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2021

Journal Article

Genetics and genomics of African rice (Oryza glaberrima Steud) domestication

Wambugu, Peterson W., Ndjiondjop, Marie-Noelle and Henry, Robert (2021). Genetics and genomics of African rice (Oryza glaberrima Steud) domestication. Rice, 14 (1) 6, 6. doi: 10.1186/s12284-020-00449-6

Genetics and genomics of African rice (Oryza glaberrima Steud) domestication

2021

Book Chapter

Isolation of genes/quantitative trait loci for drought stress tolerance in maize

Kumar, Pardeep, Choudhary, Mukesh, Jat, B. S., Dagla, M. C., Singh, Vishal, Das, Abhijit Kumar, Kumar, Santosh, Longmei, Ningthaipuilu, Henry, Robert J. and Wani, Shabir Hussain (2021). Isolation of genes/quantitative trait loci for drought stress tolerance in maize. Molecular breeding in wheat, maize and sorghum: strategies for improving abiotic stress tolerance and yield. (pp. 267-281) edited by Mohammad Anwar Hossain, Mobashwer Alam, Saman Seneweera, Sujay Rakshit and Robert Henry. Wallingford, United Kingdom: CABI. doi: 10.1079/9781789245431.0015

Isolation of genes/quantitative trait loci for drought stress tolerance in maize

2021

Journal Article

Effect of sugar feedback regulation on major genes and proteins of photosynthesis in sugarcane leaves

Marquardt, Annelie, Henry, Robert J. and Botha, Frederik C. (2021). Effect of sugar feedback regulation on major genes and proteins of photosynthesis in sugarcane leaves. Plant Physiology and Biochemistry, 158, 321-333. doi: 10.1016/j.plaphy.2020.11.022

Effect of sugar feedback regulation on major genes and proteins of photosynthesis in sugarcane leaves

2021

Book Chapter

RNA extraction from plant seeds

Hasan, Sharmin, Furtado, Agnelo and Henry, Robert (2021). RNA extraction from plant seeds. Comprehensive foodomics. (pp. 451-461) edited by Alejandro Cifuentes. Oxford, United Kingdom: Elsevier. doi: 10.1016/b978-0-08-100596-5.22751-0

RNA extraction from plant seeds

2021

Book Chapter

RNA-Seq to understand transcriptomes and application in improving crop quality

Kuram Tirumala, Ravikiran, Subbaiyan, Gopala Krishnan, Singh, Ashok Kumar, Furtado, Agnelo and Henry, Robert James (2021). RNA-Seq to understand transcriptomes and application in improving crop quality. Comprehensive foodomics. (pp. 472-485) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22728-5

RNA-Seq to understand transcriptomes and application in improving crop quality

2021

Book Chapter

Preface

Hossain, Mohammad Anwar, Hassan, Lutful, Md. Iftekharuddaula, Khandakar, Kumar, Arvind and Henry, Robert (2021). Preface. Molecular Breeding for Rice Abiotic Stress Tolerance and Nutritional Quality. (pp. xix-xx) Hoboken, NJ United States: John Wiley & Sons.

Preface

2021

Book Chapter

Wheat Grain Transcriptome

Rangan, Parimalan, Furtado, Agnelo and Henry, Robert (2021). Wheat Grain Transcriptome. Comprehensive Foodomics. (pp. 501-512) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22730-3

Wheat Grain Transcriptome

2021

Book Chapter

Iso-Seq long read transcriptome sequencing

Hoang, Nam V. and Henry, Robert J. (2021). Iso-Seq long read transcriptome sequencing. Comprehensive foodomics. (pp. 486-500) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22729-7

Iso-Seq long read transcriptome sequencing

2021

Book

Molecular breeding in wheat, maize and sorghum: strategies for improving abiotic stress tolerance and yield

Mohammad Anwar Hossain, Mobashwer Alam, Saman Seneweera, Sujay Rakshit and Robert Henry eds. (2021). Molecular breeding in wheat, maize and sorghum: strategies for improving abiotic stress tolerance and yield. Wallingford, United Kingdom: CABI. doi: 10.1079/9781789245431.0000

Molecular breeding in wheat, maize and sorghum: strategies for improving abiotic stress tolerance and yield

