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2019 Journal Article Combination of vaccine strain measles virus and nimotuzumab in the treatment of laryngeal cancerNguyen, Linh Toan, Ngo, Thu Hang, Nguyen, Kim Luu, Can, Van Mao, Nguyen, Van Ba, Nguyen, Thi Xuan, Truong, Dinh Cam, Yamamoto, Naoki, Hoang, Van Tong and Ho, Anh Son (2019). Combination of vaccine strain measles virus and nimotuzumab in the treatment of laryngeal cancer. Anticancer Research, 39 (7), 3727-3737. doi: 10.21873/anticanres.13521 |
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2018 Journal Article Single-cell transcriptomic analysis of cardiac differentiation from human PSCs reveals HOPX-dependent cardiomyocyte maturationFriedman, Clayton E., Nguyen, Quan, Lukowski, Samuel W., Helfer, Abbigail, Chiu, Han Sheng, Miklas, Jason, Levy, Shiri, Suo, Shengbao, Han, Jing-Dong Jackie, Osteil, Pierre, Peng, Guangdun, Jing, Naihe, Baillie, Greg J., Senabouth, Anne, Christ, Angelika N., Bruxner, Timothy J., Murry, Charles E., Wong, Emily S., Ding, Jun, Wang, Yuliang, Hudson, James, Ruohola-Baker, Hannele, Bar-Joseph, Ziv, Tam, Patrick P.L., Powell, Joseph E. and Palpant, Nathan J. (2018). Single-cell transcriptomic analysis of cardiac differentiation from human PSCs reveals HOPX-dependent cardiomyocyte maturation. Cell Stem Cell, 23 (4), 586-598. doi: 10.1016/j.stem.2018.09.009 |
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2018 Journal Article Single-cell profiling identifies key pathways expressed by iPSCs cultured in different commercial mediaDaniszewski, Maciej, Nguyen, Quan, Chy, Hun S., Singh, Vikrant, Crombie, Duncan E., Kulkarni, Tejal, Liang, Helena H., Sivakumaran, Priyadharshini, Lidgerwood, Grace E., Hernández, Damián, Conquest, Alison, Rooney, Louise A., Chevalier, Sophie, Andersen, Stacey B., Senabouth, Anne, Vickers, James C., Mackey, David A., Craig, Jamie E., Laslett, Andrew L., Hewitt, Alex W., Powell, Joseph E. and Pébay, Alice (2018). Single-cell profiling identifies key pathways expressed by iPSCs cultured in different commercial media. iScience, 7, 30-39. doi: 10.1016/j.isci.2018.08.016 |
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2018 Journal Article Detection of HPV E7 transcription at single-cell resolution in epidermisLukowski, S. W., Tuong, Z. K., Noske, K., Senabouth, A., Nguyen, Q. H., Andersen, S. B., Soyer, H. P., Frazer, I. H. and Powell, J. E. (2018). Detection of HPV E7 transcription at single-cell resolution in epidermis. The Journal of Investigative Dermatology, 138 (12), 2558-2567. doi: 10.1016/j.jid.2018.06.169 |
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2018 Journal Article Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulationsNguyen, Quan H., Lukowski, Samuel W., Chiu, Han Sheng, Senabouth, Anne, Bruxner, Timothy J.C., Christ, Angelika N., Palpant, Nathan J. and Powell, Joseph E. (2018). Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations. Genome Research, 28 (7), 1053-1066. doi: 10.1101/gr.223925.117 |
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2018 Journal Article Target-enrichment sequencing for detailed characterization of small RNAsNguyen, Quan, Aguado, Julio, Iannelli, Fabio, Suzuki, Ana Maria, Rossiello, Francesca, D'Adda Di Fagagna, Fabrizio and Carninci, Piero (2018). Target-enrichment sequencing for detailed characterization of small RNAs. Nature Protocols, 13 (4), 768-786. doi: 10.1038/nprot.2018.001 |
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2018 Journal Article Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics dataNguyen, Quan H., Tellam, Ross L., Naval-Sanchez, Marina, Porto-Neto, Laercio R., Barendse, William, Reverter, Antonio, Hayes, Benjamin, Kijas, James and Dalrymple, Brian P. (2018). Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data. Gigascience, 7 (3), 1-17. doi: 10.1093/gigascience/gix136 |
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2018 Journal Article Single cell RNA sequencing of stem cell-derived retinal ganglion cellsDaniszewski, Maciej, Senabouth, Anne, Nguyen, Quan H., Crombie, Duncan E., Lukowski, Samuel W., Kulkarni, Tejal, Sluch, Valentin M., Jabbari, Jafar S., Chamling, Xitiz, Zack, Donald J., Pébay, Alice, Powell, Joseph E. and Hewitt, Alex W. (2018). Single cell RNA sequencing of stem cell-derived retinal ganglion cells. Scientific Data, 5 (1) 180013, 1-9. doi: 10.1038/sdata.2018.13 |
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2018 Journal Article Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breedsNaval-Sanchez, Marina, Nguyen, Quan, McWilliam, Sean, Porto-Neto, Laercio R., Tellam, Ross, Vuocolo, Tony, Reverter, Antonio, Perez-Enciso, Miguel, Brauning, Rudiger, Clarke, Shannon, McCulloch, Alan, Zamani, Wahid, Naderi, Saeid, Rezaei, Hamid Reza, Pompanon, Francois, Taberlet, Pierre, Worley, Kim C., Gibbs, Richard A., Muzny, Donna M., Jhangiani, Shalini N., Cockett, Noelle, Daetwyler, Hans and Kijas, James (2018). Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds. Nature Communications, 9 (1) 859. doi: 10.1038/s41467-017-02809-1 |
