|
2026 Journal Article IL-33/IL1RL1 (ST2) signalling drives immune suppression in squamous intraepithelial hyperplasiaZhou, Chenhao, Gonzalez Cruz, Jazmina, Teoh, Siok Min, Tran, Minh, Goh, Denise, Narayanan, Divyaa, Tan, Xiao, Dang, Thi Viet Trinh, Tuong, Zewen Kelvin, Gillinder, Kevin, Bashaw, Abate, Wells, James W., Frazer, Ian H., Nguyen, Quan, Chen, Yu, Yu, Meihua and Chandra, Janin (2026). IL-33/IL1RL1 (ST2) signalling drives immune suppression in squamous intraepithelial hyperplasia. Tumour Virus Research 200350, 200350. doi: 10.1016/j.tvr.2026.200350 |
|
2026 Journal Article Spatial transcriptomics and histopathological analyses reveal potential biomarkers and immune features linked to recurrence in head and neck cancerWeeramange, Chameera Ekanayake, Chen, Yibi, Nguyen, Kym-Mai, Zhang, Xi, Hartel, Gunter, Causer, Andrew, Mulay, Onkar, Pavithra, Prakrithi, Lam, Pui Yeng, Gonzalez Cruz, Jazmina, Vasani, Sarju, Kenny, Lizbeth, Taheri, Touraj, Breik, Omar, Nguyen, Quan and Punyadeera, Chamindie (2026). Spatial transcriptomics and histopathological analyses reveal potential biomarkers and immune features linked to recurrence in head and neck cancer. Frontiers in Immunology, 17 1713732, 1-16. doi: 10.3389/fimmu.2026.1713732 |
|
2026 Journal Article Genetic Ablation and Multi‐Omics Profiling Reveal CEP55 as a Key Driver of Tumorigenesis in Diverse Cancer ModelsRashidieh, Behnam, Yang, Yuanhao, Bain, Amanda Louise, Theron, Phillip, Vosloo, Catharina, Keshvari, Sahar, Ahangar, Parinaz, Bowden, Brydie, Tria, Simon M., Wang, Ben B., Isenmann, Sandra, van Holthe, Nicholas J. Westra, Xiong, Zherui, Vu, Hani, Sharma, Sowmya, Sengal, Asmerom, Lopez, J. Alejandro, Finnie, John, Papa, Antonella, Duijf, Pascal H.G., Nguyen, Quan, Apaja, Pirjo M. and Khanna, Kum Kum (2026). Genetic Ablation and Multi‐Omics Profiling Reveal CEP55 as a Key Driver of Tumorigenesis in Diverse Cancer Models. Advanced Science e76782, e76782-e76782. doi: 10.1002/advs.76782 |
|
2026 Journal Article SpaMTP: integrative statistical analysis and visualization of spatial metabolomics and transcriptomics dataCauser, Andrew, Lu, Tianyao, Kriel, Jurgen, Moffet, Joel J. D., Fitzgerald, Christopher C. J., Newman, Andrew, Vu, Hani, Tan, Xiao, Vo, Tuan, Cui, Cedric, Narayana, Vinod K., Whittle, James R., Best, Sarah A., Freytag, Saskia and Nguyen, Quan (2026). SpaMTP: integrative statistical analysis and visualization of spatial metabolomics and transcriptomics data. Nature Methods, 23 (8), 1501-1506. doi: 10.1038/s41592-026-03140-8 |
|
2026 Journal Article VN1K is a pangenome-informed multi-omics and phenomics resource for the Vietnamese populationTran, Trang T. H., Hoang, Tham H., Tran, Mai H., Pham, Tien M., Nguyen, Nam N., Vu, Giang M., Duong, Vinh C., Vu, Quang T., Nguyen, Nguyen T., Vu, Hien Q., Nguyen, Trang M., Nguyen, Thien K., Nguyen, Sang V., Dang, Toan, Nguyen, Hoang, Do, Tuan, Le, Cuong, Nguyen, Dat T., Nguyen, Hung T. T., Le, Nam Q., Nguyen, Quang-Huy, Le, Linh T., Pham, Thang, Vu, Duc M., Le, Huong T. T., Ngo, Tho D., Nguyen, Liem T., Hoang, Yen, Dao, Dat X. ... Vo, Nam S. (2026). VN1K is a pangenome-informed multi-omics and phenomics resource for the Vietnamese population. Nature Communications, 17 (1) 6679. doi: 10.1038/s41467-026-75375-0 |
|
2026 Journal Article Performance of deep learning methods for spatial gene expression prediction from histology images: a comprehensive assessmentXie, Jacky, Tan, Xiao, Jiang, Yuanhao, Nguyen, Hao, Ye, Nan and Nguyen, Quan (2026). Performance of deep learning methods for spatial gene expression prediction from histology images: a comprehensive assessment. Bioinformatics Advances, 6 (1) vbag202, vbag202-1. doi: 10.1093/bioadv/vbag202 |
