Overview
Background
With a strong foundation in food science, fermentation, analytical chemistry, and sustainable food systems, Jiahua’s work focuses on microbial transformation of natural food into high-value functional food products using advanced fermentation technologies, including food grade fermentation and solid-state fermentation. Her research helps address critical industry challenges such as food waste reduction, upcycling of processing residues, development of novel food ingredients, and improvement of nutritional profiles in food and beverage products. Another key focus of Jiahua’s role is developing innovative food products and conducting shelf life testing. She transforms novel ideas into market-ready products by carefully balancing functionality, nutrition, sensory quality, and commercial feasibility.
Jiahua has led and contributed to numerous nationally and internationally funded research projects, collaborating with food industry partners, government agencies, and research institutions across Australia, China, Singapore, and Denmark. Her translational research supports industry needs in product innovation, ingredient development, and sustainable processing. Since 2015, Jiahua has attracted 6 research grants (>1.2 million) as chief investigator (lead CI and/or co-CI).
Jiahua recently secured a $5.6 million research project in May 2025 as the Lead Chief Investigator for “Premium Oat Innovations: Developing High-Value Oat-Based Food Products for Emerging Markets.” This project aims to create innovative, oat-based solutions tailored to evolving global consumer needs, with a strong focus on nutrition, sensory quality, and market differentiation.
Availability
- Dr Jiahua Shi is:
- Available for supervision
Fields of research
Qualifications
- Bachelor (Honours) of Biotechnology, Beijing University of Chemical Technology (北京化工大学)
- Doctor of Philosophy of Chemical and Biomedical, Nanyang Technological University
Research interests
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Premium Australian food and beverage
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Sustainable food processing system
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High value nutrients and food ingredients
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Microbial conversion of food waste
Works
Search Professor Jiahua Shi’s works on UQ eSpace
Featured
2024
Journal Article
Effect of high-pressure on protein structure, refolding, and crystallization
Baldelli, Alberto, Shi, Jiahua, Singh, Anika, Guo, Yigong, Fathordoobady, Farahnaz, Amiri, Amir and Pratap-Singh, Anubhav (2024). Effect of high-pressure on protein structure, refolding, and crystallization. Food Chemistry Advances, 5 100741, 100741. doi: 10.1016/j.focha.2024.100741
Featured
2024
Journal Article
Inverse metabolic engineering based on metabonomics for efficient production of hydroxytyrosol by Saccharomyces cerevisiae
Liu, Yingjie, Gu, Bixuan, Shi, Jiahua, Fu, Changchun, Zhang, Xuepeng, Chen, Xinqi, Yang, Ruijin and Lyu, Xiaomei (2024). Inverse metabolic engineering based on metabonomics for efficient production of hydroxytyrosol by Saccharomyces cerevisiae. Bioresource Technology, 409 131187, 131187. doi: 10.1016/j.biortech.2024.131187
Featured
2024
Conference Publication
FDNet: frequency domain denoising network for cell segmentation in astrocytes derived from induced pluripotent stem cells
Li, Haoran, Shi, Jiahua, Chen, Huaming, Du, Bo, Maksour, Simon, Phillips, Gabrielle, Dottori, Mirella and Shen, Jun (2024). FDNet: frequency domain denoising network for cell segmentation in astrocytes derived from induced pluripotent stem cells. 2024 IEEE International Symposium on Biomedical Imaging (ISBI), Athens, Greece, 27-30 May 2024. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/ISBI56570.2024.10635607
2026
Journal Article
From Unsupervised to Zero-Shot: 3D Domain Adaptation for Cryo-Electron Tomography Segmentation
Li, Haoran, Li, Xingjian, Wang, Huan, Shi, Jiahua, Chen, Huaming, Du, Bo, Barthelemy, Johan, Kihara, Daisuke, Shen, Jun and Xu, Min (2026). From Unsupervised to Zero-Shot: 3D Domain Adaptation for Cryo-Electron Tomography Segmentation. International Journal of Computer Vision, 134 (5) 219. doi: 10.1007/s11263-026-02802-6
2026
Conference Publication
Aspergillus oryzae and Rhizopus oligosporus: Multi-Omics Characterisation of Fibre and Protein Transformation
Tong, Xin, Guo, Ziwei, Xiang, Yuwei, Turner, Mark and Shi, Jiahua (2026). Aspergillus oryzae and Rhizopus oligosporus: Multi-Omics Characterisation of Fibre and Protein Transformation. Queensland Mass Spectrometry Symposium (QMSS) 2026, Brisbane, QLD Australia, 28-29 January 2026.
