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2012 Conference Publication Incidence and severity of spondyloarthritis and Crohn's Ileitis are determined by interaction between the microbiota and genetic susceptibility in beta-glucan-treated SKG miceThomas, Ranjeny, Rehaume, Linda, Aguirre de Cárcer, Daniel, Mondot, Stan, Velasco, Jared, Benham, Helen, Ruutu, Merja, Morrison, Mark and McGuckin, Michael (2012). Incidence and severity of spondyloarthritis and Crohn's Ileitis are determined by interaction between the microbiota and genetic susceptibility in beta-glucan-treated SKG mice. Annual Scientific Meeting of the American-College-of-Rheumatology (ACR) and Association-of-Rheumatology-Health-Professionals (ARHP), Washington, DC, United States, 9-14 November 2012. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1002/art.37735 |
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2012 Conference Publication Transcriptomic responses of Bacteroides vulgatus PC510 to faecal water additions to complex mediumMorrison, Mark, Mondot, Stanislas, Klaassens, Eline S. and Ó Cuív, Páraic (2012). Transcriptomic responses of Bacteroides vulgatus PC510 to faecal water additions to complex medium. unknown, unknown, unknown. HOBOKEN: WILEY-BLACKWELL. |
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2011 Journal Article Populations of select cultured and uncultured bacteria in the rumen of sheep and the effect of diets and ruminal fractionsStiverson, Jill, Morrison, Mark and Yu, Zhongtang (2011). Populations of select cultured and uncultured bacteria in the rumen of sheep and the effect of diets and ruminal fractions. International Journal of Microbiology, 2011 750613, 1-8. doi: 10.1155/2011/750613 |
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2011 Journal Article Strategy for modular tagged high-throughput amplicon sequencingde Carcer, Daniel Aguirre, Denman, Stuart E., McSweeney, Chris and Morrison, Mark (2011). Strategy for modular tagged high-throughput amplicon sequencing. Applied and Environmental Microbiology, 77 (17), 6310-6312. doi: 10.1128/AEM.05146-11 |
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2011 Journal Article Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabiesPope, P. B., Smith, W., Denman, S. E., Tringe, S. G., Barry, K., Hugenholtz, P., McSweeney, C. S., McHardy, A. C. and Morrison, M. (2011). Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies. Science, 333 (6042), 646-648. doi: 10.1126/science.1205760 |
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2011 Journal Article Exploring rumen methanogen genomes to identify targets for methane mitigation strategiesAttwood, G. T., Altermann, E., Kelly, W. J., Leahy, S. C., Zhang, L. and Morrison, M. (2011). Exploring rumen methanogen genomes to identify targets for methane mitigation strategies. Animal Feed Science and Technology, 166-167, 65-75. doi: 10.1016/j.anifeedsci.2011.04.004 |
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2011 Journal Article Biochemical Characterization of the O-Linked Glycosylation Pathway in <i>Neisseria gonorrhoeae</i> Responsible for Biosynthesis of Protein Glycans Containing <i>N</i>,<i>N</i>′-DiacetylbacillosamineHartley, Meredith D., Morrison, Michael J., Aas, Finn Erik, Borud, Bente, Koomey, Michael and Imperiali, Barbara (2011). Biochemical Characterization of the O-Linked Glycosylation Pathway in Neisseria gonorrhoeae Responsible for Biosynthesis of Protein Glycans Containing N,N′-Diacetylbacillosamine. Biochemistry, 50 (22), 4936-4948. doi: 10.1021/bi2003372 |
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2011 Book Chapter Sequence-Based Characterization of Microbiomes by Serial Analysis of Ribosomal Sequence Tags (SARST)Yu, Zhongtang and Morrison, Mark (2011). Sequence-Based Characterization of Microbiomes by Serial Analysis of Ribosomal Sequence Tags (SARST). Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. (pp. 265-273) Hoboken, NJ, USA: John Wiley and Sons. doi: 10.1002/9781118010518.ch31 |
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2011 Journal Article Overestimation of the abundance of sulfate-reducing bacteria in human feces by quantitative PCR targeting the Desulfovibrio 16S rRNA geneChristophersen, C. T., Morrison, M. and Conlon, M. A. (2011). Overestimation of the abundance of sulfate-reducing bacteria in human feces by quantitative PCR targeting the Desulfovibrio 16S rRNA gene. Applied and Environmental Microbiology, 77 (10), 3544-3546. doi: 10.1128/AEM.02851-10 |
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2011 Journal Article Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colonde Carcer, Daniel Aguirre, Ó Cuív, Páraic, Wang, Tingting, Kang, Seungha, Worthley, Daniel, Whitehall, Vicki, Gordon, Iain, McSweeney, Chris, Leggett, Barbara and Morrison, Mark (2011). Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon. ISME Journal, 5 (5), 801-809. doi: 10.1038/ismej.2010.177 |
