|
2019 Journal Article The impact of cDNA normalization on long-read sequencing of a complex transcriptomeHoang, Nam V., Furtado, Agnelo, Perlo, Virginie, Botha, Frederik C. and Henry, Robert (2019). The impact of cDNA normalization on long-read sequencing of a complex transcriptome. Frontiers in Genetics, 10 (JUN) 654, 654. doi: 10.3389/fgene.2019.00654 |
|
2019 Journal Article Analysis of the expression of transcription factors and other genes associated with aleurone layer development in wheat endospermNirmal, Ravi C., Singh, Amit Kumar, Furtado, Agnelo and Henry, Robert J. (2019). Analysis of the expression of transcription factors and other genes associated with aleurone layer development in wheat endosperm. Journal of Cereal Science, 85, 62-69. doi: 10.1016/j.jcs.2018.11.010 |
|
2019 Book Chapter Re-sequencing resources to improve starch and grain quality in riceSubbaiyan, Gopala Krishnan, Masouleh, Ardashir K., Furtado, Agnelo, Waters, Daniel L. E. and Henry, Robert J. (2019). Re-sequencing resources to improve starch and grain quality in rice. Rice Grain Quality. (pp. 201-240) edited by Nese Sreenivasulu. New York, NY, United States: Humana Press Inc.. doi: 10.1007/978-1-4939-8914-0_12 |
|
2018 Journal Article Differential response of wheat genotypes to heat stress during grain fillingRangan, Parimalan, Furtado, Agnelo and Henry, Robert (2018). Differential response of wheat genotypes to heat stress during grain filling. Experimental Agriculture, 55 (5), 818-827. doi: 10.1017/s0014479718000406 |
|
2018 Journal Article Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selectionWright, G. C., Borgognone, M. G., Connor, D. J.O., Rachaputi, R. C.N., Henry, R. J., Furtado, A., Anglin, N. L. and Freischfresser, D. B. (2018). Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selection. Crop & Pasture Science, 69 (12), 1237-1250. doi: 10.1071/CP18156 |
|
2018 Journal Article Origin and evolution of qingke barley in TibetZeng, Xingquan, Guo, Yu, Xu, Qijun, Mascher, Martin, Guo, Ganggang, Li, Shuaicheng, Mao, Likai, Liu, Qingfeng, Xia, Zhanfeng, Zhou, Juhong, Yuan, Hongjun, Tai, Shuaishuai, Wang, Yulin, Wei, Zexiu, Song, Li, Zha, Sang, Li, Shiming, Tang, Yawei, Bai, Lijun, Zhuang, Zhenhua, He, Weiming, Zhao, Shancen, Fang, Xiaodong, Gao, Qiang, Yin, Ye, Wang, Jian, Yang, Huanming, Zhang, Jing, Henry, Robert J. ... Tashi, Nyima (2018). Origin and evolution of qingke barley in Tibet. Nature Communications, 9 (1) 5433, 5433. doi: 10.1038/s41467-018-07920-5 |
|
2018 Journal Article Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus OryzaStein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos ... Wing, Rod A. (2018). Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 (11), 1618-1618. doi: 10.1038/s41588-018-0261-2 |
|
2018 Journal Article SNP in the Coffea arabica genome associated with coffee qualityTran, Hue T. M., Furtado, Agnelo, Vargas, Carlos Alberto Cordero, Smyth, Heather, Lee, L. Slade and Henry, Robert (2018). SNP in the Coffea arabica genome associated with coffee quality. Tree Genetics & Genomes, 14 (5) 72. doi: 10.1007/s11295-018-1282-9 |
|
2018 Journal Article Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber contentKasirajan, Lakshmi, Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2018). Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content. Scientific Reports, 8 (1) 11612, 11612. doi: 10.1038/s41598-018-30033-4 |
|
2018 Journal Article The coffee bean transcriptome explains the accumulation of the major bean components through ripeningCheng, Bing, Furtado, Agnelo and Henry, Robert J. (2018). The coffee bean transcriptome explains the accumulation of the major bean components through ripening. Scientific Reports, 8 (1) 11414, 11414. doi: 10.1038/s41598-018-29842-4 |
