
Overview
Background
Dr Clark is a Senior Lecturer at the School of Biomedical Sciences where he is Head of the Peptide Chemical Biology Lab. He completed his PhD in 2000 at the UQ Chemistry Department studying marine natural products chemistry and chemical ecology with Prof. Mary Garson. He then shifted his research focus towards peptide chemistry, structural biology and drug design when he was recruited to the lab of Prof. David Craik at the IMB. His current research focus is the development of technologies to stabilise peptide therapeutics and the elucidation of the structure/function activity of bioactive peptides.
Availability
- Associate Professor Richard Clark is:
- Available for supervision
Fields of research
Qualifications
- Bachelor (Honours) of Science (Advanced), University of Tasmania
- Doctor of Philosophy, The University of Queensland
Works
Search Professor Richard Clark’s works on UQ eSpace
2004
Conference Publication
Design, Synthesis and Structural Studies of Cyclic Alpha-Conotoxins
Clark, RJ, Dempster, L, Daly, NL, Rosengren, KJ and Craik, DJ (2004). Design, Synthesis and Structural Studies of Cyclic Alpha-Conotoxins. CHICHESTER: JOHN WILEY & SONS LTD.
2003
Conference Publication
Probing nucleotide dissociation from myosin in vitro using microgram quantities of myosin
Clark, Richard J., Nyitrai, Miklós, Webb, Martin R. and Geeves, Michael A. (2003). Probing nucleotide dissociation from myosin in vitro using microgram quantities of myosin.
2003
Journal Article
Disulfide folding pathways of cystine knot proteins: Tying the knot within the circular backbone of the cyclotides
Daly, N. L., Clark, R. J. and Craik, D. J. (2003). Disulfide folding pathways of cystine knot proteins: Tying the knot within the circular backbone of the cyclotides. The Journal of Biological Chemistry, 278 (8), 6314-6322. doi: 10.1074/jbc.M210492200
2003
Book Chapter
NMR and Drug Discovery
Craik, D. J. and Clark, R. J. (2003). NMR and Drug Discovery. Burger's Medicinal Chemistry and Drug Discovery, Vol 1, Drug Discovery. (pp. 507-582) edited by Donald J Abraham. USA: John Wiley & Sons. doi: 10.1002/0471266949.bmc011
2003
Journal Article
Structure-function studies of the plant cyclotides: The role of a circular protein backbone
Craik, David J., Barry, Daniel G., Clark, Richard J., Daly, Norelle L. and Sando, Lillian (2003). Structure-function studies of the plant cyclotides: The role of a circular protein backbone. Toxin Reviews, 22 (4), 555-576. doi: 10.1081/TXR-120026914
2003
Journal Article
Structure-function studies of the plant cyclotides: the role of a circular protein backbone
Craik, David J., Barry, Daniel G., Clark, Richard J., Daly, Norelle L. and Sando, Lillian (2003). Structure-function studies of the plant cyclotides: the role of a circular protein backbone. Journal of Toxicology: Toxin Reviews, 22 (4), 555-576. doi: 10.1081/TXR-120026914
2003
Journal Article
Linearization of a naturally occurring circular protein maintains structure but eliminates hemolytic activity
Barry, D. G., Daly, N. L., Clark, R. J., Sando, L. and Craik, D. J. (2003). Linearization of a naturally occurring circular protein maintains structure but eliminates hemolytic activity. Biochemistry, 42 (22), 6688-6695. doi: 10.1021/bi027323n
2003
Journal Article
Diversity in the disulfide folding pathways of cystine knot peptides
Daly, N. L., Clark, R. J., Goransson, U. and Craik, D. J. (2003). Diversity in the disulfide folding pathways of cystine knot peptides. Letters in Peptide Science, 10 (5-6), 523-531. doi: 10.1007/BF02442584
2003
Journal Article
Microcin J25 has a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone
Rosengren, K. J., Clark, R. J., Daly, N. L., Goransson, U., Jones, A. and Craik, D. J. (2003). Microcin J25 has a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone. Journal of the American Chemical Society, 125 (41), 12464-12474. doi: 10.1021/JA0367703
2002
Journal Article
A sponge allelochemical induces ascidian settlement but inhibits metamorphosis
Green, K. M., Russell, B. D., Clark, R. J., Jones, M. K ., Garson, M. J., Skilleter, G. A. and Degnan, B. M. (2002). A sponge allelochemical induces ascidian settlement but inhibits metamorphosis. Marine Biology, 140 (2), 355-363. doi: 10.1007/s002270100698
2002
Conference Publication
Sponge allelochemical induces ascidian development but inhibits metamorphosis
Green, K., Russell, B. D., Clark, R., Jones, M. K., Skilleter, G. A., Garson, M. J. and Degnan, B. M. (2002). Sponge allelochemical induces ascidian development but inhibits metamorphosis. 23rd International Conference on Natural Products, Italy, July, 2002.
