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Associate Professor Richard Clark
Associate Professor

Richard Clark

Email: 
Phone: 
+61 7 336 51527

Overview

Background

Dr Clark is a Senior Lecturer at the School of Biomedical Sciences where he is Head of the Peptide Chemical Biology Lab. He completed his PhD in 2000 at the UQ Chemistry Department studying marine natural products chemistry and chemical ecology with Prof. Mary Garson. He then shifted his research focus towards peptide chemistry, structural biology and drug design when he was recruited to the lab of Prof. David Craik at the IMB. His current research focus is the development of technologies to stabilise peptide therapeutics and the elucidation of the structure/function activity of bioactive peptides.

Availability

Associate Professor Richard Clark is:
Available for supervision

Qualifications

  • Bachelor (Honours) of Science (Advanced), University of Tasmania
  • Doctor of Philosophy, The University of Queensland

Works

Search Professor Richard Clark’s works on UQ eSpace

163 works between 1998 and 2024

121 - 140 of 163 works

2008

Book Chapter

Structure-based Drug Design and NMR-based screening

Craik, D. J. and Clark, R. J. (2008). Structure-based Drug Design and NMR-based screening. Pharmacology from drug development to gene therapy. (pp. 225-313) edited by R. A. Meyers. Weinheim: Wiley-VCH Verlag GMBH & Co.

Structure-based Drug Design and NMR-based screening

2008

Journal Article

Utlra-stable peptide scaffolds for protein engineering synthesis and folding of the circular cystine knotted cyclotide cycloviolacin O2

Aboye, T, Clark, Richard J., Craik, David J. and Goransson, U (2008). Utlra-stable peptide scaffolds for protein engineering synthesis and folding of the circular cystine knotted cyclotide cycloviolacin O2. ChemBioChem, 9 (1), 103-113. doi: 10.1002/cbic.200700357

Utlra-stable peptide scaffolds for protein engineering synthesis and folding of the circular cystine knotted cyclotide cycloviolacin O2

2007

Journal Article

Are alpha 9 alpha 10 nicotinic acetylcholine receptors a pain target for alpha-conotoxins?

Nevin, Simon T., Clark, Richard J., Klimis, H., Christie, M. J., Craik, David J. and Adams, David J. (2007). Are alpha 9 alpha 10 nicotinic acetylcholine receptors a pain target for alpha-conotoxins?. Molecular Pharmacology, 72 (6), 1406-1410. doi: 10.1124/mol.107.040568

Are alpha 9 alpha 10 nicotinic acetylcholine receptors a pain target for alpha-conotoxins?

2007

Journal Article

Structure of alpha-conotoxin BuIA: Influences of disulfide connectivity on structural dynamics

Jin, Ai-Hua, Brandstaetter, Hemma, Nevin, Simon T., Tan, Chia Chia, Clark, Richard J., Adams, David J., Alewood, Paul F., Craik, David J. and Daly, Norelle L. (2007). Structure of alpha-conotoxin BuIA: Influences of disulfide connectivity on structural dynamics. BMC Structural Biology, 7 (28) 28, 1-13. doi: 10.1186/1472-6807-7-28

Structure of alpha-conotoxin BuIA: Influences of disulfide connectivity on structural dynamics

2007

Journal Article

The cyclotide fingerprint in Oldenlandia affinis: Elucidation of chemically modified, linear and novel macrocyclic peptides

Plan, M. R. R, Goransson, U, Clark, R. J, Daly, N. L, Colgrave, M. L and Craik, D.J (2007). The cyclotide fingerprint in Oldenlandia affinis: Elucidation of chemically modified, linear and novel macrocyclic peptides. Chembiochem, 8 (9), 1001-1011. doi: 10.1002/cbic.200700097

The cyclotide fingerprint in Oldenlandia affinis: Elucidation of chemically modified, linear and novel macrocyclic peptides

2007

Conference Publication

Enzyme mechanism and function of a novel plant protein disulfide isomerase involved in the oxidative folding of cystine knot defence peptides

Gruber, G. W., Cemazar, M., Clark, R., Horibe, T., Renda, R., Anderson, M. A. and Craik, D. J. (2007). Enzyme mechanism and function of a novel plant protein disulfide isomerase involved in the oxidative folding of cystine knot defence peptides. 20th American-Peptide-Society Symposium, Montréal, Canada, 26-30 Jun 2007. Hoboken, N. J., U.S.: John Wiley & Sons. doi: 10.1002/bip.20783

Enzyme mechanism and function of a novel plant protein disulfide isomerase involved in the oxidative folding of cystine knot defence peptides

