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2018 Journal Article Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics dataNguyen, Quan H., Tellam, Ross L., Naval-Sanchez, Marina, Porto-Neto, Laercio R., Barendse, William, Reverter, Antonio, Hayes, Benjamin, Kijas, James and Dalrymple, Brian P. (2018). Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data. Gigascience, 7 (3), 1-17. doi: 10.1093/gigascience/gix136 |
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2018 Journal Article Single cell RNA sequencing of stem cell-derived retinal ganglion cellsDaniszewski, Maciej, Senabouth, Anne, Nguyen, Quan H., Crombie, Duncan E., Lukowski, Samuel W., Kulkarni, Tejal, Sluch, Valentin M., Jabbari, Jafar S., Chamling, Xitiz, Zack, Donald J., Pébay, Alice, Powell, Joseph E. and Hewitt, Alex W. (2018). Single cell RNA sequencing of stem cell-derived retinal ganglion cells. Scientific Data, 5 (1) 180013, 1-9. doi: 10.1038/sdata.2018.13 |
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2018 Journal Article Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breedsNaval-Sanchez, Marina, Nguyen, Quan, McWilliam, Sean, Porto-Neto, Laercio R., Tellam, Ross, Vuocolo, Tony, Reverter, Antonio, Perez-Enciso, Miguel, Brauning, Rudiger, Clarke, Shannon, McCulloch, Alan, Zamani, Wahid, Naderi, Saeid, Rezaei, Hamid Reza, Pompanon, Francois, Taberlet, Pierre, Worley, Kim C., Gibbs, Richard A., Muzny, Donna M., Jhangiani, Shalini N., Cockett, Noelle, Daetwyler, Hans and Kijas, James (2018). Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds. Nature Communications, 9 (1) 859. doi: 10.1038/s41467-017-02809-1 |
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2018 Conference Publication Genetic networks modulating cell fate specification and contributing to cardiac disease risk in hiPSC-derived cardiomyocytes at single cell resolutionNguyen, Quan H., Lukowski, Samuel W., Chiu, Han S., Friedman, Clayton E., Senabouth, Anne, Crowhurst, Liam, Bruxner, Timothy J. C., Christ, Angelika N., Hudson, James, Ding, Jun, Bar-Joseph, Ziv, Tam, Patrick P. L., Palpant, Nathan J. and Powell, Joseph E. (2018). Genetic networks modulating cell fate specification and contributing to cardiac disease risk in hiPSC-derived cardiomyocytes at single cell resolution. Human Genome Meeting 2018, Yokohama, Japan, 12-15 March 2018. London, United Kingdom: Henry Stewart Publications LLP. doi: 10.1186/s40246-018-0138-6 |
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2017 Journal Article A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaksIannelli, Fabio, Galbiati, Alessandro, Capozzo, Ilaria, Nguyen, Quan, Magnuson, Brian, Michelini, Flavia, D'Alessandro, Giuseppina, Cabrini, Matteo, Roncador, Marco, Francia, Sofia, Crosetto, Nicola, Ljungman, Mats, Carninci, Piero and di Fagagna, Fabrizio d'Adda (2017). A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks. Nature Communications, 8 (1) 15656, 15656. doi: 10.1038/ncomms15656 |
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2017 Journal Article DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAsRossiello, Francesca, Aguado, Julio, Sepe, Sara, Iannelli, Fabio, Nguyen, Quan, Pitchiaya, Sethuramasundaram, Carninci, Piero and Di Fagagna, Fabrizio d’Adda (2017). DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAs. Nature Communications, 8 (1) 13980, 13980. doi: 10.1038/ncomms13980 |
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2016 Journal Article In vitro production of baculoviruses: identifying host and virus genes associated with high productivityNguyen, Quan, Tran, Trinh Tb, Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2016). In vitro production of baculoviruses: identifying host and virus genes associated with high productivity. Applied Microbiology and Biotechnology, 100 (21), 1-15. doi: 10.1007/s00253-016-7774-3 |
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2016 Conference Publication S0125 Changing patterns of genomic variability following domestication of sheepSanchez, M. Naval, Brauning, R., Clarke, S. M., Nguyen, Q., McCulloch, A., Cockett, N. E., Zamani, W., Pompanon, F., Taberlet, P., McWilliam, S., Daetwyler, H. and Kijas, J. (2016). S0125 Changing patterns of genomic variability following domestication of sheep. Cary, NC, United States: Oxford University Press. doi: 10.2527/jas2016.94supplement413x |
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2016 Conference Publication Predicting regulatory SNPs within enhancers and promoters in cattleNguyen, Q., Tellam, R. L., Kijas, J., Barendse, W. and Dalrymple, B. P. (2016). Predicting regulatory SNPs within enhancers and promoters in cattle. Functional Annotation of Animal Genomes (FAANG) Joint ASAS-ISAG Symposium, Salt Lake City, Utah, United States, July 23 2016. Cary, NC United States: Oxford University Press (OUP). doi: 10.2527/jas2016.94supplement432a |
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2015 Book Chapter Expression specificity of disease-associated lncRNAs: toward personalized medicineNguyen, Quan and Carninci, Piero (2015). Expression specificity of disease-associated lncRNAs: toward personalized medicine. Long non-coding RNAs in human disease. (pp. 237-258) edited by Kevin V. Morris. Cham, Switerland: Springer International Publishing. doi: 10.1007/82_2015_464 |
