
Overview
Background
Dr Clark is a Senior Lecturer at the School of Biomedical Sciences where he is Head of the Peptide Chemical Biology Lab. He completed his PhD in 2000 at the UQ Chemistry Department studying marine natural products chemistry and chemical ecology with Prof. Mary Garson. He then shifted his research focus towards peptide chemistry, structural biology and drug design when he was recruited to the lab of Prof. David Craik at the IMB. His current research focus is the development of technologies to stabilise peptide therapeutics and the elucidation of the structure/function activity of bioactive peptides.
Availability
- Associate Professor Richard Clark is:
- Available for supervision
Fields of research
Qualifications
- Bachelor (Honours) of Science (Advanced), University of Tasmania
- Doctor of Philosophy, The University of Queensland
Works
Search Professor Richard Clark’s works on UQ eSpace
2008
Book Chapter
Structure-based Drug Design and NMR-based screening
Craik, D. J. and Clark, R. J. (2008). Structure-based Drug Design and NMR-based screening. Pharmacology from drug development to gene therapy. (pp. 225-313) edited by R. A. Meyers. Weinheim: Wiley-VCH Verlag GMBH & Co.
2008
Journal Article
Utlra-stable peptide scaffolds for protein engineering synthesis and folding of the circular cystine knotted cyclotide cycloviolacin O2
Aboye, T, Clark, Richard J., Craik, David J. and Goransson, U (2008). Utlra-stable peptide scaffolds for protein engineering synthesis and folding of the circular cystine knotted cyclotide cycloviolacin O2. ChemBioChem, 9 (1), 103-113. doi: 10.1002/cbic.200700357
2007
Journal Article
Are alpha 9 alpha 10 nicotinic acetylcholine receptors a pain target for alpha-conotoxins?
Nevin, Simon T., Clark, Richard J., Klimis, H., Christie, M. J., Craik, David J. and Adams, David J. (2007). Are alpha 9 alpha 10 nicotinic acetylcholine receptors a pain target for alpha-conotoxins?. Molecular Pharmacology, 72 (6), 1406-1410. doi: 10.1124/mol.107.040568
2007
Journal Article
Structure of alpha-conotoxin BuIA: Influences of disulfide connectivity on structural dynamics
Jin, Ai-Hua, Brandstaetter, Hemma, Nevin, Simon T., Tan, Chia Chia, Clark, Richard J., Adams, David J., Alewood, Paul F., Craik, David J. and Daly, Norelle L. (2007). Structure of alpha-conotoxin BuIA: Influences of disulfide connectivity on structural dynamics. BMC Structural Biology, 7 (28) 28, 1-13. doi: 10.1186/1472-6807-7-28
2007
Journal Article
The cyclotide fingerprint in Oldenlandia affinis: Elucidation of chemically modified, linear and novel macrocyclic peptides
Plan, M. R. R, Goransson, U, Clark, R. J, Daly, N. L, Colgrave, M. L and Craik, D.J (2007). The cyclotide fingerprint in Oldenlandia affinis: Elucidation of chemically modified, linear and novel macrocyclic peptides. Chembiochem, 8 (9), 1001-1011. doi: 10.1002/cbic.200700097
2007
Conference Publication
Enzyme mechanism and function of a novel plant protein disulfide isomerase involved in the oxidative folding of cystine knot defence peptides
Gruber, G. W., Cemazar, M., Clark, R., Horibe, T., Renda, R., Anderson, M. A. and Craik, D. J. (2007). Enzyme mechanism and function of a novel plant protein disulfide isomerase involved in the oxidative folding of cystine knot defence peptides. 20th American-Peptide-Society Symposium, Montréal, Canada, 26-30 Jun 2007. Hoboken, N. J., U.S.: John Wiley & Sons. doi: 10.1002/bip.20783
2007
Journal Article
A novel plant protein-disulfide isomerase involved in the oxidative folding of cystine knot defense proteins
Gruber, C. W, Cemazar, M., Clark, R. .J, Horibe, T, Renda, R. F., Anderson, M. A. and Craik, D. J. (2007). A novel plant protein-disulfide isomerase involved in the oxidative folding of cystine knot defense proteins. Journal of Biological Chemistry, 282 (28), 20435-20446. doi: 10.1074/jbc.M700018200
2007
Journal Article
Potential therapeutic applications of the cyclotides and related cystine knot mini-proteins
Craik, D. J, Clark, R. J and Daly, N. L (2007). Potential therapeutic applications of the cyclotides and related cystine knot mini-proteins. Expert Opinion On Investigational Drugs, 16 (5), 595-604. doi: 10.1517/13543784.16.5.595
2007
Journal Article
The conserved N-terminal repeat of the plant cyclotides does not assist folding of cyclotide precursor in vitro
Gunasekera, S, Daly, NL, Clark, RJ, Simonsen, SM, Foley, FM, Saska, I, Lin, F, Wade, JD, Anderson, MA and Craik, DJ (2007). The conserved N-terminal repeat of the plant cyclotides does not assist folding of cyclotide precursor in vitro. Biopolymers, 88 (4), 540-540.