2026
Conference Publication
Valorisation of Brewers’ Spent Grain through Solid-State Fermentation: Protein Hydrolysis, Fiber Degradation and Release of Bioactive Compounds
Guo, Ziwei, Tong, Xin, Xiang, Yuwei, Turner, Mark and Shi, Jiahua (2026). Valorisation of Brewers’ Spent Grain through Solid-State Fermentation: Protein Hydrolysis, Fiber Degradation and Release of Bioactive Compounds. Queensland Mass Spectrometry Symposium (QMSS) 2026, Brisbane, QLD Australia, 28-29 January 2026.
2026
Journal Article
MVGFormer: multi-view perspective with graph-guided transformer for cryo-ET segmentation
Li, Haoran, Li, Xingjian, Wang, Huan, Shi, Jiahua, Chen, Huaming, Zhao, Yizhou, Du, Bo, Barthelemy, Johan, Kihara, Daisuke, Shen, Jun and Xu, Min (2026). MVGFormer: multi-view perspective with graph-guided transformer for cryo-ET segmentation. Knowledge-Based Systems, 331 114810, 1-15. doi: 10.1016/j.knosys.2025.114810
2026
Journal Article
A survey on graph neural networks
Zhang, Xinyang, Li, Shengrong, Li, Haoran, Gong, Peiliang, Shi, Jiahua, Shen, Jun, Tian, Chunwei, Zhang, Daoqiang and Zhu, Qi (2026). A survey on graph neural networks. IEEE Access, 14, 27491-27512. doi: 10.1109/access.2026.3665657
2026
Conference Publication
Towards Zero-Shot Diabetic Retinopathy Grading: Learning Generalized Knowledge via Prompt-Driven Matching and Emulating
Wang, Huan, Li, Haoran, Lin, Yuxin, Chen, Huaming, Yan, Jun, Wang, Lijuan, Shi, Jiahua, Xu, Qihao, Hu, Yongting, Xu, Yong and Shen, Jun (2026). Towards Zero-Shot Diabetic Retinopathy Grading: Learning Generalized Knowledge via Prompt-Driven Matching and Emulating. Association for the Advancement of Artificial Intelligence. doi: 10.1609/aaai.v40i12.37948
2026
Journal Article
Dual Visual Prompting with Context-Modulated Diffusion Prompts
Wang, Huan, Li, Haoran, Chen, Huaming, Yan, Jun, Shi, Jiahua and Shen, Jun (2026). Dual Visual Prompting with Context-Modulated Diffusion Prompts. IEEE Transactions on Multimedia, PP (99), 1-12. doi: 10.1109/tmm.2026.3660167
2025
Journal Article
Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes
Martiny, Hannah-Marie, Munk, Patrick, Fuschi, Alessandro, Becsei, Agnes, Pyrounakis, Nikiforos, Brinch, Christian, Joakim Larsson, D. G., Koopmans, Marion, Zaatout, Nawel, Rees, Catherine, Jiang, Guangming, Shi, Jiahua, Benka, Bernhard, Allerberger, Franz, Koeberl-Jelovcan, Sandra, Abdulla, Khalil Hasan, Thani, Ali Bin, Begum, Anowara, Worrell, Carlon, Dougnon, Tamegnon Victorien, Soria, Freddy, Mazalica, Natasa, Rahube, Teddie, Martins, Andreza Francisco, Tagliati, Carlos Alberto, Souza, Larissa Camila Ribeiro de, Nzouankeu, Ariane, Rehman, Muhammad Attiq, Gauthier, Jeff ... Global Sewage Consortium (2025). Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes. Nature Communications, 16 (1) 10278, 1-12. doi: 10.1038/s41467-025-66070-7
2025
Journal Article
An ascorbic acid responsive nanoprobe for food shelf-life determination and plant growth assessment
Tian, Dihua, Zhang, Zexi, Plavilathundil, Suzanne Mathews, Tian, Xinyang, Seididamyeh, Maral, Alanazi, Mazen, Phan, Anh, Wu, Miaomiao, Shi, Jiahua, Sultanbawa, Yasmina, Carroll, Bernard J. and Zhang, Run (2025). An ascorbic acid responsive nanoprobe for food shelf-life determination and plant growth assessment. Food Chemistry, 492 (Pt 1) 145347, 1-11. doi: 10.1016/j.foodchem.2025.145347
2025
Journal Article
Deep learning-driven protein-ligand binding affinity prediction: data, architecture, training and evaluation
Li, Zhiwei, Zhou, Guoqiang, Li, Haoran, Mi, Jiacong, Shi, Jiahua and Shen, Jun (2025). Deep learning-driven protein-ligand binding affinity prediction: data, architecture, training and evaluation. IEEE Transactions on Computational Biology and Bioinformatics, 22 (6), 3419-3437. doi: 10.1109/tcbbio.2025.3627203
2025
Journal Article
Genome-wide identification of plant C2 domain-containing protein family and the role of OsNTMC2T2.2 under chilling stress in rice
