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2026 Journal Article IL-33/IL1RL1 (ST2) signalling drives immune suppression in squamous intraepithelial hyperplasiaZhou, Chenhao, Gonzalez Cruz, Jazmina, Teoh, Siok Min, Tran, Minh, Goh, Denise, Narayanan, Divyaa, Tan, Xiao, Dang, Thi Viet Trinh, Tuong, Zewen Kelvin, Gillinder, Kevin, Bashaw, Abate, Wells, James W., Frazer, Ian H., Nguyen, Quan, Chen, Yu, Yu, Meihua and Chandra, Janin (2026). IL-33/IL1RL1 (ST2) signalling drives immune suppression in squamous intraepithelial hyperplasia. Tumour Virus Research, 22 200350, 200350. doi: 10.1016/j.tvr.2026.200350 |
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2026 Journal Article Spatial transcriptomics and histopathological analyses reveal potential biomarkers and immune features linked to recurrence in head and neck cancerWeeramange, Chameera Ekanayake, Chen, Yibi, Nguyen, Kym-Mai, Zhang, Xi, Hartel, Gunter, Causer, Andrew, Mulay, Onkar, Pavithra, Prakrithi, Lam, Pui Yeng, Gonzalez Cruz, Jazmina, Vasani, Sarju, Kenny, Lizbeth, Taheri, Touraj, Breik, Omar, Nguyen, Quan and Punyadeera, Chamindie (2026). Spatial transcriptomics and histopathological analyses reveal potential biomarkers and immune features linked to recurrence in head and neck cancer. Frontiers in Immunology, 17 1713732, 1-16. doi: 10.3389/fimmu.2026.1713732 |
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2026 Journal Article Genetic Ablation and Multi‐Omics Profiling Reveal CEP55 as a Key Driver of Tumorigenesis in Diverse Cancer ModelsRashidieh, Behnam, Yang, Yuanhao, Bain, Amanda Louise, Theron, Phillip, Vosloo, Catharina, Keshvari, Sahar, Ahangar, Parinaz, Bowden, Brydie, Tria, Simon M., Wang, Ben B., Isenmann, Sandra, van Holthe, Nicholas J. Westra, Xiong, Zherui, Vu, Hani, Sharma, Sowmya, Sengal, Asmerom, Lopez, J. Alejandro, Finnie, John, Papa, Antonella, Duijf, Pascal H.G., Nguyen, Quan, Apaja, Pirjo M. and Khanna, Kum Kum (2026). Genetic Ablation and Multi‐Omics Profiling Reveal CEP55 as a Key Driver of Tumorigenesis in Diverse Cancer Models. Advanced Science e76782, e76782-e76782. doi: 10.1002/advs.76782 |
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2026 Conference Publication Using spatial transcriptomics to interrogate the ductular reaction and progressive fibrosis in metabolic dysfunction-associated steatotic liver diseaseYuan, Lucy, Li, Chaoyi, Xiong, Zherui, Goode, Elizabeth, Clouston, Andrew, Nguyen, Quan, Powell, Elizabeth and Irvine, Katharine (2026). Using spatial transcriptomics to interrogate the ductular reaction and progressive fibrosis in metabolic dysfunction-associated steatotic liver disease. Unknown, Unknown, Unknown. Richmond, VIC Australia: John Wiley & Sons. |
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2026 Journal Article SpaMTP: integrative statistical analysis and visualization of spatial metabolomics and transcriptomics dataCauser, Andrew, Lu, Tianyao, Kriel, Jurgen, Moffet, Joel J. D., Fitzgerald, Christopher C. J., Newman, Andrew, Vu, Hani, Tan, Xiao, Vo, Tuan, Cui, Cedric, Narayana, Vinod K., Whittle, James R., Best, Sarah A., Freytag, Saskia and Nguyen, Quan (2026). SpaMTP: integrative statistical analysis and visualization of spatial metabolomics and transcriptomics data. Nature Methods, 23 (8), 1501-1506. doi: 10.1038/s41592-026-03140-8 |
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2026 Journal Article VN1K is a pangenome-informed multi-omics and phenomics resource for the Vietnamese populationTran, Trang T. H., Hoang, Tham H., Tran, Mai H., Pham, Tien M., Nguyen, Nam N., Vu, Giang M., Duong, Vinh C., Vu, Quang T., Nguyen, Nguyen T., Vu, Hien Q., Nguyen, Trang M., Nguyen, Thien K., Nguyen, Sang V., Dang, Toan, Nguyen, Hoang, Do, Tuan, Le, Cuong, Nguyen, Dat T., Nguyen, Hung T. T., Le, Nam Q., Nguyen, Quang-Huy, Le, Linh T., Pham, Thang, Vu, Duc M., Le, Huong T. T., Ngo, Tho D., Nguyen, Liem T., Hoang, Yen, Dao, Dat X. ... Vo, Nam S. (2026). VN1K is a pangenome-informed multi-omics and phenomics resource for the Vietnamese population. Nature Communications, 17 (1) 6679. doi: 10.1038/s41467-026-75375-0 |
