|
2026 Conference Publication Using spatial transcriptomics to interrogate the ductular reaction and progressive fibrosis in metabolic dysfunction-associated steatotic liver diseaseYuan, Lucy, Li, Chaoyi, Xiong, Zherui, Goode, Elizabeth, Clouston, Andrew, Nguyen, Quan, Powell, Elizabeth and Irvine, Katharine (2026). Using spatial transcriptomics to interrogate the ductular reaction and progressive fibrosis in metabolic dysfunction-associated steatotic liver disease. Unknown, Unknown, Unknown. Richmond, VIC Australia: John Wiley & Sons. |
|
2026 Conference Publication Why are thick melanomas lethal? Immune exclusion underpins recurrence in stage II melanomaTan, Samuel, Muller, Nicholas, Kao, Yung-Ching, Xiong, Zherui, Zhou, Chenhao, Gavanescu, Danielle, Roy, Edwige, Whiteman, David, Lambie, Duncan, Soyer, H. Peter, Stark, Mitchell, Nguyen, Quan and Khosrotehrani, Kiarash (2026). Why are thick melanomas lethal? Immune exclusion underpins recurrence in stage II melanoma. Australasian College of Dermatologists, 58th Annual Scientific Meeting, Melbourne, VIC, Australia, 16–18 May 2026. Richmond, VIC, Australia: John Wiley & Sons. doi: 10.1111/ajd.70101 |
|
2026 Conference Publication Precision diagnostics for early melanoma detection using spatial biology and AI guided image analysisKao, Yung-Ching, Tan, Samuel X., Tan, Xiao, Oey, Harald, Lee, Katie J., Vallius, Tuulia, Pelletier, Roxanne, Causer, Andrew, Zhou, Chenhao, Smit, Darren, O'Neill, Jade, Xiong, Albert, O'Brien, Blake, Collins, Angus, Sorger, Peter Karl, Soyer, H. Peter, Khosrotehrani, Kiarash, Nguyen, Quan and Stark, Mitchell S. (2026). Precision diagnostics for early melanoma detection using spatial biology and AI guided image analysis. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-4021 |
|
2026 Conference Publication The genomic landscape of melanoma-prone skinLee, Katie, Kao, Yung-Ching, Smit, Darren, Saldias Montivero, Marietta K., Levy, Joshua Jay, Christensen, Brock C., Nguyen, Quan, Soyer, H. Peter and Stark, Mitchell S. (2026). The genomic landscape of melanoma-prone skin. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-1103 |
|
2026 Conference Publication AI foundation model for single cell annotation from conventional histopathology images of cancerBai, Xiangqi, Lee, HoJoon, Tan, Xiao, Li, Chaoyi, Sathe, Anuja, Wang, Yan, Nguyen, Quan and Ji, Hanlee P. (2026). AI foundation model for single cell annotation from conventional histopathology images of cancer. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-5491 |
|
2026 Conference Publication Targeting CEP55 as a universal oncogenic dependency: integrating spatial multi-omics and targeted therapy across translational preclinical cancer modelsRashidieh, Behnam, Apaja, Pirjo, Nguyen, Quan, McMillan, Nigel and Khanna, Kum Kum (2026). Targeting CEP55 as a universal oncogenic dependency: integrating spatial multi-omics and targeted therapy across translational preclinical cancer models. AACR Annual Meeting, San Diego, CA United States, 17-22 April 2026. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.AM2026-6055 |
|
2026 Conference Publication AI interpretation of broncho-alveolar lavage cytology for personalised pulmonary fibrosis careHockey, Levi, Xiong, Zherui, Kaur, Ashandeep, Apte, Simon H., Groves, Penny L., Tan, Maxine E., Lutzky, Viviana P., Knuckley, Kiara, Zhang, Lai-Ying, Timmins, Sjane, Carew, Alan, Nguyen, Quan and Chambers, Daniel C. (2026). AI interpretation of broncho-alveolar lavage cytology for personalised pulmonary fibrosis care. Unknown, Unknown, Unknown. Richmond, VIC Australia: John Wiley & Sons. |
|
