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2024 Other Outputs The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen.White, Rhys T., Ashcroft, Melinda A., Bauer, Michelle J., Bell, Jan, Butkiewicz, Dominika, Álvarez-Fraga, Laura, Gibson, Justine S., Kidsley, Amanda K., Mollinger, Joanne L., Peters, Kate M., Phan, Duy, Roberts, Leah W., Rogers, Benjamin, Schembri, Mark, Trott, Darren J., Turnidge, John, Forde, Brian M. and Beatson, Scott A. (2024). The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen.. doi: 10.1099/acmi.0.000894.v2 |
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2021 Other Outputs Reclassification of Shigella species as later heterotypic synonyms of Escherichia coli in the Genome Taxonomy DatabaseParks, Donovan H., Chuvochina, Maria, Reeves, Peter R., Beatson, Scott A. and Hugenholtz, Philip (2021). Reclassification of Shigella species as later heterotypic synonyms of Escherichia coli in the Genome Taxonomy Database. doi: 10.1101/2021.09.22.461432 |
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2021 Other Outputs MicroPIPE: An end-to-end solution for high-quality complete bacterial genome constructionMurigneux, Valentine, Roberts, Leah W., Forde, Brian M., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Irwin, Adam D., Harris, Patrick N. A., Paterson, David L., Schembri, Mark A., Whiley, David M. and Beatson, Scott A. (2021). MicroPIPE: An end-to-end solution for high-quality complete bacterial genome construction. doi: 10.1101/2021.02.02.429319 |
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2020 Other Outputs Genomic surveillance, characterisation and intervention of a carbapenem-resistant Acinetobacter baumannii outbreak in critical careRoberts, Leah W., Forde, Brian M., Hurst, Trish, Ling, Weiping, Nimmo, Graeme R., Bergh, Haakon, George, Narelle, Hajkowicz, Krispin, McNamara, John F, Lipman, Jeffrey, Permana, Budi, Schembri, Mark A., Paterson, David, Beatson, Scott A. and Harris, Patrick N. A. (2020). Genomic surveillance, characterisation and intervention of a carbapenem-resistant Acinetobacter baumannii outbreak in critical care. doi: 10.1101/2020.08.10.20166652 |
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2020 Other Outputs Strain and lineage-level methylome heterogeneity in the multi-drug resistant pathogenic Escherichia coli ST101 cloneAshcroft, Melinda M., Forde, Brian M., Phan, Minh-Duy, Peters, Kate M., Roberts, Leah W., Chan, Kok-Gan, Chong, Teik Min, Yin, Wai-Fong, Paterson, David L., Walsh, Timothy R., Schembri, Mark A. and Beatson, Scott A. (2020). Strain and lineage-level methylome heterogeneity in the multi-drug resistant pathogenic Escherichia coli ST101 clone. doi: 10.1101/2020.06.07.138552 |
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2020 Other Outputs Genomic characterisation and context of the blaNDM-1 carbapenemase in Escherichia coli ST101Ashcroft, Melinda M., Forde, Brian M., Phan, Minh-Duy, Peters, Kate M., Henderson, Andrew, Hancock, Steven J., Roberts, Leah W., White, Rhys T., Chan, Kok-Gan, Chong, Teik Min, Yin, Wai-Fong, Paterson, David L., Walsh, Timothy R., Schembri, Mark A. and Beatson, Scott A. (2020). Genomic characterisation and context of the blaNDM-1 carbapenemase in Escherichia coli ST101. doi: 10.1101/860726 |
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2019 Other Outputs A high quality reference genome for the fish pathogen Streptococcus iniaeAlsheikh-Hussain, Areej S., Zakour, Nouri L. Ben, Forde, Brian M., Silayeva, Oleksandra, Barnes, Andrew C. and Beatson, Scott A. (2019). A high quality reference genome for the fish pathogen Streptococcus iniae. doi: 10.1101/2019.12.17.880476 |
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2019 Other Outputs The evolution of nitroimidazole antibiotic resistance in Mycobacterium tuberculosisLee, Brendon M., Almeida, Deepak V., Afriat-Jurnou, Livnat, Aung, Htin Lin, Forde, Brian M., Hards, Kiel, Pidot, Sacha J., Ahmed, F. Hafna, Mohamed, A. Elaaf, Taylor, Matthew C., West, Nicholas P., Stinear, Timothy P., Greening, Chris, Beatson, Scott A., Cook, Gregory M., Nuermberger, Eric L. and Jackson, Colin J. (2019). The evolution of nitroimidazole antibiotic resistance in Mycobacterium tuberculosis. doi: 10.1101/631127 |
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2019 Other Outputs Genomic investigation reveals contaminated detergent as the source of an ESBL-producing Klebsiella michiganensis outbreak in a neonatal unitChapman, Paul, Forde, Brian M., Roberts, Leah W., Bergh, Haakon, Vesey, Debra, Jennison, Amy V., Moss, Susan, Paterson, David L., Beatson, Scott A. and Harris, Patrick N. A. (2019). Genomic investigation reveals contaminated detergent as the source of an ESBL-producing Klebsiella michiganensis outbreak in a neonatal unit. doi: 10.1101/568154 |
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2018 Other Outputs Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centreWee, Bryan A., Tai, Anna S., Sherrard, Laura J., Zakour, Nouri L. Ben, Hanks, Kirt R., Kidd, Timothy J., Ramsay, Kay A., Lamont, Iain, Whiley, David M., Bell, Scott C. and Beatson, Scott A. (2018). Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre. doi: 10.1101/261586 |
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2017 Other Outputs SMRT sequencing reveals differential patterns of methylation in two O111:H- Shiga toxigenic Escherichia coli isolates from a historic hemolytic uremic syndrome outbreak in AustraliaForde, Brian M., McAllister, Lauren J., Paton, James C., Paton, Adrienne W. and Beatson, Scott A. (2017). SMRT sequencing reveals differential patterns of methylation in two O111:H- Shiga toxigenic Escherichia coli isolates from a historic hemolytic uremic syndrome outbreak in Australia. doi: 10.1101/173336 |
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2015 Other Outputs Microbial Genomics Raw Sequence and Analysis DataBeatson, Scott A. and Stanton-Cook, Mitchell (2015). Microbial Genomics Raw Sequence and Analysis Data. The University of Queensland. (Collection) doi: 10.14264/uql.2017.106 |
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2002 Other Outputs Pseudomonas aeruginosa genomics and pathogenesisBeatson, Scott (2002). Pseudomonas aeruginosa genomics and pathogenesis. PhD Thesis, School of Molecular and Microbial Sciences, The University of Queensland. doi: 10.14264/275870 |