|
2026 Journal Article SpatioTemporal Omics Consortium: a global effort for biological discovery across species, space and timeLoo, Lipin, Xia, Keke, Crosetto, Nicola, Bienko, Magda, Xu, Chang, Chen, Jinmiao, Reguant, Anna Pascual, Li, Chengyu, Wang, Ji, Wei, Xiaofeng, Liu, Longqi, Liu, Shiping, Han, Lei, Legnini, Ivano, Glastonbury, Craig, Sharma, Alok, Suzuki, Yutaka, Yosef, Nir, Liu, Boxiang, Yeo, Grace, Poo, Mu-ming, Heyn, Holger, Theis, Fabian, Majumder, Partha, Mulder, Jan, Amit, Ido, Carninci, Piero, Xu, Xun, Liu, Weibin and Nguyen, Quan (2026). SpatioTemporal Omics Consortium: a global effort for biological discovery across species, space and time. Nature Methods, 23 (8), 1481-1485. doi: 10.1038/s41592-026-03150-6 |
|
2026 Journal Article Myeloid HDAC7 drives liver inflammation and systemic glucose dysregulation during diet‐induced obesityWang, Yizhuo, Ramnath, Divya, Das Gupta, Kaustav, Prakrithi, P., Bisht, Kavita, Miller, Gregory C., Xiong, Zherui, Wan, Yujun, Tejo, Ellen N., Curson, James E. B., Abrol, Rishika, Keshvari, Sahar, Gunther, Kimberley S., Atkinson, Jordan D., Loh, Zhixuan, Engel, Jessica A., Engwerda, Christian R., Burgener, Sabrina Sofia, Schroder, Kate, Fairlie, David P., Clouston, Andrew D., Powell, Elizabeth E., Irvine, Katharine M., Sullivan, Mitchell A., Lévesque, Jean‐Pierre, Nguyen, Quan, Sweet, Matthew J. and Karunakaran, Denuja (2026). Myeloid HDAC7 drives liver inflammation and systemic glucose dysregulation during diet‐induced obesity. Clinical and Translational Immunology, 15 (6) e70100, 1-20. doi: 10.1002/cti2.70100 |
|
2026 Journal Article Unraveling lncRNA diversity at a single cell resolution and in a spatial context across different cancer typesPrakrithi, P., Vo, Tuan, Xiong, Zherui, Vu, Hani, Nguyen, Loan T., Newman, Andrew, Wilhelmey, Julie, Whitehall, Vicki, Cruz, Jazmina L. Gonzalez, Wood, Simon, Mallett, Andrew J., Gupta, Ishaan and Nguyen, Quan (2026). Unraveling lncRNA diversity at a single cell resolution and in a spatial context across different cancer types. Nature Methods, 23 (6), 1236-1249. doi: 10.1038/s41592-026-03071-4 |
|
2026 Journal Article Intra- and inter-organ communications in aging and cancer: Local and global spatial perspectivesMulay, Onkar, Benedicto, Aitor, Murata, Yui, Ng, Monica Suet Ying, Gonzalez Cruz, Jazmina L. and Nguyen, Quan (2026). Intra- and inter-organ communications in aging and cancer: Local and global spatial perspectives. Seminars in Cell and Developmental Biology, 179-180 103672, 1-15. doi: 10.1016/j.semcdb.2026.103672 |
|
2026 Journal Article Single-cell transcriptomics of bronchoalveolar lavage reveals divergent macrophage subpopulations and trajectories in interstitial lung diseaseZhang, Lai-Ying, Allen, Peter C., Lutzky, Viviana P., Apte, Simon H., Groves, Penny L., Tan, Maxine E., De Silva, Tharushi, Spenceley, Eleanor R., McCloy, Rachael A., Nguyen, Quan H., Powell, Joseph E., Chambers, Daniel C. and O’Sullivan, Brendan J. (2026). Single-cell transcriptomics of bronchoalveolar lavage reveals divergent macrophage subpopulations and trajectories in interstitial lung disease. PLOS One, 21 (4) e0347852, 1-18. doi: 10.1371/journal.pone.0347852 |
|
2026 Journal Article Spatial omics for profiling the dynamic tumor microenvironmentNguyen, Hao, Eapen, Merrin Mary, Nguyen, Quan and Sharma, Ankur (2026). Spatial omics for profiling the dynamic tumor microenvironment. Clinical and Translational Immunology, 15 (4) e70084. doi: 10.1002/cti2.70084 |
