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2009 Journal Article Complete genome sequence of Rhodothermus marinus type strain (R-10(T))Nolan, Matt, Gronow, Sabine, Lapidus, Alla, Ivanova, Natalia, Copeland, Alex, Lucas, Susan, Del Rio, Tijana Glavina, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Sims, David, Meincke, Linda, Bruce, David, Goodwin, Lynne, Brettin, Thomas, Han, Cliff, Detter, John C., Ovchinikova, Galina, Pati, Amrita, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred ... Chain, Patrick (2009). Complete genome sequence of Rhodothermus marinus type strain (R-10(T)). Standards in Genomic Sciences, 1 (3), 283-291. doi: 10.4056/sigs46736 |
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2009 Journal Article Complete genome sequence of Sanguibacter keddieii type strain (ST-74(T))Ivanova, Natalia, Sikorski, Johannes, Sims, David, Brettin, Thomas, Detter, John C., Han, Cliff, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Pati, Amrita, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, D'haeseleer, Patrik, Chain, Patrick, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Goeker, Markus, Pukall, Ruediger ... Kyrpides, Nikos C. (2009). Complete genome sequence of Sanguibacter keddieii type strain (ST-74(T)). Standards in Genomic Sciences, 1 (2), 110-118. doi: 10.4056/sigs16197 |
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2009 Journal Article Complete genome sequence of Eggerthella lenta type strain (VPI 0255(T))Saunders, Elizabeth, Pukall, Ruediger, Abt, Birte, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C. ... Han, Cliff (2009). Complete genome sequence of Eggerthella lenta type strain (VPI 0255(T)). Standards in Genomic Sciences, 1 (2), 174-182. doi: 10.4056/sigs.33592 |
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2009 Journal Article Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134(T))Pukall, Ruedieger, Gehrich-Schroeter, Gabriele, Lapidus, Alla, Nolan, Matt, Del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Copeland, Alex, Saunders, Elizabeth, Brettin, Thomas, Detter, John C., Bruce, David, Goodwin, Lynne, Pati, Amrita, Ivanova, Natalia, Mavrommatis, Konstantinos, Ovchinnikova, Galina, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Goeker, Markus, Bristow, Jim ... Han, Cliff (2009). Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134(T)). Standards in Genomic Sciences, 1 (3), 262-269. doi: 10.4056/sigs.41646 |
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2009 Journal Article Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T)Mavrommatis, Konstantinos, Gronow, Sabine, Saunders, Elizabeth, Land, Miriam, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Pati, Amrita, Ivanova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Detter, John C., Han, Cliff, Bristow, James, Goeker, Markus, Rohde, Manfred ... Hugenholtz, Philip (2009). Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T). Standards in Genomic Sciences, 1 (2), 101-109. doi: 10.4056/sigs.15195 |
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2009 Journal Article Complete genome sequence of Halogeometricum borinquense type strain (PR3(T))Malfatti, Stephanie, Tindall, Brian J., Schneider, Susanne, Faehnrich, Regine, Lapidus, Alla, LaButtii, Kurt, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Anderson, Iain, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, D'haeseleer, Patrik, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C. ... Chain, Patrick (2009). Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)). Standards in Genomic Sciences, 1 (2), 150-158. doi: 10.4056/sigs.23264 |
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2009 Journal Article Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10(T))Lapidus, Alla, Pukall, Ruediger, LaButtii, Kurt, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Rohde, Manfred, Goeker, Markus, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, D'haeseleer, Patrik, Chain, Patrick, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C. and Klenk, Hans-Peter (2009). Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10(T)). Standards in Genomic Sciences, 1 (1), 3-11. doi: 10.4056/sigs.492 |
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2009 Journal Article Complete genome sequence of Desulfomicrobium baculatum type strain (X-T)Copeland, Alex, Spring, Stefan, Goeker, Markus, Schneider, Susanne, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C., Han, Cliff ... Lucas, Susan (2009). Complete genome sequence of Desulfomicrobium baculatum type strain (X-T). Standards in Genomic Sciences, 1 (1), 29-37. doi: 10.4056/sigs.13134 |
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2009 Journal Article Complete genome sequence of Kangiella koreensis type strain (SW-125(T))Han, Cliff, Sikorski, Johannes, Lapidus, Alla, Nolan, Matt, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Copeland, Alex, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Brettin, Thomas, Goeker, Markus, Tindall, Brian J., Bristow, Jim ... Detter, John C. (2009). Complete genome sequence of Kangiella koreensis type strain (SW-125(T)). Standards in Genomic Sciences, 1 (3), 226-233. doi: 10.4056/sigs.36635 |