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2026 Journal Article Performance of deep learning methods for spatial gene expression prediction from histology images: a comprehensive assessmentXie, Jacky, Tan, Xiao, Jiang, Yuanhao, Nguyen, Hao, Ye, Nan and Nguyen, Quan (2026). Performance of deep learning methods for spatial gene expression prediction from histology images: a comprehensive assessment. Bioinformatics Advances, 6 (1) vbag202, vbag202-1. doi: 10.1093/bioadv/vbag202 |
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2026 Journal Article SpatioTemporal Omics Consortium: a global effort for biological discovery across species, space and timeLoo, Lipin, Xia, Keke, Crosetto, Nicola, Bienko, Magda, Xu, Chang, Chen, Jinmiao, Reguant, Anna Pascual, Li, Chengyu, Wang, Ji, Wei, Xiaofeng, Liu, Longqi, Liu, Shiping, Han, Lei, Legnini, Ivano, Glastonbury, Craig, Sharma, Alok, Suzuki, Yutaka, Yosef, Nir, Liu, Boxiang, Yeo, Grace, Poo, Mu-ming, Heyn, Holger, Theis, Fabian, Majumder, Partha, Mulder, Jan, Amit, Ido, Carninci, Piero, Xu, Xun, Liu, Weibin and Nguyen, Quan (2026). SpatioTemporal Omics Consortium: a global effort for biological discovery across species, space and time. Nature Methods, 23 (8), 1481-1485. doi: 10.1038/s41592-026-03150-6 |
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2026 Journal Article Myeloid HDAC7 drives liver inflammation and systemic glucose dysregulation during diet‐induced obesityWang, Yizhuo, Ramnath, Divya, Das Gupta, Kaustav, Prakrithi, P., Bisht, Kavita, Miller, Gregory C., Xiong, Zherui, Wan, Yujun, Tejo, Ellen N., Curson, James E. B., Abrol, Rishika, Keshvari, Sahar, Gunther, Kimberley S., Atkinson, Jordan D., Loh, Zhixuan, Engel, Jessica A., Engwerda, Christian R., Burgener, Sabrina Sofia, Schroder, Kate, Fairlie, David P., Clouston, Andrew D., Powell, Elizabeth E., Irvine, Katharine M., Sullivan, Mitchell A., Lévesque, Jean‐Pierre, Nguyen, Quan, Sweet, Matthew J. and Karunakaran, Denuja (2026). Myeloid HDAC7 drives liver inflammation and systemic glucose dysregulation during diet‐induced obesity. Clinical and Translational Immunology, 15 (6) e70100, 1-20. doi: 10.1002/cti2.70100 |
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2026 Journal Article Unraveling lncRNA diversity at a single cell resolution and in a spatial context across different cancer typesPrakrithi, P., Vo, Tuan, Xiong, Zherui, Vu, Hani, Nguyen, Loan T., Newman, Andrew, Wilhelmey, Julie, Whitehall, Vicki, Cruz, Jazmina L. Gonzalez, Wood, Simon, Mallett, Andrew J., Gupta, Ishaan and Nguyen, Quan (2026). Unraveling lncRNA diversity at a single cell resolution and in a spatial context across different cancer types. Nature Methods, 23 (6), 1236-1249. doi: 10.1038/s41592-026-03071-4 |
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2026 Journal Article Intra- and inter-organ communications in aging and cancer: Local and global spatial perspectivesMulay, Onkar, Benedicto, Aitor, Murata, Yui, Ng, Monica Suet Ying, Gonzalez Cruz, Jazmina L. and Nguyen, Quan (2026). Intra- and inter-organ communications in aging and cancer: Local and global spatial perspectives. Seminars in Cell and Developmental Biology, 179-180 103672, 1-15. doi: 10.1016/j.semcdb.2026.103672 |
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2026 Conference Publication Why are thick melanomas lethal? Immune exclusion underpins recurrence in stage II melanomaTan, Samuel, Muller, Nicholas, Kao, Yung-Ching, Xiong, Zherui, Zhou, Chenhao, Gavanescu, Danielle, Roy, Edwige, Whiteman, David, Lambie, Duncan, Soyer, H. Peter, Stark, Mitchell, Nguyen, Quan and Khosrotehrani, Kiarash (2026). Why are thick melanomas lethal? Immune exclusion underpins recurrence in stage II melanoma. Australasian College of Dermatologists, 58th Annual Scientific Meeting, Melbourne, VIC, Australia, 16–18 May 2026. Richmond, VIC, Australia: John Wiley & Sons. doi: 10.1111/ajd.70101 |