2006
Journal Article
The Synthesis, Structural Characterization, and Receptor Specificity of the {alpha}-Conotoxin Vc1.1
Clark, Richard J., Fischer, Harald, Nevin, Simon T., Adams, David J. and Craik, David J. (2006). The Synthesis, Structural Characterization, and Receptor Specificity of the {alpha}-Conotoxin Vc1.1. Journal of Biological Chemistry, 281 (32), 23254-23263. doi: 10.1074/jbc.M604550200
2006
Journal Article
Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif
Daly, N. L., Clark, R. J., Plan, M. R. and Craik, D. J. (2006). Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif. Biochemical Journal, 393 (Part 3), 619-626. doi: 10.1042/BJ20051371
2006
Journal Article
Structural plasticity of the cyclic-cystine-knot framework: implications for biological activity and drug design
Clark, R. J., Daly, N. L. and Craik, D. J. (2006). Structural plasticity of the cyclic-cystine-knot framework: implications for biological activity and drug design. Biochemical Journal, 394 (Part 1), 85-93. doi: 10.1042/BJ20051691
2006
Journal Article
The absolute structural requirement for a proline in the P3 '-position of Bowman-Birk protease inhibitors is surmounted in the minimized SFTI-1 scaffold
Daly, N. L., Chen, Y. K., Foley, F. M., Bansal, P. S., Bharathi, R., Clark, R. J., Sommerhoff, C. P. and Craik, D. J. (2006). The absolute structural requirement for a proline in the P3 '-position of Bowman-Birk protease inhibitors is surmounted in the minimized SFTI-1 scaffold. Journal of Biological Chemistry, 281 (33), 23668-23675. doi: 10.1074/jbc.M601426200
2005
Journal Article
Engineering stable peptide toxins by means of backbone cyclization: Stabilization of the alpha-conotoxin MII
Clark, R. J., Fischer, H., Dempster, L., Daly, N. L., Rosengren, K. J., Nevin, S. T., Meunier, F. A., Adams, D. J. and Craik, D. J. (2005). Engineering stable peptide toxins by means of backbone cyclization: Stabilization of the alpha-conotoxin MII. Proceedings of The National Academy of Sciences of The United States of America, 102 (39), 13767-13772. doi: 10.1073/pnas.0504613102
2005
Conference Publication
A novel threaded ring structure for the antimicrobial peptide microcin J25
Rosengren, KJ, Jen, FEC, Clark, RJ, Goransson, U, Daly, NL and Craik, DJ (2005). A novel threaded ring structure for the antimicrobial peptide microcin J25. Peptides 2004: 3rd International Peptide Symposium / 28th European Peptide Symposium, Prague, Czech Republic, 5 - 10 September 2004. Geneva, Switzerland: Kenes International.
2005
Journal Article
Disulfide bond mutagenesis and the structure and function of the head-to-tail macrocyclic trypsin inhibitor SFTI-1
Korsinczky, M. L. J., Clark, R. J. and Craik, D. J. (2005). Disulfide bond mutagenesis and the structure and function of the head-to-tail macrocyclic trypsin inhibitor SFTI-1. Biochemistry, 44 (4), 1145-1153. doi: 10.1021/bi048297r
2005
Book Chapter
Structure-based drug design and NMR-based screening
Craik, D. J. and Clark, R. J. (2005). Structure-based drug design and NMR-based screening. Encyclopdeia of Molecular Cell Biology and Molecular Medicine. (pp. 517-605) edited by Robert A Meyers. Germany: Wiley-VCH.
2004
Conference Publication
A novel threaded ring structure for the antimicrobial peptide microcin J25
Craik, D. J., Rosengren, K. J., Clark, R. J., Daly, N. L. and Goransson, U. (2004). A novel threaded ring structure for the antimicrobial peptide microcin J25. 3rd International and 28th European Peptide Symposium, Prague, Czech Republic, 5–10 September 2004. West Sussex, United Kingdom: John Wiley & Sons. doi: 10.1002/psc.617
2004
Conference Publication
Design, Synthesis and Structural Studies of Cyclic Alpha-Conotoxins
Clark, RJ, Dempster, L, Daly, NL, Rosengren, KJ and Craik, DJ (2004). Design, Synthesis and Structural Studies of Cyclic Alpha-Conotoxins. CHICHESTER: JOHN WILEY & SONS LTD.
2004
Conference Publication
Cyclotides: Novel Peptidic Pesticides for Plant Protection
Plan, MR, Goransson, U, Rosengren, KJ, Clark, RJ, Daly, NL, Evert, P, Chen, C, Cagauan, AG and Craik, DJ (2004). Cyclotides: Novel Peptidic Pesticides for Plant Protection. CHICHESTER: JOHN WILEY & SONS LTD.
