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2025

Journal Article

Single-cell Rapid Capture Hybridization sequencing to reliably detect isoform usage and coding mutations in targeted genes

Peng, Hongke, Jabbari, Jafar S., Tian, Luyi, Wang, Changqing, You, Yupei, Chua, Chong Chyn, Anstee, Natasha S., Amin, Noorul, Wei, Andrew H., Davidson, Nadia, Roberts, Andrew W., Huang, David, Ritchie, Matthew E and Thijssen, Rachel (2025). Single-cell Rapid Capture Hybridization sequencing to reliably detect isoform usage and coding mutations in targeted genes. Genome Research, gr.279322.124. doi: 10.1101/gr.279322.124

Single-cell Rapid Capture Hybridization sequencing to reliably detect isoform usage and coding mutations in targeted genes

2024

Journal Article

Flexiplex: a versatile demultiplexer and search tool for omics data

Cheng, Oliver, Ling, Min Hao, Wang, Changqing, Wu, Shuyi, Ritchie, Matthew E., Goke, Jonathan, Amin, Noorul and Davidson, Nadia M. (2024). Flexiplex: a versatile demultiplexer and search tool for omics data. Bioinformatics, 40 (3) btae102, 3. doi: 10.1093/bioinformatics/btae102

Flexiplex: a versatile demultiplexer and search tool for omics data

2024

Journal Article

Single-cell Rapid Capture Hybridization sequencing (scRaCH-seq) to reliably detect isoform usage and coding mutations in targeted genes at a single-cell level

Peng, Hongke, Jabbari, Jafar S., Tian, Luyi, Chua, Chong Chyn, Natasha S. Anstee, Amin, Noorul, Wei, Andrew H., Davidson, Nadia M., Roberts, Andrew W., Huang, David C. S., Ritchie, Matthew E. and Thijssen, Rachel (2024). Single-cell Rapid Capture Hybridization sequencing (scRaCH-seq) to reliably detect isoform usage and coding mutations in targeted genes at a single-cell level. bioRxiv, 1-25. doi: 10.1101/2024.01.30.577942

Single-cell Rapid Capture Hybridization sequencing (scRaCH-seq) to reliably detect isoform usage and coding mutations in targeted genes at a single-cell level

2021

Journal Article

FexRNA: exploratory data analysis and feature selection of non-coding RNA

Amin, Noorul, McGrath, Annette and Chen, Yi-Ping Phoebe (2021). FexRNA: exploratory data analysis and feature selection of non-coding RNA. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 18 (6), 2795-2801. doi: 10.1109/tcbb.2021.3057128

FexRNA: exploratory data analysis and feature selection of non-coding RNA

2020

Journal Article

Author Correction: Evaluation of deep learning in non-coding RNA classification

Amin, Noorul, McGrath, Annette and Chen, Yi-Ping Phoebe (2020). Author Correction: Evaluation of deep learning in non-coding RNA classification. Nature Machine Intelligence, 2 (4), 236-236. doi: 10.1038/s42256-019-0143-z

Author Correction: Evaluation of deep learning in non-coding RNA classification

2020

Journal Article

Reply to: LncADeep performance on full-length transcripts

Amin, Noorul, McGrath, Annette and Chen, Yi-Ping Phoebe (2020). Reply to: LncADeep performance on full-length transcripts. Nature Machine Intelligence, 3 (3), 196-196. doi: 10.1038/s42256-019-0107-3

Reply to: LncADeep performance on full-length transcripts

2019

Journal Article

Evaluation of deep learning in non-coding RNA classification

Amin, Noorul, McGrath, Annette and Chen, Yi-Ping Phoebe (2019). Evaluation of deep learning in non-coding RNA classification. Nature Machine Intelligence, 1 (5), 246-256. doi: 10.1038/s42256-019-0051-2

Evaluation of deep learning in non-coding RNA classification

2015

Journal Article

Distance-constraint k-nearest neighbor searching in mobile sensor networks

Han, Yongkoo, Park, Kisung, Hong, Jihye, Ulamin, Noor and Lee, Young-Koo (2015). Distance-constraint k-nearest neighbor searching in mobile sensor networks. Sensors, 15 (8), 18209-18228. doi: 10.3390/s150818209

Distance-constraint k-nearest neighbor searching in mobile sensor networks