2007

Journal Article

A novel plant protein-disulfide isomerase involved in the oxidative folding of cystine knot defense proteins

Gruber, C. W, Cemazar, M., Clark, R. .J, Horibe, T, Renda, R. F., Anderson, M. A. and Craik, D. J. (2007). A novel plant protein-disulfide isomerase involved in the oxidative folding of cystine knot defense proteins. Journal of Biological Chemistry, 282 (28), 20435-20446. doi: 10.1074/jbc.M700018200

A novel plant protein-disulfide isomerase involved in the oxidative folding of cystine knot defense proteins

2007

Journal Article

Potential therapeutic applications of the cyclotides and related cystine knot mini-proteins

Craik, D. J, Clark, R. J and Daly, N. L (2007). Potential therapeutic applications of the cyclotides and related cystine knot mini-proteins. Expert Opinion On Investigational Drugs, 16 (5), 595-604. doi: 10.1517/13543784.16.5.595

Potential therapeutic applications of the cyclotides and related cystine knot mini-proteins

2007

Journal Article

The conserved N-terminal repeat of the plant cyclotides does not assist folding of cyclotide precursor in vitro

Gunasekera, S, Daly, NL, Clark, RJ, Simonsen, SM, Foley, FM, Saska, I, Lin, F, Wade, JD, Anderson, MA and Craik, DJ (2007). The conserved N-terminal repeat of the plant cyclotides does not assist folding of cyclotide precursor in vitro. Biopolymers, 88 (4), 540-540.

The conserved N-terminal repeat of the plant cyclotides does not assist folding of cyclotide precursor in vitro

2006

Journal Article

The Synthesis, Structural Characterization, and Receptor Specificity of the {alpha}-Conotoxin Vc1.1

Clark, Richard J., Fischer, Harald, Nevin, Simon T., Adams, David J. and Craik, David J. (2006). The Synthesis, Structural Characterization, and Receptor Specificity of the {alpha}-Conotoxin Vc1.1. Journal of Biological Chemistry, 281 (32), 23254-23263. doi: 10.1074/jbc.M604550200

The Synthesis, Structural Characterization, and Receptor Specificity of the {alpha}-Conotoxin Vc1.1

2006

Journal Article

Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif

Daly, N. L., Clark, R. J., Plan, M. R. and Craik, D. J. (2006). Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif. Biochemical Journal, 393 (Part 3), 619-626. doi: 10.1042/BJ20051371

Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif

2006

Journal Article

Structural plasticity of the cyclic-cystine-knot framework: implications for biological activity and drug design

Clark, R. J., Daly, N. L. and Craik, D. J. (2006). Structural plasticity of the cyclic-cystine-knot framework: implications for biological activity and drug design. Biochemical Journal, 394 (Part 1), 85-93. doi: 10.1042/BJ20051691

Structural plasticity of the cyclic-cystine-knot framework: implications for biological activity and drug design

2006

Journal Article

The absolute structural requirement for a proline in the P3 '-position of Bowman-Birk protease inhibitors is surmounted in the minimized SFTI-1 scaffold

Daly, N. L., Chen, Y. K., Foley, F. M., Bansal, P. S., Bharathi, R., Clark, R. J., Sommerhoff, C. P. and Craik, D. J. (2006). The absolute structural requirement for a proline in the P3 '-position of Bowman-Birk protease inhibitors is surmounted in the minimized SFTI-1 scaffold. Journal of Biological Chemistry, 281 (33), 23668-23675. doi: 10.1074/jbc.M601426200

The absolute structural requirement for a proline in the P3 '-position of Bowman-Birk protease inhibitors is surmounted in the minimized SFTI-1 scaffold

2005

Journal Article

Engineering stable peptide toxins by means of backbone cyclization: Stabilization of the alpha-conotoxin MII

Clark, R. J., Fischer, H., Dempster, L., Daly, N. L., Rosengren, K. J., Nevin, S. T., Meunier, F. A., Adams, D. J. and Craik, D. J. (2005). Engineering stable peptide toxins by means of backbone cyclization: Stabilization of the alpha-conotoxin MII. Proceedings of The National Academy of Sciences of The United States of America, 102 (39), 13767-13772. doi: 10.1073/pnas.0504613102

Engineering stable peptide toxins by means of backbone cyclization: Stabilization of the alpha-conotoxin MII

2005

Conference Publication

A novel threaded ring structure for the antimicrobial peptide microcin J25

Rosengren, KJ, Jen, FEC, Clark, RJ, Goransson, U, Daly, NL and Craik, DJ (2005). A novel threaded ring structure for the antimicrobial peptide microcin J25. Peptides 2004: 3rd International Peptide Symposium / 28th European Peptide Symposium, Prague, Czech Republic, 5 - 10 September 2004. Geneva, Switzerland: Kenes International.