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2018 Conference Publication Genetic networks modulating cell fate specification and contributing to cardiac disease risk in hiPSC-derived cardiomyocytes at single cell resolutionNguyen, Quan H., Lukowski, Samuel W., Chiu, Han S., Friedman, Clayton E., Senabouth, Anne, Crowhurst, Liam, Bruxner, Timothy J. C., Christ, Angelika N., Hudson, James, Ding, Jun, Bar-Joseph, Ziv, Tam, Patrick P. L., Palpant, Nathan J. and Powell, Joseph E. (2018). Genetic networks modulating cell fate specification and contributing to cardiac disease risk in hiPSC-derived cardiomyocytes at single cell resolution. Human Genome Meeting 2018, Yokohama, Japan, 12-15 March 2018. London, United Kingdom: Henry Stewart Publications LLP. doi: 10.1186/s40246-018-0138-6 |
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2017 Journal Article A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaksIannelli, Fabio, Galbiati, Alessandro, Capozzo, Ilaria, Nguyen, Quan, Magnuson, Brian, Michelini, Flavia, D'Alessandro, Giuseppina, Cabrini, Matteo, Roncador, Marco, Francia, Sofia, Crosetto, Nicola, Ljungman, Mats, Carninci, Piero and di Fagagna, Fabrizio d'Adda (2017). A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks. Nature Communications, 8 (1) 15656, 15656. doi: 10.1038/ncomms15656 |
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2017 Journal Article DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAsRossiello, Francesca, Aguado, Julio, Sepe, Sara, Iannelli, Fabio, Nguyen, Quan, Pitchiaya, Sethuramasundaram, Carninci, Piero and Di Fagagna, Fabrizio d’Adda (2017). DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAs. Nature Communications, 8 (1) 13980, 13980. doi: 10.1038/ncomms13980 |
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2016 Journal Article In vitro production of baculoviruses: identifying host and virus genes associated with high productivityNguyen, Quan, Tran, Trinh Tb, Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2016). In vitro production of baculoviruses: identifying host and virus genes associated with high productivity. Applied Microbiology and Biotechnology, 100 (21), 1-15. doi: 10.1007/s00253-016-7774-3 |
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2016 Conference Publication Predicting regulatory SNPs within enhancers and promoters in cattleNguyen, Q., Tellam, R. L., Kijas, J., Barendse, W. and Dalrymple, B. P. (2016). Predicting regulatory SNPs within enhancers and promoters in cattle. Functional Annotation of Animal Genomes (FAANG) Joint ASAS-ISAG Symposium, Salt Lake City, Utah, United States, July 23 2016. Cary, NC United States: Oxford University Press (OUP). doi: 10.2527/jas2016.94supplement432a |
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2016 Conference Publication S0125 Changing patterns of genomic variability following domestication of sheepSanchez, M. Naval, Brauning, R., Clarke, S. M., Nguyen, Q., McCulloch, A., Cockett, N. E., Zamani, W., Pompanon, F., Taberlet, P., McWilliam, S., Daetwyler, H. and Kijas, J. (2016). S0125 Changing patterns of genomic variability following domestication of sheep. Cary, NC, United States: Oxford University Press. doi: 10.2527/jas2016.94supplement413x |
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2015 Book Chapter Expression specificity of disease-associated lncRNAs: toward personalized medicineNguyen, Quan and Carninci, Piero (2015). Expression specificity of disease-associated lncRNAs: toward personalized medicine. Long non-coding RNAs in human disease. (pp. 237-258) edited by Kevin V. Morris. Cham, Switerland: Springer International Publishing. doi: 10.1007/82_2015_464 |
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2014 Journal Article Inactivation of the tumor suppressor WTX in a subset of pediatric tumorsAkhavanfard, Sara, Vargas, Sara O., Han, Moonjoo, Nitta, Mai, Chang, Clarice B., Le, Long P., Fazlollahi, Ladan, Quan Nguyen, , Ma, Yunqing, Cosper, Arjola, Dias-Santagata, Dora, Han, Jae Y., Bergethon, Kristin, Borger, Darrell R., Ellisen, Leif W., Pomeroy, Scott L., Haber, Daniel A., Iafrate, A. John and Rivera, Miguel N. (2014). Inactivation of the tumor suppressor WTX in a subset of pediatric tumors. Genes Chromosomes & Cancer, 53 (1), 67-77. doi: 10.1002/gcc.22118 |
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2014 Journal Article Farmer portfolios, strategic diversity management and climate-change adaptation - implications for policy in Vietnam and KenyaHoang, M. H., Namirembe, S., van Noordwijk, M., Catacutan, D., Öborn, I., Perez-Teran, A. S., Nguyen, H. Q. and Dumas-Johansen, M. K. (2014). Farmer portfolios, strategic diversity management and climate-change adaptation - implications for policy in Vietnam and Kenya. Climate and Development, 6 (3), 216-225. doi: 10.1080/17565529.2013.857588 |
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2013 Journal Article Genome scale transcriptomics of baculovirus-insect interactionsNguyen,Quan, Nielsen, Lars K. and Reid, Steven (2013). Genome scale transcriptomics of baculovirus-insect interactions. Viruses, 5 (11), 2721-2747. doi: 10.3390/v5112721 |
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2013 Journal Article Genome scale analysis of differential mRNA expression of Helicoverpa zea insect cells infected with a H. armigera baculovirusNguyen, Quan, Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2013). Genome scale analysis of differential mRNA expression of Helicoverpa zea insect cells infected with a H. armigera baculovirus. Virology, 444 (1-2), 158-170. doi: 10.1016/j.virol.2013.06.004 |