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2026 Journal Article Single-cell transcriptomics of bronchoalveolar lavage reveals divergent macrophage subpopulations and trajectories in interstitial lung diseaseZhang, Lai-Ying, Allen, Peter C., Lutzky, Viviana P., Apte, Simon H., Groves, Penny L., Tan, Maxine E., De Silva, Tharushi, Spenceley, Eleanor R., McCloy, Rachael A., Nguyen, Quan H., Powell, Joseph E., Chambers, Daniel C. and O’Sullivan, Brendan J. (2026). Single-cell transcriptomics of bronchoalveolar lavage reveals divergent macrophage subpopulations and trajectories in interstitial lung disease. PLOS One, 21 (4) e0347852, 1-18. doi: 10.1371/journal.pone.0347852 |
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2026 Journal Article Spatial omics for profiling the dynamic tumor microenvironmentNguyen, Hao, Eapen, Merrin Mary, Nguyen, Quan and Sharma, Ankur (2026). Spatial omics for profiling the dynamic tumor microenvironment. Clinical and Translational Immunology, 15 (4) e70084. doi: 10.1002/cti2.70084 |
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2026 Journal Article A tissue multiplexing approach to maximize spatial omics output from pathology specimensKao, Yung-Ching, Lee, Katie J., Zhou, Chenhao, Causer, Andrew, Oey, Harald, Khosrotehrani, Kiarash, O’Brien, Blake, Collins, Angus, Nguyen, Quan, Soyer, H. Peter and Stark, Mitchell S. (2026). A tissue multiplexing approach to maximize spatial omics output from pathology specimens. Frontiers in Medicine, 13 1749401, 13. doi: 10.3389/fmed.2026.1749401 |
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2026 Conference Publication Targeting CEP55 as a universal oncogenic dependency: integrating spatial multi-omics and targeted therapy across translational preclinical cancer modelsRashidieh, Behnam, Apaja, Pirjo, Nguyen, Quan, McMillan, Nigel and Khanna, Kum Kum (2026). Targeting CEP55 as a universal oncogenic dependency: integrating spatial multi-omics and targeted therapy across translational preclinical cancer models. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-6055 |
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2026 Conference Publication The genomic landscape of melanoma-prone skinLee, Katie, Kao, Yung-Ching, Smit, Darren, Saldias Montivero, Marietta K., Levy, Joshua Jay, Christensen, Brock C., Nguyen, Quan, Soyer, H. Peter and Stark, Mitchell S. (2026). The genomic landscape of melanoma-prone skin. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-1103 |
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2026 Conference Publication AI foundation model for single cell annotation from conventional histopathology images of cancerBai, Xiangqi, Lee, HoJoon, Tan, Xiao, Li, Chaoyi, Sathe, Anuja, Wang, Yan, Nguyen, Quan and Ji, Hanlee P. (2026). AI foundation model for single cell annotation from conventional histopathology images of cancer. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-5491 |
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2026 Conference Publication Precision diagnostics for early melanoma detection using spatial biology and AI guided image analysisKao, Yung-Ching, Tan, Samuel X., Tan, Xiao, Oey, Harald, Lee, Katie J., Vallius, Tuulia, Pelletier, Roxanne, Causer, Andrew, Zhou, Chenhao, Smit, Darren, O'Neill, Jade, Xiong, Albert, O'Brien, Blake, Collins, Angus, Sorger, Peter Karl, Soyer, H. Peter, Khosrotehrani, Kiarash, Nguyen, Quan and Stark, Mitchell S. (2026). Precision diagnostics for early melanoma detection using spatial biology and AI guided image analysis. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-4021 |
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2026 Journal Article Understanding heterogeneity in the pathogenesis and drug responses of ulcerative colitis through single-cell and spatial transcriptomicsPhillips, Jennifer, Tambakis, George, Kumar, Rina, Croft, Anthony, Brown, Ian, Rosty, Christophe, Anderson, Robert, Belz, Gabrielle, Oliver, Amanda J., Xiong, Albert, Nguyen, Quan, Radford-Smith, Graham and Walker, Gareth J. (2026). Understanding heterogeneity in the pathogenesis and drug responses of ulcerative colitis through single-cell and spatial transcriptomics. Frontiers in Immunology, 17 1794207, 1-21. doi: 10.3389/fimmu.2026.1794207 |
