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Associate Professor Timothy Wells
Associate Professor

Timothy Wells

Email: 

Overview

Background

Dr Timothy Wells joined the Frazer Institute in 2016 as a Senior Research Fellow. His research aims to find novel methods of treating multi-drug resistant bacteria, by examing the interactions between the host immune system and Gram negative bacteria. His research largely focuses on Pseudomonas aeruginosa acute and chronic infections, espeically in people living with cystic fibrosis. Dr Wells is passionate about making his research as clinically relevant as possible, with his work previously having led to novel treatment of critically ill patients. His research uses a mixture of molecular microbiology, immunology and genomic approaches.

Availability

Associate Professor Timothy Wells is:
Available for supervision
Media expert

Qualifications

  • Bachelor (Honours) of Biotechnology, The University of Queensland
  • Doctor of Philosophy, The University of Queensland

Research interests

  • Pseudomonas aeruginosa

    The T-Wells lab is interested in all infections by Pseudomonas aeruginosa whether that be chronic lung infection, wound and joint infections, acute pneumonia, UTIs and bacteremia.

  • Bacterial chronic lung infections

    The T-Wells lab is interested in bacterial infections in people with cystic fibrosis, bronchiectasis, COPD and post-lung transplant

Research impacts

Dr Wells’s original work in the field of host- pathogen interactions during chronic lung infection has led to several key insights and direct translation to the clinic.

Antibody dependent enhancement of bacterial infection: Antibodies usually protect against bacterial infection, however Dr Wells' work has identified ‘cloaking antibodies’ in patients who have Pseudomonas aeruginosa infections. Cloaking antibodies paradoxically prevent immune killing of patient's bacterial strains. Importantly, high titres of cloaking antibodies has been associated with worse lung function and patient outcomes in people with cystic fibrosis, bronchiectasis and post-lung transplant. These antibodies are also prevelant in actue Pseduomonas infections such as bacteremia.

Novel treatment of multi-drug resistant Pseudomonas aeruginosa lung infection: As cloaking antibodies (cAbs) protect bacteria from immune killing, we hypothesised that cAb removal would restore normal immune killing. Three patients with chronic P. aeruginosa infections and cAb, who had exhausted all standard treatment options have now been treated via plasmapheresis. This treatment removes all antibody, including cAbs from the patients. After treatment, P. aeruginosa was undetectable in all patients, inflammatory markers were normal and lung function increased. As these patients had strains displaying resistance to many antibiotics used clinically, this is a novel treatment method for multi-drug resistant infections.

Works

Search Professor Timothy Wells’s works on UQ eSpace

121 works between 2004 and 2025

61 - 80 of 121 works

2020

Journal Article

Evaluation of sampling methods for the study of avian respiratory microbiota

Abundo, Michael Edward C., Ngunjiri, John M., Taylor, Kara J. M., Ji, Hana, Ghorbani, Amir, Mahesh, K. C., Elaish, Mohamed, Jang, Hyesun, Weber, Bonnie, Johnson, Timothy J. and Lee, Chang-Won (2020). Evaluation of sampling methods for the study of avian respiratory microbiota. Avian Diseases, 64 (3), 277-285.

Evaluation of sampling methods for the study of avian respiratory microbiota

2020

Journal Article

Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers

Azam, Mariya, Mohsin, Mashkoor, Johnson, Timothy J., Smith, Emily A., Johnson, Abigail, Umair, Muhammad, Saleemi, Muhammad Kashif and Sajjad-ur-Rahman, (2020). Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers. Veterinary Microbiology, 247 108766, 1-7. doi: 10.1016/j.vetmic.2020.108766

Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers

2020

Journal Article

Chicken intestinal mycobiome: initial characterization and its response to bacitracin methylene disalicylate

Robinson, Kelsy, Xiao, Yingping, Johnson, Timothy J., Chen, Binlong, Yang, Qing, Lyu, Wentao, Wang, Jing, Fansler, Nicole, Becker, Sage, Liu, Jing, Yang, Hua and Zhang, Guolong (2020). Chicken intestinal mycobiome: initial characterization and its response to bacitracin methylene disalicylate. Applied and Environmental Microbiology, 86 (13) e00304-20, 1-15. doi: 10.1128/AEM.00304-20

Chicken intestinal mycobiome: initial characterization and its response to bacitracin methylene disalicylate

2020

Journal Article

Respiratory and gut microbiota in commercial turkey flocks with disparate weight gain trajectories display differential compositional dynamics

Taylor, Kara J. M., Ngunjiri, John M., Abundo, Michael C., Jang, Hyesun, Elaish, Mohamed, Ghorbani, Amir, Mahesh, K. C., Weber, Bonnie P., Johnson, Timothy J. and Lee, Chang-Won (2020). Respiratory and gut microbiota in commercial turkey flocks with disparate weight gain trajectories display differential compositional dynamics. Applied and Environmental Microbiology, 86 (12) e00431-20, 1-18. doi: 10.1128/AEM.00431-20

Respiratory and gut microbiota in commercial turkey flocks with disparate weight gain trajectories display differential compositional dynamics