2026 Conference Publication Transdiagnostic comparison of sleep measures across chronic physical and mental health disorders using fitbit data in the All Of Us datasetHuang, X., Hsieh, C., Nguyen, Q., Renteria, M. E. and Gharahkhani, P. (2026). Transdiagnostic comparison of sleep measures across chronic physical and mental health disorders using fitbit data in the All Of Us dataset. Unknown, Unknown, Unknown. Amsterdam, Netherlands: ELSEVIER. |
|
2025 Conference Publication Chronic UVB exposure induces early transcriptomic changes associated with skin cancer developmentZhou, C., Galbraith, J. A., Roy, E., Chandra, J., Nguyen, Q., Walker, G. and Khosrotehrani, K. (2025). Chronic UVB exposure induces early transcriptomic changes associated with skin cancer development. 54th Annual ESDR 2025 Meeting, Antwerp, Belgium, 10-13 September 2025. Oxford, United Kingdom: Elsevier. doi: 10.1016/j.jid.2025.10.412 |
|
2025 Conference Publication Endothelial progenitor plasticity as a driver of immune suppression in melanomaSormani, L., Hashemi, G., Li, H., Tan, S., Zhou, C., Li, K., Muller, N., Nguyen, Q., Roy, E. and Khosrotehrani, K. (2025). Endothelial progenitor plasticity as a driver of immune suppression in melanoma. 54th Annual ESDR 2025 Meeting, Antwerp, Belgium, 10 - 13 September 2025. Oxford, United Kingdom: Elsevier. doi: 10.1016/j.jid.2025.10.407 |
|
2025 Conference Publication Validating the Eph family of receptors as therapeutic targets using patient-derived Glioblastoma organoidsSkarne, Niclas, D'Souza, Rochelle, Martins, Paulo, Mulay, Onkar, Harris, Lachlan, Holton, Emily, Zaman, Ashraf, Akgul, Seckin, Palethorpe, Helen, Colditz, Michael, Alexander, Hamish, Jeffree, Rosalind, Powell, Joseph, Thurecht, Kris, Khanna, Rajiv, Nguyen, Quan, Boyd, Andrew, Gomez, Guillermo and Day, Bryan (2025). Validating the Eph family of receptors as therapeutic targets using patient-derived Glioblastoma organoids. 2025 WFNOS and SNO Annual Meeting, Honolulu, HI United States, 19-23 November 2025. Cary, NC United States: Oxford University Press. doi: 10.1093/neuonc/noaf201.1409 |
|
2025 Conference Publication SMINT and SPAMTP: integrative spatial analysis tools reveal metabolic and transcriptional drivers of invasion in IDH-mutated gliomaFreytag, Saskia, Kriel, Jurgen, Moffet, Joel J. D., Lu, Tianyao, Causer, Andrew, Narayana, Vinod K., Nguyen, Quan, Whittle, James R. and Best, Sarah A. (2025). SMINT and SPAMTP: integrative spatial analysis tools reveal metabolic and transcriptional drivers of invasion in IDH-mutated glioma. 2025 WFNOS and SNO Annual Meeting, Honolulu, HI United States, 19-23 November 2025. Cary, NC United States: Oxford University Press. doi: 10.1093/neuonc/noaf201.0027 |
|
2025 Conference Publication Spatial transcriptomics reveals molecular determinants of mortality in thin melanomaZhou, C., Tan, S.X., Kao, Y., Claeson, M., Brown, S., Lambie, D., Whiteman, D.C., Pandeya, N., Olsen, C.M., Barbour, A., MacGregor, S., Soyer, H.P., Stark, M.S., Hayward, N., Smithers, B.M., Nguyen, Q. and Khosrotehrani, K. (2025). Spatial transcriptomics reveals molecular determinants of mortality in thin melanoma. Society for Investigative Dermatology (SID) 2025 Meeting, San Diego, CA United States, 7-10 May 2025. Oxford, United Kingdom: Elsevier. doi: 10.1016/j.jid.2025.06.109 |
|
2025 Conference Publication Epithelial-mesenchymal transition and immune exclusion underpin the natural history of primary cutaneous melanomaTan, S.X., Muller, N., Zhou, C., Vipulaguna, N., Kao, Y., Whiteman, D.C., Soyer, H.P., Stark, M.S., Nguyen, Q. and Khosrotehrani, K. (2025). Epithelial-mesenchymal transition and immune exclusion underpin the natural history of primary cutaneous melanoma. Society for Investigative Dermatology (SID) 2025 Meeting, San Diego, CA United States, 7-10 May 2025. Oxford, United Kingdom: Elsevier. doi: 10.1016/j.jid.2025.06.953 |