2001
Journal Article
Discovery and structures of the cyclotides: novel macrocyclic peptides from plants
Craik, David J., Anderson, Marilyn A., Barry, Daniel G., Clark, Richard J., Daly, Norelle L., Jennings, Cameron V. and Mulvenna, Jason P. (2001). Discovery and structures of the cyclotides: novel macrocyclic peptides from plants. Letters in Peptide Science, 8 (3-5), 119-128. doi: 10.1007/BF02446507
2001
Journal Article
Antifungal alkyl amino alcohols from the tropical marine sponge Haliclona n. sp.
Clark, R. J., Garson, M. J. and Hooper, J. N. A. (2001). Antifungal alkyl amino alcohols from the tropical marine sponge Haliclona n. sp.. Journal of Natural Products, 64 (12), 1568-1571. doi: 10.1021/np010246x
2001
Conference Publication
Sponge allelochemical induces ascidian development but inhibits metamorphosis
Clark, R. J., Degnan, B. M., Garson, M. J., Green, K. M., Jones, M. K., Russell, B. D. and Skilleter, G. A. (2001). Sponge allelochemical induces ascidian development but inhibits metamorphosis. The World Chemistry Congress 2001, Brisbane, Australia, 106 July 2001.
2001
Conference Publication
Sponge alleleochemical induces ascidian settlement but inhibits metamorphosis
Green, K., Russell, B. D., Clark, R. J., Jones, M. K., Skilleter, G. A., Garson, M. J. and Degnan, B. M. (2001). Sponge alleleochemical induces ascidian settlement but inhibits metamorphosis. 3rd IUPAC International Conference on Biodiversity, Turkey, 2001. Antalya, Turkey:
2000
Journal Article
Vinylfurans revisited: A new sesquiterpene from Euryspongia deliculata (vol 62, pg 915, 1999)
Clark, Richard J., Garson, Mary J., Brereton, Ian M. and Kennedy, John A. (2000). Vinylfurans revisited: A new sesquiterpene from Euryspongia deliculata (vol 62, pg 915, 1999). Journal of Natural Products, 63 (7), 1046-1046. doi: 10.1021/np0001934
2000
Journal Article
New Isocyano and Isothiocyanato Terpene Metabolites from the Tropical Marine Sponge Acanthella cavernosa
Clark, Richard J., Stapleton, Bronwin L. and Garson, Mary J. (2000). New Isocyano and Isothiocyanato Terpene Metabolites from the Tropical Marine Sponge Acanthella cavernosa. Tetrahedron, 56 (19), 3071-3076. doi: 10.1016/S0040-4020(00)00226-X
2000
Conference Publication
Marine ecology: The natural approach to finding bioactives
Garson, M. J., Blunt, J. W., Clark, R., Degnan, B. M., Green, K. M., Munro, M. H., Simpson, J. and Skilleter, G. A. (2000). Marine ecology: The natural approach to finding bioactives. Australasian Biotechnological Association Conference, Brisbane, 2-6 July, 2000.
2000
Other Outputs
The chemistry and chemical ecology of marine sponges
Clark, Richard James (2000). The chemistry and chemical ecology of marine sponges. PhD Thesis, School of Molecular and Microbial Sciences, The University of Queensland. doi: 10.14264/365926
2000
Conference Publication
Sponge allelochemical induces ascidian development but inhibits metamorphosis
Green, K. M., Russell, B. D., Clark, R., Jones, M. K., Skilleter, G. A., Garson, M. J. and Degnan, B. M. (2000). Sponge allelochemical induces ascidian development but inhibits metamorphosis. Pacifichem 2000, Honolulu, Hawaii, USA, 14-19 December, 2000.
