minglei, Qiu, Lugui and Yu, Di (2020). Prominent immune signatures of T cells are specifically associated with indolent B-cell lymphoproliferative disorders and predict prognosis. Clinical and Translational Immunology, 9 (1) e01105. doi: 10.1002/cti2.1105
2019
Journal Article
Selectivity estimation on set containment search
Yang, Yang, Zhang, Wenjie, Zhang, Ying, Lin, Xuemin and Wang, Liping (2019). Selectivity estimation on set containment search. Data Science and Engineering, 4 (3), 254-268. doi: 10.1007/s41019-019-00104-1
2019
Conference Publication
GB-KMV: an augmented KMV sketch for approximate containment similarity search
Yang, Yang, Zhang, Ying, Zhang, Wenjie and Huang, Zengfeng (2019). GB-KMV: an augmented KMV sketch for approximate containment similarity search. 2019 IEEE 35th International Conference on Data Engineering (ICDE), Macao, China, 8-11 April 2019. Piscataway, NJ USA: Institute of Electrical and Electronics Engineers. doi: 10.1109/icde.2019.00048
2019
Conference Publication
Selectivity estimation on set containment search
Yang, Yang, Zhang, Wenjie, Zhang, Ying, Lin, Xuemin and Wang, Liping (2019). Selectivity estimation on set containment search. 24th International Conference, DASFAA 2019, Chiang Mai, Thailand, 22–25 April 2019. Cham, Switzerland: Springer. doi: 10.1007/978-3-030-18576-3_20
Supervision
Availability
- Dr Yang Yang is:
- Available for supervision
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Supervision history
Current supervision
-
Doctor Philosophy
Investigate T cell specificity and function in immune responses by systems immunology
Associate Advisor
Other advisors: Dr Kelvin Tuong, Professor Di Yu
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Doctor Philosophy
Modelling T cell functional subsets
Associate Advisor
Other advisors: Professor Di Yu
-
Doctor Philosophy
Temporal tracking of T cell functional differentiation by single-cell RNA-sequencing to inform immunotherapy
Associate Advisor
Other advisors: Dr Pablo Canete, Professor Di Yu
-
Doctor Philosophy
Translational meaning of the efficacy of immunotherapies as neoadjuvants to treat Head and Neck cancers.
Associate Advisor
Other advisors: Dr Quan Nguyen, Dr Kelvin Tuong, Associate Professor James Wells, Dr Jazmina Gonzalez Cruz
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Doctor Philosophy
An integration of multi-omics and machine learning to stratify patients with lupus nephritis for precision medicine
Associate Advisor
Other advisors: Professor Di Yu
Media
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