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2025 Journal Article Segmentation of the human tongue musculature using MRI: Field guide and validation in motor neuron diseaseShaw, Thomas B., Ribeiro, Fernanda L., Zhu, Xiangyun, Aiken, Patrick, Bollmann, Saskia, Bollmann, Steffen, Chang, Jeryn, Chidley, Kali, Dempsey-Jones, Harriet, Eftekhari, Zeinab, Gillespie, Jennifer, Henderson, Robert D., Kiernan, Matthew C., Ktena, Ira, McCombe, Pamela A., Ngo, Shyuan T., Taubert, Shana T., Whelan, Brooke-Mai, Ye, Xincheng, Steyn, Frederik J., Tu, Sicong and Barth, Markus (2025). Segmentation of the human tongue musculature using MRI: Field guide and validation in motor neuron disease. Computers in Biology and Medicine, 196 (Pt B) 110824, 110824. doi: 10.1016/j.compbiomed.2025.110824 |
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2025 Journal Article Deciphering hypothalamic pathology in ALS: insights into non-motor symptoms and disease progressionChang, Jeryn, Teo, Annissa H., Shaw, Thomas B., Dupuis, Luc, Ngo, Shyuan T. and Steyn, Frederik J. (2025). Deciphering hypothalamic pathology in ALS: insights into non-motor symptoms and disease progression. eBioMedicine, 118 105845, 105845-118. doi: 10.1016/j.ebiom.2025.105845 |
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2025 Journal Article Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphologyEhrhardt, Shane E, Wards, Yohan, Shaw, Thomas B, Garner, Kelly G, Bollmann, Steffen, Mattingley, Jason B, Dux, Paul E and Filmer, Hannah L (2025). Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphology. Cerebral Cortex, 35 (8) bhaf229, 8. doi: 10.1093/cercor/bhaf229 |
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2025 Journal Article Reliability and Reproducibility of Metabolite Quantification Using 1H MRS in the Human Brain at 3 T and 7 TEftekhari, Zeinab, Shaw, Thomas B., Deelchand, Dinesh K., Marjańska, Małgorzata, Bogner, Wolfgang and Barth, Markus (2025). Reliability and Reproducibility of Metabolite Quantification Using 1H MRS in the Human Brain at 3 T and 7 T. NMR in Biomedicine, 38 (8) e70087, e70087-8. doi: 10.1002/nbm.70087 |
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2025 Journal Article An annotated multi-site and multi-contrast magnetic resonance imaging dataset for the study of the human tongue musculatureRibeiro, Fernanda L., Zhu, Xiangyun, Ye, Xincheng, Tu, Sicong, Ngo, Shyuan T., Henderson, Robert D., Steyn, Frederik J., Kiernan, Matthew C., Barth, Markus, Bollmann, Steffen and Shaw, Thomas B. (2025). An annotated multi-site and multi-contrast magnetic resonance imaging dataset for the study of the human tongue musculature. Scientific Data, 12 (1) 790, 790. doi: 10.1038/s41597-025-05092-8 |
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2025 Journal Article An fMRI dataset for appetite neural correlates in people living with Motor Neuron DiseaseChang, Jeryn, Lv, JingLei, Guo, Christine C., Lucia, Diana, Bollmann, Saskia, Garner, Kelly, McCombe, Pamela A., Henderson, Robert D., Shaw, Thomas B., Steyn, Frederik J. and Ngo, Shyuan T. (2025). An fMRI dataset for appetite neural correlates in people living with Motor Neuron Disease. Scientific Data, 12 (1) 466, 466. doi: 10.1038/s41597-025-04828-w |
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2025 Journal Article Appetite loss in patients with motor neuron disease: impact on weight loss and neural correlates of visual food cuesChang, Jeryn, Shaw, Thomas B., McCombe, Pamela A., Henderson, Robert D., Lucia, Diana, Guo, Christine C., Lv, Jinglei, Garner, Kelly, Bollmann, Saskia, Ngo, Shyuan T. and Steyn, Frederik J. (2025). Appetite loss in patients with motor neuron disease: impact on weight loss and neural correlates of visual food cues. Brain Communications, 7 (2) fcaf111, 1-14. doi: 10.1093/braincomms/fcaf111 |