Funding
Current funding
Past funding
Supervision
Availability
- Associate Professor Richard Clark is:
- Available for supervision
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Available projects
-
Designing novel conotoxins with therapeutic potential
Conotoxins, with their exquisite specificity and potency have recently created much excitement as drug leads for the treatment of chronic pain. For example, the conotoxin MVIIA (also known as Ziconotide or Prialt) has been approved for use in the U.S. and Europe for the treatment of pain and several other conotoxins have entered clinical trials. In addition, a number of conotoxins have played a critical role in dissecting the molecular mechanisms of ion channel and transporter functions in the nervous system.
There are projects available in the design of novel conotoxins that target specific receptors involved in pain.
-
Development of stable peptide-based drugs for the treatment of iron disorders
Hepcidin is the principal iron-regulatory hormone and the key mediator of iron overload (haemochromatosis) and anaemia of inflammation. This research project involves two development streams of peptide design, synthesis and structure/function analysis. The first stream will focus on the specific residues important for biological activity of hepcidin and the mutation of these residues to improve activity. The second stream will involve the development of stabilised analogues of native hepcidin. The two streams will coalesce during the final round of development to produce a series of novel cyclic hepcidin drug leads.
Supervision history
Current supervision
-
Doctor Philosophy
Making peptide drugs orally bioavailable
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
Doctor Philosophy
Design and development of peptide ligands targeting the complement system
Principal Advisor
Other advisors: Professor Trent Woodruff
-
Doctor Philosophy
Novel long-acting and orally delivered conotoxin-based peptides with both analgesic efficacy and disease modifying potential
Associate Advisor
Other advisors: Dr Andy Kuo, Emeritus Professor Maree Smith
-
Doctor Philosophy
Preclinical evaluation of complement receptor targeted drugs for neurological disease
Associate Advisor
Other advisors: Dr John Lee, Dr Vinod Kumar, Professor Trent Woodruff
Completed supervision
-
2022
Doctor Philosophy
Design and Development of Peptides Targeting the C5a-C5aR Interaction
Principal Advisor
Other advisors: Professor Trent Woodruff, Associate Professor Johan Rosengren
-
2020
Doctor Philosophy
Development of miniaturised alpha-conotoxins for the treatment of pain
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
2019
Doctor Philosophy
Mining helminth secretions for new classes of immune suppressing drugs
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
2018
Doctor Philosophy
Development of Peptide Therapeutics for Iron Disorders
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
2014
Doctor Philosophy
Marine natural wonders and the beginning of their journey towards the pharmaceutical market
Principal Advisor
Other advisors: Professor David Craik
-
2024
Master Philosophy
The Structural and Functional Role of Post-translational Modification in the µ-Conotoxins
Associate Advisor
Other advisors: Dr Anne Conibear, Associate Professor Johan Rosengren
-
2024
Doctor Philosophy
A novel cyclic peptide scaffold for drug design applications
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2022
Doctor Philosophy
Structural Studies of Peptides Buried within Seed Storage Proteins
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2022
Doctor Philosophy
Preclinical development of complement C5aR1 antagonists for the treatment of inflammatory bowel disease
Associate Advisor
Other advisors: Dr John Lee, Dr Vinod Kumar, Dr Felicity Han, Professor Trent Woodruff
-
2021
Doctor Philosophy
Investigating the Immunopharmacology of the Complement C5a Receptors, C5aR1 and C5aR2
Associate Advisor
Other advisors: Dr John Lee, Professor Mark Blaskovich, Professor Trent Woodruff
-
2020
Doctor Philosophy
Targeting of relaxin-3 analogues to the brain for pharmacological modulation of neurosignalling
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2019
Doctor Philosophy
Expanding the Structural Atlas of Peptide Toxins
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2017
Doctor Philosophy
Structural insights into cyclic plant peptides and their albumin precursors
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2015
Doctor Philosophy
The Science and Business of Novel Therapeutics: The Need for a Complete Picture
Associate Advisor
Other advisors: Professor Damian Hine, Professor David Craik
-
2012
Doctor Philosophy
PEPLINK: A Fragment-Based Method for Screening Peptides as Drug Leads
Associate Advisor
Other advisors: Professor David Craik
-
2011
Doctor Philosophy
Design and discovery of cyclic peptides with applications in drug development
Associate Advisor
Other advisors: Professor David Craik
-
2010
Doctor Philosophy
The story of a-conotoxins, Vc1.1 and RgIA, on their journey to becoming therapeutics
Associate Advisor
Other advisors: Professor David Craik
Media
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