|
2026 Journal Article A tissue multiplexing approach to maximize spatial omics output from pathology specimensKao, Yung-Ching, Lee, Katie J., Zhou, Chenhao, Causer, Andrew, Oey, Harald, Khosrotehrani, Kiarash, O’Brien, Blake, Collins, Angus, Nguyen, Quan, Soyer, H. Peter and Stark, Mitchell S. (2026). A tissue multiplexing approach to maximize spatial omics output from pathology specimens. Frontiers in Medicine, 13 1749401, 13. doi: 10.3389/fmed.2026.1749401 |
|
2026 Journal Article Understanding heterogeneity in the pathogenesis and drug responses of ulcerative colitis through single-cell and spatial transcriptomicsPhillips, Jennifer, Tambakis, George, Kumar, Rina, Croft, Anthony, Brown, Ian, Rosty, Christophe, Anderson, Robert, Belz, Gabrielle, Oliver, Amanda J., Xiong, Albert, Nguyen, Quan, Radford-Smith, Graham and Walker, Gareth J. (2026). Understanding heterogeneity in the pathogenesis and drug responses of ulcerative colitis through single-cell and spatial transcriptomics. Frontiers in Immunology, 17 1794207, 1-21. doi: 10.3389/fimmu.2026.1794207 |
|
2026 Journal Article CD8+ T cells sustain vaccination-induced immunity against dissemination of contained tuberculosis in immunosuppressed hostsMiranda-Hernandez, Socorro, Kumar, Manoharan, Henderson, Alec, Graham, Erin, Tan, Xiao, Taylor, Jim, Meehan, Michael T., Ceja, Zuriel, del Pozo-Ramos, Lidia, Pan, Yi, Tsui, Ellen, Donovan, Meg L., Rentería, Miguel E., Flores-Valdez, Mario Alberto, Blumenthal, Antje, Nguyen, Quan, Subbian, Selvakumar, Field, Matt A. and Kupz, Andreas (2026). CD8+ T cells sustain vaccination-induced immunity against dissemination of contained tuberculosis in immunosuppressed hosts. Nature Communications, 17 (1) 4476, 1-17. doi: 10.1038/s41467-026-70911-4 |
|
2026 Other Outputs SPanC-Lnc raw sequencing dataPavithra, Prakrithi and Nguyen, Quan (2026). SPanC-Lnc raw sequencing data. The University of Queensland. (Dataset) doi: 10.48610/86039c7 |
|
2026 Other Outputs SPanC-Lnc manuscript dataPavithra, Prakrithi and Nguyen, Quan (2026). SPanC-Lnc manuscript data. The University of Queensland. (Dataset) doi: 10.48610/4570a11 |
|
2026 Journal Article Robust and interpretable prediction of gene markers and cell types from spatial transcriptomics dataTan, Xiao, Mulay, Onkar, Xie, Jacky, MacDonald, Samual, Kim, Taehyun, Zhou, Chenhao, Xiong, Zherui, Tan, Samuel X., Ye, Nan, McCart Reed, Amy, Khosrotehrani, Kiarash, Roosta, Fred, Trzaskowski, Maciej, Simpson, Peter T. and Nguyen, Quan (2026). Robust and interpretable prediction of gene markers and cell types from spatial transcriptomics data. Nature Communications, 17 (1) 1781, 1781. doi: 10.1038/s41467-026-68487-0 |
|
2026 Journal Article Transdiagnostic comparison of sleep measures across chronic physical and mental health disorders using FitBit data in the All of Us datasetHuang, X., Hsieh, C., Nguyen, Q., Rentería, M.E. and Gharahkhani, P. (2026). Transdiagnostic comparison of sleep measures across chronic physical and mental health disorders using FitBit data in the All of Us dataset. Sleep Medicine, 138 108633, 108633. doi: 10.1016/j.sleep.2025.108633 |
|
2026 Journal Article Integrative spatial omics and artificial intelligence: transforming cancer research with omics data and AIMcKenzie, Maddison, Irac, Sergio Erdel, Chen, Zhian, Moradi, Afshin, Jenner, Adrianne, Nguyen, Quan and Rashidieh, Behnam (2026). Integrative spatial omics and artificial intelligence: transforming cancer research with omics data and AI. Seminars in Cancer Biology, 119 PMID 9010218, 65-82. doi: 10.1016/j.semcancer.2026.01.002 |