2021

Book Chapter

Avocado transcriptomic resources

Shaw, Lindsay, Nath, Onkar, Fletcher, Stephen, Henry, Robert, Mitter, Neena and Hayward, Alice (2021). Avocado transcriptomic resources. Comprehensive foodomics. (pp. 544-557) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier BV. doi: 10.1016/b978-0-08-100596-5.22733-9

Avocado transcriptomic resources

2021

Book Chapter

Transcriptome of sugarcane, a highly complex polyploid

Thirugnanasambandam, Prathima P., Mason, Patrick J., Pazhany, Adhini S., Shanmugavel, SenthilKumar, Hoang, Nam V. and Henry, Robert J. (2021). Transcriptome of sugarcane, a highly complex polyploid. Comprehensive foodomics. (pp. 614-626) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22734-0

Transcriptome of sugarcane, a highly complex polyploid

2021

Book Chapter

Introduction to Transcriptomics

Henry, Robert J. (2021). Introduction to Transcriptomics. Comprehensive Foodomics. (pp. 439-439) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-12-816395-5.00002-2

Introduction to Transcriptomics

2021

Book Chapter

RNA extraction for transcriptome analysis

Furtado, Agnelo and Henry, Robert J. (2021). RNA extraction for transcriptome analysis. Comprehensive foodomics. (pp. 440-450) edited by Alejandro Cifuentes. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22727-3

RNA extraction for transcriptome analysis

2021

Book Chapter

Development of Transcriptome Analysis Methods

Rangan, Parimalan, Furtado, Agnelo, Henry, Robert and Gaikwad, Ambika (2021). Development of Transcriptome Analysis Methods. Comprehensive Foodomics. (pp. 462-471) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22752-2

Development of Transcriptome Analysis Methods

2020

Journal Article

Comparison of long-read methods for sequencing and assembly of a plant genome

Murigneux, Valentine, Rai, Subash Kumar, Furtado, Agnelo, Bruxner, Timothy J. C., Tian, Wei, Harliwong, Ivon, Wei, Hanmin, Yang, Bicheng, Ye, Qianyu, Anderson, Ellis, Mao, Qing, Drmanac, Radoje, Wang, Ou, Peters, Brock A, Xu, Mengyang, Wu, Pei, Topp, Bruce, Coin, Lachlan J. M. and Henry, Robert J. (2020). Comparison of long-read methods for sequencing and assembly of a plant genome. GigaScience, 9 (12) giaa146. doi: 10.1093/gigascience/giaa146

Comparison of long-read methods for sequencing and assembly of a plant genome

2020

Journal Article

Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots

Mason, Patrick J., Furtado, Agnelo, Marquardt, Annelie, Hodgson-Kratky, Katrina, Hoang, Nam V., Botha, Frederik C., Papa, Gabriella, Mortimer, Jenny C., Simmons, Blake and Henry, Robert J. (2020). Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots. Biotechnology for Biofuels, 13 (1) 201, 1-19. doi: 10.1186/s13068-020-01837-2

Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots

2020

Journal Article

Pathways of photosynthesis in non-leaf tissues

Henry, Robert J., Furtado, Agnelo and Rangan, Parimalan (2020). Pathways of photosynthesis in non-leaf tissues. Biology, 9 (12) 438, 1-13. doi: 10.3390/biology9120438

Pathways of photosynthesis in non-leaf tissues

2020

Journal Article

Sequence variants linked to key traits in interspecific crosses between African and Asian rice

Badro, Hayba, Ndjiondjop, Marie-Noelle, Furtado, Agnelo and Henry, Robert (2020). Sequence variants linked to key traits in interspecific crosses between African and Asian rice. Plants, 9 (12) 1653, 1-21. doi: 10.3390/plants9121653

Sequence variants linked to key traits in interspecific crosses between African and Asian rice

2020

Book Chapter

Coffee bean transcriptome

Cheng, Bing and Henry, Robert J. (2020). Coffee bean transcriptome. Reference Module in Food Science. (pp. 627-639) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22736-4

Coffee bean transcriptome

2020

Journal Article

Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content

Perlo, Virginie, Botha, Frederik C., Furtado, Agnelo, Hodgson‐Kratky, Katrina and Henry, Robert J. (2020). Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content. Plant Direct, 4 (11) e00276, e00276. doi: 10.1002/pld3.276

Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content