A novel threaded ring structure for the antimicrobial peptide microcin J25

2005

Journal Article

Disulfide bond mutagenesis and the structure and function of the head-to-tail macrocyclic trypsin inhibitor SFTI-1

Korsinczky, M. L. J., Clark, R. J. and Craik, D. J. (2005). Disulfide bond mutagenesis and the structure and function of the head-to-tail macrocyclic trypsin inhibitor SFTI-1. Biochemistry, 44 (4), 1145-1153. doi: 10.1021/bi048297r

Disulfide bond mutagenesis and the structure and function of the head-to-tail macrocyclic trypsin inhibitor SFTI-1

2005

Book Chapter

Structure-based drug design and NMR-based screening

Craik, D. J. and Clark, R. J. (2005). Structure-based drug design and NMR-based screening. Encyclopdeia of Molecular Cell Biology and Molecular Medicine. (pp. 517-605) edited by Robert A Meyers. Germany: Wiley-VCH.

Structure-based drug design and NMR-based screening

2004

Conference Publication

A novel threaded ring structure for the antimicrobial peptide microcin J25

Craik, D. J., Rosengren, K. J., Clark, R. J., Daly, N. L. and Goransson, U. (2004). A novel threaded ring structure for the antimicrobial peptide microcin J25. 3rd International and 28th European Peptide Symposium, Prague, Czech Republic, 5–10 September 2004. West Sussex, United Kingdom: John Wiley & Sons. doi: 10.1002/psc.617

A novel threaded ring structure for the antimicrobial peptide microcin J25

2004

Conference Publication

Design, Synthesis and Structural Studies of Cyclic Alpha-Conotoxins

Clark, RJ, Dempster, L, Daly, NL, Rosengren, KJ and Craik, DJ (2004). Design, Synthesis and Structural Studies of Cyclic Alpha-Conotoxins. CHICHESTER: JOHN WILEY & SONS LTD.

Design, Synthesis and Structural Studies of Cyclic Alpha-Conotoxins

2004

Conference Publication

Cyclotides: Novel Peptidic Pesticides for Plant Protection

Plan, MR, Goransson, U, Rosengren, KJ, Clark, RJ, Daly, NL, Evert, P, Chen, C, Cagauan, AG and Craik, DJ (2004). Cyclotides: Novel Peptidic Pesticides for Plant Protection. CHICHESTER: JOHN WILEY & SONS LTD.

Cyclotides: Novel Peptidic Pesticides for Plant Protection

Funding

Current funding

  • 2024 - 2027
    Preclinical development of complement C5a receptor 2 modulators for motor neuron disease
    Cure for MND Foundation - Drug Development Grants
    Open grant
  • 2022 - 2025
    Making peptides orally bioavailable
    ARC Discovery Projects
    Open grant
  • 2022 - 2025
    Making peptide drugs orally bioavailable
    NHMRC IDEAS Grants
    Open grant
  • 2022 - 2025
    Novel long-acting and orally delivered conotoxin-based peptides with both analgesic efficacy and disease modifying potential
    NHMRC Development Grant
    Open grant

