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2021 Book Chapter RNA extraction from plant seedsHasan, Sharmin, Furtado, Agnelo and Henry, Robert (2021). RNA extraction from plant seeds. Comprehensive foodomics. (pp. 451-461) edited by Alejandro Cifuentes. Oxford, United Kingdom: Elsevier. doi: 10.1016/b978-0-08-100596-5.22751-0 |
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2021 Book Chapter RNA-Seq to understand transcriptomes and application in improving crop qualityKuram Tirumala, Ravikiran, Subbaiyan, Gopala Krishnan, Singh, Ashok Kumar, Furtado, Agnelo and Henry, Robert James (2021). RNA-Seq to understand transcriptomes and application in improving crop quality. Comprehensive foodomics. (pp. 472-485) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22728-5 |
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2021 Book Chapter PrefaceHossain, Mohammad Anwar, Hassan, Lutful, Md. Iftekharuddaula, Khandakar, Kumar, Arvind and Henry, Robert (2021). Preface. Molecular Breeding for Rice Abiotic Stress Tolerance and Nutritional Quality. (pp. xix-xx) Hoboken, NJ United States: John Wiley & Sons. |
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2021 Book Chapter Wheat Grain TranscriptomeRangan, Parimalan, Furtado, Agnelo and Henry, Robert (2021). Wheat Grain Transcriptome. Comprehensive Foodomics. (pp. 501-512) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22730-3 |
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2021 Book Chapter Iso-Seq long read transcriptome sequencingHoang, Nam V. and Henry, Robert J. (2021). Iso-Seq long read transcriptome sequencing. Comprehensive foodomics. (pp. 486-500) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22729-7 |
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2021 Book Molecular breeding in wheat, maize and sorghum: strategies for improving abiotic stress tolerance and yieldMohammad Anwar Hossain, Mobashwer Alam, Saman Seneweera, Sujay Rakshit and Robert Henry eds. (2021). Molecular breeding in wheat, maize and sorghum: strategies for improving abiotic stress tolerance and yield. Wallingford, United Kingdom: CABI. doi: 10.1079/9781789245431.0000 |
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2021 Book Chapter Avocado transcriptomic resourcesShaw, Lindsay, Nath, Onkar, Fletcher, Stephen, Henry, Robert, Mitter, Neena and Hayward, Alice (2021). Avocado transcriptomic resources. Comprehensive foodomics. (pp. 544-557) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier BV. doi: 10.1016/b978-0-08-100596-5.22733-9 |
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2021 Book Chapter Transcriptome of sugarcane, a highly complex polyploidThirugnanasambandam, Prathima P., Mason, Patrick J., Pazhany, Adhini S., Shanmugavel, SenthilKumar, Hoang, Nam V. and Henry, Robert J. (2021). Transcriptome of sugarcane, a highly complex polyploid. Comprehensive foodomics. (pp. 614-626) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22734-0 |
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2021 Book Chapter Introduction to TranscriptomicsHenry, Robert J. (2021). Introduction to Transcriptomics. Comprehensive Foodomics. (pp. 439-439) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-12-816395-5.00002-2 |
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2021 Book Chapter RNA extraction for transcriptome analysisFurtado, Agnelo and Henry, Robert J. (2021). RNA extraction for transcriptome analysis. Comprehensive foodomics. (pp. 440-450) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22727-3 |
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2020 Journal Article Comparison of long-read methods for sequencing and assembly of a plant genomeMurigneux, Valentine, Rai, Subash Kumar, Furtado, Agnelo, Bruxner, Timothy J. C., Tian, Wei, Harliwong, Ivon, Wei, Hanmin, Yang, Bicheng, Ye, Qianyu, Anderson, Ellis, Mao, Qing, Drmanac, Radoje, Wang, Ou, Peters, Brock A, Xu, Mengyang, Wu, Pei, Topp, Bruce, Coin, Lachlan J. M. and Henry, Robert J. (2020). Comparison of long-read methods for sequencing and assembly of a plant genome. GigaScience, 9 (12) giaa146. doi: 10.1093/gigascience/giaa146 |