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2011 Journal Article Taxonomic metagenome sequence assignment with structured output modelsPatil, Kaustubh R., Haider, Peter, Pope, Phillip B., Turnbaugh, Peter J., Morrison, Mark, Scheffer, Tobias and McHardy, Alice C. (2011). Taxonomic metagenome sequence assignment with structured output models. Nature Methods, 8 (3), 191-192. doi: 10.1038/nmeth0311-191 |
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2011 Journal Article Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formationPope, Phillip B., Totsika, Makrina, de Carcer, Daniel Aguirre, Schembri, Mark A. and Morrison, Mark (2011). Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formation. ISME Journal, 5 (2), 341-350. doi: 10.1038/ismej.2010.116 |
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2011 Journal Article High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gutRosewarne, Carly P., Pope, Phillip B., Denman, Stuart E., McSweeney, Christopher S., O'Cuiv, Paraic and Morrison, Mark (2011). High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gut. Microbial Ecology, 61 (2), 448-454. doi: 10.1007/s00248-010-9745-z |
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2011 Journal Article The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissueÓ Cuív, Páraic, de Carcer, Daniel Aguirre, Jones, Michelle, Klaassens, Eline S., Worthley, Daniel L., Whitehall, Vicki L. J., Kang, Seungha, McSweeney, Christopher S., Leggett, Barbara A. and Morrison, Mark (2011). The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue. Microbial Ecology, 61 (2), 353-362. doi: 10.1007/s00248-010-9771-x |
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2011 Book Chapter Selection and sequencing of strains as references for human microbiome studiesKlaassens, Eline S., Morrison, Mark and Highlander, Sarah K. (2011). Selection and sequencing of strains as references for human microbiome studies. Metagenomics of the Human Body. (pp. 79-90) New York, NY United States: Springer. doi: 10.1007/978-1-4419-7089-3_5 |
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2011 Conference Publication The Role of Gut Microflora and Autoreactive CD4+T Cells in the Development of Spondyloarthritis and Inflammatory Bowel Disease in Beta-Glucan-Treated SKG MiceRuutu, Merja, Velasco, Jared, Aguirre, Daniel, Benham, Helen, Morrison, Mark, McGuckin, Michael and Thomas, Ranjeny (2011). The Role of Gut Microflora and Autoreactive CD4+T Cells in the Development of Spondyloarthritis and Inflammatory Bowel Disease in Beta-Glucan-Treated SKG Mice. 75th Annual Scientific Meeting of the American College of Rheumatology/46th Annual Scientific Meeting of the Association of Rheumatology Health Professionals, Chicago, IL, United States, 4-9 November 2011. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1002/art.33310 |
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2011 Journal Article Highlighting new phylogenetic specificities of Crohn's disease microbiotaMondot, S., Kang, S., Furet, J.P., Aguirre De Carcer, D., McSweeney, C., Morrison, M., Marteau, P., Dore, J. and Leclerc, M. (2011). Highlighting new phylogenetic specificities of Crohn's disease microbiota. Inflammatory Bowel Diseases, 17 (1), 185-192. doi: 10.1002/ibd.21436 |
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2011 Conference Publication Microbiome shifts with 6-thioguanine provide insights about IBD and its treatmentDe Carcer, D. Aguirre, Oancea, I., Das, I., Mcguckin, M., Duley, J., Morrison, M. and Florin, T. (2011). Microbiome shifts with 6-thioguanine provide insights about IBD and its treatment. Australian Gastroenterology Week 2011, South Bank, QLD, Australia, 12–15 September 2011. MALDEN: WILEY-BLACKWELL. doi: 10.1111/j.1440-1746.2011.06820.x |
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2011 Conference Publication Insight Into Differential Gene Expression of Enterococcus Faecium, an IBD Associated Bacterium, Using RNA-SeqKlaassens, Eline S., Wang, Tingting, Tolls, Elisabeth H., McWilliam, Sean, Zhao, Li-Ping, Ó Cuív, Páraic and Morrison, Mark (2011). Insight Into Differential Gene Expression of Enterococcus Faecium, an IBD Associated Bacterium, Using RNA-Seq. Conference on Digestive Disease Week 2011, Chicago Il, May 07-10, 2011. W B SAUNDERS CO-ELSEVIER INC. |
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2011 Journal Article Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrateKabel, Mirjam A., Yeoman, Carl J., Han, Yejun, Dodd, Dylan, Abbas, Charles A., de Bont, Jan A. M., Morrison, Mark, Cann, Isaac K. O. and Mackie, Roderick I. (2011). Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrate. Applied and Environmental Microbiology, 77 (16), 5671-5681. doi: 10.1128/AEM.05321-11 |