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2014 Journal Article Inactivation of the tumor suppressor WTX in a subset of pediatric tumorsAkhavanfard, Sara, Vargas, Sara O., Han, Moonjoo, Nitta, Mai, Chang, Clarice B., Le, Long P., Fazlollahi, Ladan, Quan Nguyen, , Ma, Yunqing, Cosper, Arjola, Dias-Santagata, Dora, Han, Jae Y., Bergethon, Kristin, Borger, Darrell R., Ellisen, Leif W., Pomeroy, Scott L., Haber, Daniel A., Iafrate, A. John and Rivera, Miguel N. (2014). Inactivation of the tumor suppressor WTX in a subset of pediatric tumors. Genes Chromosomes & Cancer, 53 (1), 67-77. doi: 10.1002/gcc.22118 |
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2014 Journal Article Farmer portfolios, strategic diversity management and climate-change adaptation - implications for policy in Vietnam and KenyaHoang, M. H., Namirembe, S., van Noordwijk, M., Catacutan, D., Öborn, I., Perez-Teran, A. S., Nguyen, H. Q. and Dumas-Johansen, M. K. (2014). Farmer portfolios, strategic diversity management and climate-change adaptation - implications for policy in Vietnam and Kenya. Climate and Development, 6 (3), 216-225. doi: 10.1080/17565529.2013.857588 |
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2013 Journal Article Genome scale transcriptomics of baculovirus-insect interactionsNguyen,Quan, Nielsen, Lars K. and Reid, Steven (2013). Genome scale transcriptomics of baculovirus-insect interactions. Viruses, 5 (11), 2721-2747. doi: 10.3390/v5112721 |
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2013 Journal Article Genome scale analysis of differential mRNA expression of Helicoverpa zea insect cells infected with a H. armigera baculovirusNguyen, Quan, Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2013). Genome scale analysis of differential mRNA expression of Helicoverpa zea insect cells infected with a H. armigera baculovirus. Virology, 444 (1-2), 158-170. doi: 10.1016/j.virol.2013.06.004 |
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2013 Other Outputs Genome-scale transcriptomic study of Helicoverpa Zea host cells and H. armigera baculovirus infections in vitroNguyen, Hoang Quan (2013). Genome-scale transcriptomic study of Helicoverpa Zea host cells and H. armigera baculovirus infections in vitro. PhD Thesis, Australian Institute For Bioengineering and Nanotechnology, The University of Queensland. |
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2013 Journal Article Multipurpose agroforestry as a climate change resiliency option for farmers: an example of local adaptation in VietnamNguyen, Quan, Hoang, Minh Ha, Oborn, Ingrid and Noordwijk, Meine (2013). Multipurpose agroforestry as a climate change resiliency option for farmers: an example of local adaptation in Vietnam. Climatic Change, 117 (1-2), 241-257. doi: 10.1007/s10584-012-0550-1 |
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2012 Journal Article Transcriptome sequencing of and microarray development for a Helicoverpa zea cell line to investigate in vitro insect cell-baculovirus interactionsNguyen, Quan, Palfreyman, Robin W., Chan, Leslie C. L., Reid, Steven and Nielsen, Lars K. (2012). Transcriptome sequencing of and microarray development for a Helicoverpa zea cell line to investigate in vitro insect cell-baculovirus interactions. PLoS One, 7 (5) e36324, e36324.1-e36324.15. doi: 10.1371/journal.pone.0036324 |
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2011 Journal Article Control of B cell development by the histone H2A deubiquitinase MYSM1Jiang, Xiao-Xia, Nguyen, Quan, Chou, YuChia, Wang, Tao, Nandakumar, Vijayalakshmi, Yates, Peter, Jones, Lindsey, Wang, Lifeng, Won, Haejung, Lee, Hye-Ra, Jung, Jae U., Müschen, Markus, Huang, Xue F. and Chen, Si-Yi (2011). Control of B cell development by the histone H2A deubiquitinase MYSM1. Immunity, 35 (6), 883-896. doi: 10.1016/j.immuni.2011.11.010 |
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2011 Journal Article In vitro production of Helicoverpa baculovirus biopesticides: Automated selection of insect cell clones for manufacturing and systems biology studiesNguyen, Quan, Qi, Ying Mei, Wu, Yang, Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2011). In vitro production of Helicoverpa baculovirus biopesticides: Automated selection of insect cell clones for manufacturing and systems biology studies. Journal of Virological Methods, 175 (2), 197-205. doi: 10.1016/j.jviromet.2011.05.011 |
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2011 Conference Publication Optimising in vitro production of baculovirus biopesticides – a transcriptomics approach to establish a platform for expression analysis and bioengineering of virus and insect cellsNguyen, Quan, Prasath, Daniel B., Palfreyman, Robin W., Nielsen, Lars K., Chan, Leslie C. L. and Reid, Steven (2011). Optimising in vitro production of baculovirus biopesticides – a transcriptomics approach to establish a platform for expression analysis and bioengineering of virus and insect cells. Chemeca 2011: Australasian Conference on Chemical Engineering, Sydney, Australia, 18-21 September 2011. Barton, ACT, Australia: Engineers Australia. |