|
2025 Conference Publication Thick versus thin: the natural history of primary melanoma is characterized by Mesenchymal transition and immune exclusionTan, Samuel, Muller, Nicholas, Zhou, Chenhao, Kao, Yung-Ching, Vipulaguna, Nisal, Gavanescu, Danielle, Roy, Edwige, Whiteman, David, Soyer, H. Peter, Stark, Mitchell, Nguyen, Quan and Khosrotehrani, Kiarash (2025). Thick versus thin: the natural history of primary melanoma is characterized by Mesenchymal transition and immune exclusion. Australasian College of Dermatologists, 57th Annual Scientific Meeting, Brisbane, QLD, Australia, 31 May 2025 – 2 June 2025. Richmond, VIC, Australia: John Wiley & Sons. |
|
2025 Conference Publication Identifying tissue-level markers for thin melanoma survival via model-based clustering of spatial omics dataZhang, Min, Arief, Vivi, McLachlan, Geoffrey, Nguyen, Quan and Basford, Kaye (2025). Identifying tissue-level markers for thin melanoma survival via model-based clustering of spatial omics data. Stat4Onc Symposium, Stanford, CA, United States, 16-17 May 2025. |
|
2025 Conference Publication Concurrent spatial transcriptomics and metabolomics map differential effects of drug across brain cancer tissuesVo, Tuan, Cui, Cedric, Causer, Andrew, Tan, Xiao, Kim, Eunju, Xiong, Zherui, Vu, Hani, Hodson, Mark, Lu, Tianyao, Freytag, Saskia, Fung, Jenny, Lee, John and Nguyen, Quan (2025). Concurrent spatial transcriptomics and metabolomics map differential effects of drug across brain cancer tissues. AACR Annual Meeting 2025, 25-30 April 2025, Chicago, IL USA. Washington, DC USA: American Association for Cancer Research. doi: 10.1158/1538-7445.am2025-5067 |
|
2025 Conference Publication Unravelling melanoma brain metastasis tumor microenvironment characteristics using spatial transcriptomicsBelle, Clemence J., Brosda, Sandra, Bonazzi, Vanessa F., Bulteau, Victor, Stuart, Thomas, Xiong, Zherui, Lambie, Duncan, Johansson, Peter A., Aoude, Lauren G., Patel, Kalpana, Stehbens, Samantha J., Stark, Mitchell S., Haass, Nikolas K., Xu, Wen, Pinkham, Mark B., Foote, Matthew C., Olson, Sarah, Atkinson, Victoria, Kulasinghe, Arutha, Nguyen, Quan H. and Barbour, Andrew (2025). Unravelling melanoma brain metastasis tumor microenvironment characteristics using spatial transcriptomics. AACR Annual Meeting 2025, Chicago, IL United States, 25-30 April 2025. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2025-5076 |
|
2025 Conference Publication Environmentally stressed drug- naive melanoma cell subpopulations share a molecular signature with drug- induced early persister cells and drug-resistant cellsKangachar, S. Asgharzadeh, Ahmed, F., Al Emran, A., Matigian, N., Boyle, G. M., Nguyen, Q., Schaider, H. and Haass, N. K. (2025). Environmentally stressed drug- naive melanoma cell subpopulations share a molecular signature with drug- induced early persister cells and drug-resistant cells. 51st Annual Meeting of the Arbeitsgemeinschaft Dermatologische Forschung (ADF), Berlin, Germany, 12–15 March 2025. Chichester, West Sussex United Kingdom: Wiley-Blackwell. |
|
2025 Conference Publication Genomic landscape of melanoma-prone skinLee, K., Kao, Y.-C., Smith, D.J., Oey, H., Saldias Montivero, M.K., Causer, A., Christiansen, B.C., Nguyen, Q., Soyer, H.P. and Stark, M.S. (2025). Genomic landscape of melanoma-prone skin. 21st EADO Congress & 11th World Congress of Melanoma, Athens, Greece, 3-5 April 2025. London, United Kingdom: Elsevier. doi: 10.1016/j.ejcskn.2025.100506 |