|
2018 Journal Article A mosaic monoploid reference sequence for the highly complex genome of sugarcaneGarsmeur, Olivier, Droc, Gaetan, Antonise, Rudie, Grimwood, Jane, Potier, Bernard, Aitken, Karen, Jenkins, Jerry, Martin, Guillaume, Charron, Carine, Hervouet, Catherine, Costet, Laurent, Yahiaoui, Nabila, Healey, Adam, Sims, David, Cherukuri, Yesesri, Sreedasyam, Avinash, Kilian, Andrzej, Chan, Agnes, Van Sluys, Marie-Anne, Swaminathan, Kankshita, Town, Christopher, Bergès, Hélène, Simmons, Blake, Glaszmann, Jean Christophe, van der Vossen, Edwin, Henry, Robert, Schmutz, Jeremy and D'Hont, Angélique (2018). A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nature Communications, 9 (1) 2638, 2638. doi: 10.1038/s41467-018-05051-5 |
|
2018 Journal Article Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptationHenry, Robert J., Furtado, Agnelo and Rangan, Parimalan (2018). Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation. Current Opinion in Plant Biology, 45 (Pt B), 231-236. doi: 10.1016/j.pbi.2018.05.002 |
|
2018 Journal Article The challenge of analyzing the sugarcane genomeThirugnanasambandam, Prathima P., Hoang, Nam V. and Henry, Robert J. (2018). The challenge of analyzing the sugarcane genome. Frontiers in Plant Science, 9 616, 616. doi: 10.3389/fpls.2018.00616 |
|
2018 Journal Article Chloroplast phylogeny of AA genome rice speciesMohammad Moner, Ali, Furtado, Agnelo and Henry, Robert J (2018). Chloroplast phylogeny of AA genome rice species. Molecular Phylogenetics and Evolution, 127, 475-487. doi: 10.1016/j.ympev.2018.05.002 |
|
2018 Journal Article Role of genomics in promoting the utilization of plant genetic resources in genebanksWambugu, Peterson W., Ndjiondjop, Marie-Noelle and Henry, Robert J. (2018). Role of genomics in promoting the utilization of plant genetic resources in genebanks. Briefings in Functional Genomics, 17 (3), 198-206. doi: 10.1093/bfgp/ely014 |
|
2018 Journal Article Diversity and evolution of rice progenitors in AustraliaMoner, Ali M., Furtado, Agnelo, Chivers, Ian, Fox, Glen, Crayn, Darren and Henry, Robert J. (2018). Diversity and evolution of rice progenitors in Australia. Ecology and Evolution, 8 (8), 4360-4366. doi: 10.1002/ece3.3989 |
|
2018 Journal Article There's yellow, and then there's yellow-which one is YCS?Marquardt, Annelie, Wathen-Dunn, Kate, Henry, Robert J. and Botha, Frederik C. (2018). There's yellow, and then there's yellow-which one is YCS?. International Sugar Journal, 120 (1432), 304-310. |
|
2018 Journal Article De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcriptsHoang, Nam V., Furtado, Agnelo, Thirugnanasambandam, Prathima P., Botha, Frederik C. and Henry, Robert J. (2018). De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts. Heliyon, 4 (3) e00583, e00583. doi: 10.1016/j.heliyon.2018.e00583 |
|
2018 Journal Article Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to EucalyptusButler, Jakob B., Freeman, Jules S., Potts, Brad M., Vaillancourt, René E., Grattapaglia, Dario, Silva-Junior, Orzenil B., Simmons, Blake A., Healey, Adam L., Schmutz, Jeremy, Barry, Kerrie W., Lee, David J., Henry, Robert J., King, Graham J., Baten, Abdul and Shepherd, Mervyn (2018). Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus. Heredity, 121 (1), 1-18. doi: 10.1038/s41437-018-0058-1 |
|
2018 Journal Article Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine contentTran, Hue T. M., Ramaraj, Thiruvarangan, Furtado, Agnelo, Lee, L. Slade and Henry, Robert J. (2018). Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content. Plant Biotechnology Journal, 16 (10), 1756-1766. doi: 10.1111/pbi.12912 |