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2025 Journal Article Factors associated with true-positive and false-positive diagnoses of behavioural variant frontotemporal dementia in 100 consecutive referrals from specialist physiciansFlavell, Joshua, Ahern, Emily G. M., Logan, Benignus, Shaw, Thomas B., Adam, Robert J., McElligott, Caitlin A. T. and Nestor, Peter J. (2025). Factors associated with true-positive and false-positive diagnoses of behavioural variant frontotemporal dementia in 100 consecutive referrals from specialist physicians. European Journal of Neurology, 32 (1) e70036, e70036-1. doi: 10.1111/ene.70036 |
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2024 Journal Article A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution T<sub>2</sub>‐weighted MRICanada, Kelsey L., Mazloum‐Farzaghi, Negar, Rådman, Gustaf, Adams, Jenna N., Bakker, Arnold, Baumeister, Hannah, Berron, David, Bocchetta, Martina, Carr, Valerie A., Dalton, Marshall A., de Flores, Robin, Keresztes, Attila, La Joie, Renaud, Mueller, Susanne G., Raz, Naftali, Santini, Tales, Shaw, Thomas, Stark, Craig E. L., Tran, Tammy T., Wang, Lei, Wisse, Laura E. M., Wuestefeld, Anika, Yushkevich, Paul A., Olsen, Rosanna K., Daugherty, Ana M. and the Hippocampal Subfields Group (2024). A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution T2‐weighted MRI. Human Brain Mapping, 45 (15) e70004, 1-19. doi: 10.1002/hbm.70004 |
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2024 Journal Article VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography dataXu, Marshall, Ribeiro, Fernanda L., Barth, Markus, Bernier, Michaël, Bollmann, Steffen, Chatterjee, Soumick, Cognolato, Francesco, Gulban, Omer F., Itkyal, Vaibhavi, Liu, Siyu, Mattern, Hendrik, Polimeni, Jonathan R., Shaw, Thomas B., Speck, Oliver and Bollmann, Saskia (2024). VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data. Aperture Neuro, 4, 1-13. doi: 10.52294/001c.123217 |
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2024 Journal Article Long-term improvement in hippocampal-dependent learning ability in healthy, aged individuals following high intensity interval trainingBlackmore, Daniel G., Schaumberg, Mia A., Ziaei, Maryam, Belford, Samuel, To, Xuan Vinh, O’Keeffe, Imogen, Bernard, Anne, Mitchell, Jules, Hume, Emily, Rose, Grace L., Shaw, Thomas, York, Ashley, Barth, Markus, Cooper, Elizabeth J., Skinner, Tina L., Nasrallah, Fatima, Riek, Stephan and Bartlett, Perry F. (2024). Long-term improvement in hippocampal-dependent learning ability in healthy, aged individuals following high intensity interval training. Aging and Disease, 16 (3), 1732-1754. doi: 10.14336/AD.2024.0642 |
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2024 Journal Article Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimagingRenton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (2), 804-808. doi: 10.1038/s41592-023-02145-x |
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2024 Journal Article Neurochemical predictors of generalised learning induced by brain stimulation and trainingEhrhardt, Shane E., Wards, Yohan, Rideaux, Reuben, Marjańska, Małgorzata, Jin, Jin, Cloos, Martijn A., Deelchand, Dinesh K., Zöllner, Helge J., Saleh, Muhammad G., Hui, Steve C. N., Ali, Tonima, Shaw, Thomas B., Barth, Markus, Mattingley, Jason B., Filmer, Hannah L. and Dux, Paul E. (2024). Neurochemical predictors of generalised learning induced by brain stimulation and training. The Journal of Neuroscience, 44 (21) e1676232024, 1-15. doi: 10.1523/jneurosci.1676-23.2024 |