Past funding

  • 2022 - 2024
    Developing novel acid-sensing ion channel inhibitors as neuroprotective leads and diagnostic agents for multiple sclerosis
    Multiple Sclerosis Research Australia - Targeted Grant - Neurodegeneration
    Open grant
  • 2021 - 2023
    Complement C5aR1: A novel therapeutic target for brain cancer
    Brain Cancer Innovation Project Grants
    Open grant
  • 2020 - 2022
    Neuroprotective role of novel acid-sensing ion channel inhibitor in Multiple sclerosis (MS) disease
    Multiple Sclerosis Research Australia
    Open grant
  • 2020 - 2024
    Preclinical development of centrally active complement C3a receptor modulators as disease-modifying drugs for motor neuron disease
    Cure for MND Foundation - Drug Development Grants
    Open grant
  • 2019
    A versatile accurate mass, high resolution QTOF mass spectrometer for chemistry and proteomic applications
    UQ Major Equipment and Infrastructure
    Open grant
  • 2019
    Chemical Purification Network
    UQ Major Equipment and Infrastructure
    Open grant
  • 2018
    Multichannel peptide synthesiser to accelerate UQ's biodiscovery pipeline and peptide drug development programs
    UQ Major Equipment and Infrastructure
    Open grant
  • 2017 - 2018
    A Pharmacology Screening Facility to Accelerate Drug Discovery and Development
    UQ Major Equipment and Infrastructure
    Open grant
  • 2017 - 2019
    Hormone transplant by alpha-2-macroglubulin: Novel roles in regulating hormone activity (NHMRC Project Grant led by the University of Sydney)
    University of Sydney
    Open grant
  • 2017 - 2021
    Preclinical Development of Complement C5aR Antagonists for the Treatment of Motor Neuron Disease
    NHMRC Development Grant
    Open grant
  • 2016 - 2017
    Development of complement C5aR1 antagonists for the treatment of motor neuron disease
    UQ Collaboration and Industry Engagement Fund - FirstLink
    Open grant
  • 2016
    Integrative blood coagulation research core facility
    UQ Major Equipment and Infrastructure
    Open grant
  • 2016
    Patch-clamp electrophysiology platform for drug and insecticide discovery
    UQ Major Equipment and Infrastructure
    Open grant
  • 2014 - 2016
    Better treatments for chronic pain
    NHMRC Development Grant
    Open grant
  • 2012 - 2015
    Elucidating the mechanisms of alpha-conotoxin-induced calcium channel inhibition via G protein-coupled receptors (NHMRC project grant administered by Royal Melbourne Institute of Technology)
    Royal Melbourne Institute of Technology University
    Open grant
  • 2011 - 2012
    Elucidating the neuroprotective properties of alpha-conotoxins
    UQ New Staff Research Start-Up Fund
    Open grant
  • 2011 - 2015
    Development of effective peptide-based drugs
    ARC Future Fellowships
    Open grant
  • 2011
    A Multi-Channel Fluorescence Plate Reader for Studying Receptor-Ligand Interactions
    NHMRC Equipment Grant
    Open grant
  • 2011
    Building UQ's analytical capacity in biomedical sciences
    UQ Major Equipment and Infrastructure
    Open grant
  • 2011 - 2014
    Understanding the structure/function relationships of the iron regulatory peptide hepcidin
    NHMRC Project Grant
    Open grant
  • 2010 - 2012
    A new G-protein coupled receptor target for conotoxins
    ARC Discovery Projects
    Open grant
  • 2010 - 2012
    New peptide-based drugs for the treatment of neuropathic pain
    NHMRC Project Grant
    Open grant
  • 2010
    The development of peptides (mini-proteins) as drugs: improved purification capability
    UQ Major Equipment and Infrastructure
    Open grant
  • 2009 - 2021
    Cone Shell snail venom research
    The Simon Axelsen Memorial Fund
    Open grant
  • 2008 - 2011
    NHMRC Career Development Award (Biomedical - Level 1): Development of effective peptide-based drugs
    NHMRC Career Development Award
    Open grant
  • 2008 - 2010
    Development of a novel orally active peptide for the treatment of pain
    NHMRC Development Grant
    Open grant
  • 2008 - 2010
    Discovery of novel cyclotides.
    Department of Innovation, Industry, Science and Research
    Open grant
  • 2007
    Exploring the therapeutic potential of a novel family of proteins
    Australian Academy of Science
    Open grant
  • 2007 - 2010
    Development of a generic strategy for the stabilisation of peptide-based therapeutics
    NHMRC Project Grant
    Open grant
  • 2007 - 2008
    Development of stable peptide-based drugs for the treatment of iron disorders
    UQ Early Career Researcher
    Open grant
  • 2007
    Molecular imprinting of circular proteins
    UQ Travel Grants Scheme
    Open grant

Supervision

Availability

Associate Professor Richard Clark is:
Available for supervision

Before you email them, read our advice on how to contact a supervisor.

Available projects

  • Designing novel conotoxins with therapeutic potential

    Conotoxins, with their exquisite specificity and potency have recently created much excitement as drug leads for the treatment of chronic pain. For example, the conotoxin MVIIA (also known as Ziconotide or Prialt) has been approved for use in the U.S. and Europe for the treatment of pain and several other conotoxins have entered clinical trials. In addition, a number of conotoxins have played a critical role in dissecting the molecular mechanisms of ion channel and transporter functions in the nervous system.

    There are projects available in the design of novel conotoxins that target specific receptors involved in pain.

  • Development of stable peptide-based drugs for the treatment of iron disorders

    Hepcidin is the principal iron-regulatory hormone and the key mediator of iron overload (haemochromatosis) and anaemia of inflammation. This research project involves two development streams of peptide design, synthesis and structure/function analysis. The first stream will focus on the specific residues important for biological activity of hepcidin and the mutation of these residues to improve activity. The second stream will involve the development of stabilised analogues of native hepcidin. The two streams will coalesce during the final round of development to produce a series of novel cyclic hepcidin drug leads.

Supervision history

Current supervision

Completed supervision

Media

Enquiries

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