Zhao, Liyan, Wang, Jingzhen, Zhou, Yuntao, Shi, Jiahua, Liu, Guoquan, Xie, Guosheng and Wang, Lingqiang (2025). Genome-wide identification of plant C2 domain-containing protein family and the role of OsNTMC2T2.2 under chilling stress in rice. Environmental and Experimental Botany, 237 106202, 1-18. doi: 10.1016/j.envexpbot.2025.106202
2025
Conference Publication
FedSC: federated learning with semantic-aware collaboration
Wang, Huan, Li, Haoran, Chen, Huaming, Yan, Jun, Shi, Jiahua and Shen, Jun (2025). FedSC: federated learning with semantic-aware collaboration. 31st International Conference on Knowledge Discovery and Data Mining-KDD, Toronto Canada, Aug 03-07, 2025. New York, NY, United States: ACM. doi: 10.1145/3711896.3736957
2025
Conference Publication
FedSKC: Federated Learning with Non-IID Data via Structural Knowledge Collaboration
Wang, Huan, Li, Haoran, Chen, Huaming, Yan, Jun, Wang, Lijuan, Shi, Jiahua, Chen, Shiping and Shen, Jun (2025). FedSKC: Federated Learning with Non-IID Data via Structural Knowledge Collaboration. 2025 IEEE International Conference on Web Services (ICWS), Helsinki, Finland, 7-12 July 2025. Piscataway, NJ United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/icws67624.2025.00093
2025
Journal Article
Rice-SVBDete: a detection algorithm for small vascular bundles in rice stem’s cross-sections
Zhu, Xiaoying, Zhou, Weiyu, Li, Jianguo, Yang, Mingchong, Zhou, Haiyu, Huang, Jiada, Shi, Jiahua, Shen, Jun, Pang, Guangyao and Wang, Lingqiang (2025). Rice-SVBDete: a detection algorithm for small vascular bundles in rice stem’s cross-sections. Frontiers in Plant Science, 16 1589161, 1589161. doi: 10.3389/fpls.2025.1589161
2025
Conference Publication
Vox-UDA: Voxel-wise Unsupervised Domain Adaptation for cryo-electron subtomogram segmentation with denoised pseudo-labeling
Li, Haoran, Li, Xingjian, Shi, Jiahua, Chen, Huaming, Du, Bo, Kihara, Daisuke, Barthelemy, Johan, Shen, Jun and Xu, Min (2025). Vox-UDA: Voxel-wise Unsupervised Domain Adaptation for cryo-electron subtomogram segmentation with denoised pseudo-labeling. 39th AAAI Conference on Artificial Intelligence, Philadelphia, PA USA, 25 February-4 March 2025. Washington, DC USA: Association for the Advancement of Artificial Intelligence. doi: 10.1609/aaai.v39i1.32019
2024
Journal Article
Characterisation and quantification of phenolic, anthocyanidin and terpene species in plant foods and plant food-based complementary products with antioxidant and neuroprotective properties
May, Naomi, Shi, Jiahua, Clunas, Helen, de Sousa Alves Neri, Julianna Lys, Kelso, Celine, Morgan, Jody, Yu, Yinghua, Charlton, Karen and Weston-Green, Katrina (2024). Characterisation and quantification of phenolic, anthocyanidin and terpene species in plant foods and plant food-based complementary products with antioxidant and neuroprotective properties. Food and Function, 15 (23), 11537-11563. doi: 10.1039/d4fo02942a
2024
Conference Publication
Transforming food waste into value: Industry innovations and sustainable solutions for a circular economy
Shi, Jiahua (2024). Transforming food waste into value: Industry innovations and sustainable solutions for a circular economy. DAF-QAAFI Food Science Seminar, Brisbane, QLD, Australia, 1 October 2024.
Supervision
Availability
- Dr Jiahua Shi is:
- Available for supervision
Looking for a supervisor? Read our advice on how to choose a supervisor.
Supervision history
Current supervision
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Doctor Philosophy
Biotransformation of ugly fruits and vegetables into value-added products using novel technologies
Principal Advisor
Other advisors: Professor Heather Smyth, Dr Alberto Baldelli
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Doctor Philosophy
Advanced biomanufacturing of novel cosmeceutical ingredients from Australian avocado food waste through the use of microbial biofactories
Principal Advisor
Other advisors: Associate Professor Adrian Oehmen
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Doctor Philosophy
Encapsulation of flavor and texture: engineered instant coffee latte
Associate Advisor
Other advisors: Professor Nidhi Bansal, Dr Alberto Baldelli
Media
Enquiries
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