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2020 Journal Article Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and rootsMason, Patrick J., Furtado, Agnelo, Marquardt, Annelie, Hodgson-Kratky, Katrina, Hoang, Nam V., Botha, Frederik C., Papa, Gabriella, Mortimer, Jenny C., Simmons, Blake and Henry, Robert J. (2020). Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots. Biotechnology for Biofuels, 13 (1) 201, 1-19. doi: 10.1186/s13068-020-01837-2 |
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2020 Journal Article Pathways of photosynthesis in non-leaf tissuesHenry, Robert J., Furtado, Agnelo and Rangan, Parimalan (2020). Pathways of photosynthesis in non-leaf tissues. Biology, 9 (12) 438, 1-13. doi: 10.3390/biology9120438 |
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2020 Journal Article Sequence variants linked to key traits in interspecific crosses between African and Asian riceBadro, Hayba, Ndjiondjop, Marie-Noelle, Furtado, Agnelo and Henry, Robert (2020). Sequence variants linked to key traits in interspecific crosses between African and Asian rice. Plants, 9 (12) 1653, 1-21. doi: 10.3390/plants9121653 |
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2020 Book Chapter Coffee bean transcriptomeCheng, Bing and Henry, Robert J. (2020). Coffee bean transcriptome. Reference Module in Food Science. (pp. 627-639) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22736-4 |
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2020 Journal Article Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar contentPerlo, Virginie, Botha, Frederik C., Furtado, Agnelo, Hodgson‐Kratky, Katrina and Henry, Robert J. (2020). Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content. Plant Direct, 4 (11) e00276, e00276. doi: 10.1002/pld3.276 |
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2020 Journal Article Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice productionMoner, Ali Mohammad, Furtado, Agnelo and Henry, Robert J. (2020). Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production. BMC Plant Biology, 20 (1) 472, 1-9. doi: 10.1186/s12870-020-02689-6 |
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2020 Journal Article Mobilizing crop biodiversityMcCouch, Susan, Navabi, Zahra Katy, Abberton, Michael, Anglin, Noelle L., Barbieri, Rosa Lia, Baum, Michael, Bett, Kirstin, Booker, Helen, Brown, Gerald L., Bryan, Glenn J., Cattivelli, Luigi, Charest, David, Eversole, Kellye, Freitas, Marcelo, Ghamkhar, Kioumars, Grattipaglia, Dario, Henry, Robert, Valadares Inglis, Maria Cleria, Islam, Tofazzal, Kehel, Zakaria, Kersey, Paul J., King, Graham J., Kresovich, Stephen, Marden, Emily, Mayes, Sean, Ndjiondjiop, Marie Noelle, Nguyen, Henry T., Paiva, Samuel Rezende, Papa, Roberto ... Rieseberg, Loren H. (2020). Mobilizing crop biodiversity. Molecular Plant, 13 (10), 1341-1344. doi: 10.1016/j.molp.2020.08.011 |
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2020 Journal Article Chromosome-scale assembly and annotation of the macadamia genome (Macadamia integrifolia HAES 741)Nock, Catherine J., Baten, Abdul, Mauleon, Ramil, Langdon, Kirsty S., Topp, Bruce, Hardner, Craig, Furtado, Agnelo, Henry, Robert J. and King, Graham J. (2020). Chromosome-scale assembly and annotation of the macadamia genome (Macadamia integrifolia HAES 741). G3: Genes, Genomes, Genetics, 10 (10), 3497-3504. doi: 10.1534/g3.120.401326 |
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2020 Journal Article Differential expression in leaves of Saccharum genotypes contrasting in biomass production provides evidence of genes involved in carbon partitioningCorrer, Fernando Henrique, Hosaka, Guilherme Kenichi, Barreto, Fernanda Zatti, Valadão, Isabella Barros, Balsalobre, Thiago Willian Almeida, Furtado, Agnelo, Henry, Robert James, Carneiro, Monalisa Sampaio and Margarido, Gabriel Rodrigues Alves (2020). Differential expression in leaves of Saccharum genotypes contrasting in biomass production provides evidence of genes involved in carbon partitioning. BMC Genomics, 21 (1) 673, 673. doi: 10.1186/s12864-020-07091-y |