Funding
Current funding
Past funding
Supervision
Availability
- Associate Professor Richard Clark is:
- Available for supervision
Before you email them, read our advice on how to contact a supervisor.
Available projects
-
Designing novel conotoxins with therapeutic potential
Conotoxins, with their exquisite specificity and potency have recently created much excitement as drug leads for the treatment of chronic pain. For example, the conotoxin MVIIA (also known as Ziconotide or Prialt) has been approved for use in the U.S. and Europe for the treatment of pain and several other conotoxins have entered clinical trials. In addition, a number of conotoxins have played a critical role in dissecting the molecular mechanisms of ion channel and transporter functions in the nervous system.
There are projects available in the design of novel conotoxins that target specific receptors involved in pain.
-
Development of stable peptide-based drugs for the treatment of iron disorders
Hepcidin is the principal iron-regulatory hormone and the key mediator of iron overload (haemochromatosis) and anaemia of inflammation. This research project involves two development streams of peptide design, synthesis and structure/function analysis. The first stream will focus on the specific residues important for biological activity of hepcidin and the mutation of these residues to improve activity. The second stream will involve the development of stabilised analogues of native hepcidin. The two streams will coalesce during the final round of development to produce a series of novel cyclic hepcidin drug leads.
Supervision history
Current supervision
-
Doctor Philosophy
Design and development of peptide ligands targeting the complement system
Principal Advisor
Other advisors: Professor Trent Woodruff
-
Doctor Philosophy
Making peptide drugs orally bioavailable
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
Doctor Philosophy
Preclinical evaluation of complement receptor targeted drugs for neurological disease
Associate Advisor
Other advisors: Dr John Lee, Dr Vinod Kumar, Professor Trent Woodruff
-
Doctor Philosophy
Novel long-acting and orally delivered conotoxin-based peptides with both analgesic efficacy and disease modifying potential
Associate Advisor
Other advisors: Dr Andy Kuo, Emeritus Professor Maree Smith
Completed supervision
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2022
Doctor Philosophy
Design and Development of Peptides Targeting the C5a-C5aR Interaction
Principal Advisor
Other advisors: Professor Trent Woodruff, Associate Professor Johan Rosengren
-
2020
Doctor Philosophy
Development of miniaturised alpha-conotoxins for the treatment of pain
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
2019
Doctor Philosophy
Mining helminth secretions for new classes of immune suppressing drugs
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
2018
Doctor Philosophy
Development of Peptide Therapeutics for Iron Disorders
Principal Advisor
Other advisors: Associate Professor Johan Rosengren
-
2014
Doctor Philosophy
Marine natural wonders and the beginning of their journey towards the pharmaceutical market
Principal Advisor
Other advisors: Professor David Craik
-
2024
Master Philosophy
The Structural and Functional Role of Post-translational Modification in the µ-Conotoxins
Associate Advisor
Other advisors: Dr Anne Conibear, Associate Professor Johan Rosengren
-
2024
Doctor Philosophy
A novel cyclic peptide scaffold for drug design applications
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2022
Doctor Philosophy
Structural Studies of Peptides Buried within Seed Storage Proteins
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2022
Doctor Philosophy
Preclinical development of complement C5aR1 antagonists for the treatment of inflammatory bowel disease
Associate Advisor
Other advisors: Dr John Lee, Dr Vinod Kumar, Dr Felicity Han, Professor Trent Woodruff
-
2021
Doctor Philosophy
Investigating the Immunopharmacology of the Complement C5a Receptors, C5aR1 and C5aR2
Associate Advisor
Other advisors: Dr John Lee, Professor Mark Blaskovich, Professor Trent Woodruff
-
2020
Doctor Philosophy
Targeting of relaxin-3 analogues to the brain for pharmacological modulation of neurosignalling
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2019
Doctor Philosophy
Expanding the Structural Atlas of Peptide Toxins
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2017
Doctor Philosophy
Structural insights into cyclic plant peptides and their albumin precursors
Associate Advisor
Other advisors: Associate Professor Johan Rosengren
-
2015
Doctor Philosophy
The Science and Business of Novel Therapeutics: The Need for a Complete Picture
Associate Advisor
Other advisors: Professor Damian Hine, Professor David Craik
-
2012
Doctor Philosophy
PEPLINK: A Fragment-Based Method for Screening Peptides as Drug Leads
Associate Advisor
Other advisors: Professor David Craik
-
2011
Doctor Philosophy
Design and discovery of cyclic peptides with applications in drug development
Associate Advisor
Other advisors: Professor David Craik
-
2010
Doctor Philosophy
The story of a-conotoxins, Vc1.1 and RgIA, on their journey to becoming therapeutics
Associate Advisor
Other advisors: Professor David Craik
Media
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