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2023 Journal Article Individual differences in decision strategy relate to neurochemical excitability and cortical thicknessFilmer, Hannah L., Loughnan, Kathleen, Seeto, Jennifer X., Ballard, Timothy, Ehrhardt, Shane E., Shaw, Thomas, Wards, Yohan, Rideaux, Reuben, Leow, Li-Ann, Sewell, David and Dux, Paul E. (2023). Individual differences in decision strategy relate to neurochemical excitability and cortical thickness. The Journal of Neuroscience, 43 (42), 7006-7015. doi: 10.1523/jneurosci.1086-23.2023 |
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2023 Journal Article HumanBrainAtlas: an in vivo MRI dataset for detailed segmentationsSchira, Mark M., Isherwood, Zoey J., Kassem, Mustafa S., Barth, Markus, Shaw, Thomas B., Roberts, Michelle M. and Paxinos, George (2023). HumanBrainAtlas: an in vivo MRI dataset for detailed segmentations. Brain Structure and Function, 228 (8), 1-15. doi: 10.1007/s00429-023-02653-8 |
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2022 Journal Article Lower hypothalamic volume with lower BMI is associated with shorter survival in patients with ALSChang, Jeryn, Shaw, Thomas B., Holdom, Cory J., McCombe, Pamela A., Henderson, Robert D., Fripp, Jurgen, Barth, Markus, Guo, Christine C., Ngo, Shyuan T. and Steyn, Frederik J. (2022). Lower hypothalamic volume with lower BMI is associated with shorter survival in patients with ALS. European Journal of Neurology, 30 (1), 57-68. doi: 10.1111/ene.15589 |
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2022 Journal Article Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7TChang, Jeryn, Steyn, Frederik, Ngo, Shyuan, Henderson, Robert, Guo, Christine, Bollmann, Steffen, Fripp, Jurgen, Barth, Markus and Shaw, Thomas (2022). Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T. Journal of Open Source Software, 7 (76), 4368. doi: 10.21105/joss.04368 |
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2022 Journal Article Enhanced semantic memory in a case of highly superior autobiographical memoryFord, Lucy, Shaw, Thomas B., Mattingley, Jason B. and Robinson, Gail A. (2022). Enhanced semantic memory in a case of highly superior autobiographical memory. Cortex, 151, 1-14. doi: 10.1016/j.cortex.2022.02.007 |
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2021 Journal Article Centering inclusivity in the design of online conferences—An OHBM–Open Science perspectiveLevitis, Elizabeth, van Praag, Cassandra D Gould, Gau, Rémi, Heunis, Stephan, DuPre, Elizabeth, Kiar, Gregory, Bottenhorn, Katherine L, Glatard, Tristan, Nikolaidis, Aki, Whitaker, Kirstie Jane, Mancini, Matteo, Niso, Guiomar, Afyouni, Soroosh, Alonso-Ortiz, Eva, Appelhoff, Stefan, Arnatkeviciute, Aurina, Atay, Selim Melvin, Auer, Tibor, Baracchini, Giulia, Bayer, Johanna M M, Beauvais, Michael J S, Bijsterbosch, Janine D, Bilgin, Isil P, Bollmann, Saskia, Bollmann, Steffen, Botvinik-Nezer, Rotem, Bright, Molly G, Calhoun, Vince D, Chen, Xiao ... Maumet, Camille (2021). Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective. GigaScience, 10 (8) giab051. doi: 10.1093/gigascience/giab051 |
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2021 Journal Article Brainhack: Developing a culture of open, inclusive, community-driven neuroscienceGau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L., Bilgin, Isil P., Yang, Yu-Fang, Huntenburg, Julia M., Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn A., Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P., Huijser, Dorien C., Sandström, Malin S., Herholz, Peer, Nastase, Samuel A., Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael ... Zuo, Xi-Nian (2021). Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron, 109 (11), 1769-1775. doi: 10.1016/j.neuron.2021.04.001 |