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2009 Journal Article Complete genome sequence of Actinosynnema mirum type strain (101(T))Land, Miriam, Lapidus, Alla, Mayilraj, Shanmugam, Chen, Feng, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Chertkov, Olga, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Rohde, Manfred, Goeker, Markus, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Brettin, Thomas, Detter, John C., Han, Cliff, Chain, Patrick, Tindall, Brian J. ... Klenk, Hans-Peter (2009). Complete genome sequence of Actinosynnema mirum type strain (101(T)). Standards in Genomic Sciences, 1 (1), 46-53. doi: 10.4056/sigs.21137 |
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2009 Journal Article Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883(T))Chovatia, Mansi, Sikorski, Johannes, Schroeder, Maren, Lapidus, Alla, Nolan, Matt, Tice, Hope, Del Rio, Tijana Glavina, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Detter, John C., Brettin, Thomas, Rohde, Manfred ... Eisen, Jonathan A. (2009). Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883(T)). Standards in Genomic Sciences, 1 (3), 254-261. doi: 10.4056/sigs.40645 |
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2008 Journal Article A bioinformatician's guide to metagenomicsKunin, V., Copeland, A., Lapidus, A., Mavromatis, K. and Hugenholtz, P. (2008). A bioinformatician's guide to metagenomics. Microbiology and Molecular Biology Reviews, 72 (4), 557-578. doi: 10.1128/MMBR.00009-08 |
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2008 Journal Article A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cellsWrighton, Kelly C., Agbo, Peter, Warnecke, Falk, Weber, Karrie A., Brodie, Eoin L., DeSantis, Todd Z., Hugenholtz, Philip, Andersen, Gary L. and Coates, John D. (2008). A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. The ISME Journal, 2 (11), 1146-1156. doi: 10.1038/ismej.2008.48 |
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2008 Journal Article Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removalPeterson, S. Brook, Warnecke, Falk, Madejska, Julita, McMahon, Katherine D. and Hugenholtz, Philip (2008). Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal. Environmental Microbiology, 10 (10), 2692-2703. doi: 10.1111/j.1462-2920.2008.01690.x |
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2008 Journal Article A renaissance for the pioneering 16S rRNA geneTringe, SG and Hugenholtz, P (2008). A renaissance for the pioneering 16S rRNA gene. Current Opinions in Microbiology, 11 (5), 442-446. doi: 10.1016/j.mib.2008.09.011 |
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2008 Journal Article Microbiology: MetagenomicsHugenhotz, Philip and Tyson, Gene W. (2008). Microbiology: Metagenomics. Nature, 455 (7212), 481-483. doi: 10.1038/455481a |
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2008 Journal Article Evolution of Hyaluronic Acid Synthesis (has) Operon in Streptococcus zooepidemicus and other Pathogenic StreptococciLars M. Blank, Philip Hugenholtz and Nielsen, Lars K. (2008). Evolution of Hyaluronic Acid Synthesis (has) Operon in Streptococcus zooepidemicus and other Pathogenic Streptococci. Journal of Molecular Evolution, 67 (1), 13-22. doi: 10.1007/s00239-008-9117-1 |
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2008 Journal Article Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial matKunin, Victor, Raes, Jeroen, Harris, J. Kirk, Spear, John R., Walker, Jeffrey J., Ivanova, Natalia, Von Mering, Christian, Bebout, Brad M., Pace, Norman R., Bork, Peer and Hugenholtz, Philip (2008). Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Molecular Systems Biology, 4 (1) 198, 198. doi: 10.1038/msb.2008.35 |
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2008 Journal Article A korarchaeal genome reveals insights into the evolution of the ArchaeaElkins, James G., Podar, Mircea, Graham, David E., Makarova, Kira S., Wolf, Yuri, Randau, Lennart, Hedlund, Brian P., Brochier-Armanet, Celine, Kunin, Victor, Anderson, Iain, Lapidus, Alla, Goltsman, Eugene, Barry, Kerrie, Koonin, Eugene V., Hugenholtz, Philip, Kyrpides, Nikos, Wanner, Gerhard, Richardson, Paul, Keller, Martin and Stetter, Karl O. (2008). A korarchaeal genome reveals insights into the evolution of the Archaea. Proceedings of the National Academy of Sciences of the United States of America, 105 (23), 8102-8107. doi: 10.1073/pnas.0801980105 |
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2008 Journal Article The minimum information about a genome sequence (MIGS) specificationField, Dawn, Garrity, George, Gray, Tanya, Morrison, Norman, Selengut, Jeremy, Sterk, Peter, Tatusova, Tatiana, Thomson, Nicholas, Allen, Michael J., Angiuoli, Samuel V., Ashburner, Michael, Axelrod, Nelson, Baldauf, Sandra, Ballard, Stuart, Boore, Jeffrey, Cochrane, Guy, Cole, James, Dawyndt, Peter, De Vos, Paul, dePamphilis, Claude, Edwards, Robert, Faruque, Nadeem, Feldman, Robert, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Goldstein, Philip, Guralnick, Robert, Haft, Dan ... Wipat, Anil (2008). The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26 (5), 541-547. doi: 10.1038/nbt1360 |