2020

Journal Article

Characterization of antimicrobial resistance genes in Enterobacteriaceae carried by suburban mesocarnivores and locally owned and stray dogs

Worsley-Tonks, Katherine E. L., Miller, Elizabeth A., Gehrt, Stanley D., McKenzie, Shane C., Travis, Dominic A., Johnson, Timothy J. and Craft, Meggan E. (2020). Characterization of antimicrobial resistance genes in Enterobacteriaceae carried by suburban mesocarnivores and locally owned and stray dogs. Zoonoses and Public Health, 67 (4), 460-466. doi: 10.1111/zph.12691

Characterization of antimicrobial resistance genes in Enterobacteriaceae carried by suburban mesocarnivores and locally owned and stray dogs

2020

Journal Article

Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United States

Smith, Emily A., Miller, Elizabeth A., Weber, Bonnie P., Aguayo, Jeannette Munoz, Figueroa, Cristian Flores, Huisinga, Jared, Nezworski, Jill, Kromm, Michelle, Wileman, Ben and Johnson, Timothy J. (2020). Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United States. Applied and Environmental Microbiology, 86 (11) e02874-19, 1-9. doi: 10.1128/AEM.02874-19

Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United States

2020

Conference Publication

A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation

Divithotawela, C., Pham, A., Ledger, E. L., Hopkins, P., Tan, M., Yerkovich, S., Wells, T. J. and Chambers, D. C. (2020). A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation. 40th Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation (ISHLT), Montreal, Canada, 22-25 April 2020. New York, NY United States: Elsevier.

A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation

2020

Conference Publication

A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation

Divithotawela, C., Pham, A., Ledger, E. L., Hopkins, P., Tan, M., Yerkovich, S., Wells, T. J. and Chambers, D. C. (2020). A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation. International Society for Heart and Lung Transplantation 40th Annual Meeting and Scientific Sessions, Online, 22 - 25 April 2020. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.healun.2020.01.1265

A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation

2020

Journal Article

Prevalence and trend analysis of antimicrobial resistance in clinical Escherichia coli isolates collected from diseased pigs in the USA between 2006 and 2016

Hayer, Shivdeep Singh, Rovira, Albert, Olsen, Karen, Johnson, Timothy J., Vannucci, Fabio, Rendahl, Aaron, Perez, Andres and Alvarez, Julio (2020). Prevalence and trend analysis of antimicrobial resistance in clinical Escherichia coli isolates collected from diseased pigs in the USA between 2006 and 2016. Transboundary and Emerging Diseases, 67 (5), 1930-1941. doi: 10.1111/tbed.13528

Prevalence and trend analysis of antimicrobial resistance in clinical Escherichia coli isolates collected from diseased pigs in the USA between 2006 and 2016

2020

Journal Article

Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodies

Divithotawela, Chandima, Pham, Amy, Ledger, Emma L., Hopkins, Peter, Wells, Timothy J. and Chambers, Daniel (2020). Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodies. Journal of Heart and Lung Transplantation, 39 (1), 87-89. doi: 10.1016/j.healun.2019.10.001

Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodies

2019

Journal Article

Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathway

Benedikz, Elizabeth K., Bailey, Dalan, Cook, Charlotte N. L., Gonçalves-Carneiro, Daniel, Buckner, Michelle M. C., Blair, Jessica M. A., Wells, Timothy J., Fletcher, Nicola F., Goodall, Margaret, Flores-Langarica, Adriana, Kingsley, Robert A., Madsen, Jens, Teeling, Jessica, Johnston, Sebastian L., MacLennan, Calman A., Balfe, Peter, Henderson, Ian R., Piddock, Laura J. V., Cunningham, Adam F. and McKeating, Jane A. (2019). Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathway. Scientific Reports, 9 (1) 7903. doi: 10.1038/s41598-019-44263-7

Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathway

2019

Journal Article

Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression

Ward, Tonya L., Weber, Bonnie P., Mendoza, Kristelle M., Danzeisen, Jessica L., Llop, Katharine, Lang, Kevin, Clayton, Jonathan B., Grace, Elicia, Brannon, Jeanine, Radovic, Igor, Beauclaire, Mai, Heisel, Timothy J., Knights, Dan, Cardona, Carol, Kogut, Mike, Johnson, Casey, Noll, Sally L., Arsenault, Ryan, Reed, Kent M. and Johnson, Timothy J. (2019). Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression. mBio, 10 (5) e02171-19, 1-17. doi: 10.1128/mBio.02171-19

Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression

2019

Journal Article

Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus)

Clayton, Jonathan B., Shields-Cutler, Robin R., Hoops, Susan L., Al-Ghalith, Gabriel A., Sha, John C. M., Johnson, Timothy J. and Knights, Dan (2019). Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus). American Journal of Primatology, 81 (10-11), 1-15. doi: 10.1002/ajp.22977

Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus)

2019

Journal Article

Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in Ecuador

Salinas, Liseth, Cardenas, Paul, Johnson, Timothy J., Vasco, Karla, Graham, Jay and Trueba, Gabriel (2019). Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in Ecuador. mSphere, 4 (3) e00316-19, 1-10. doi: 10.1128/mSphere.00316-19

Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in Ecuador

2019

Journal Article

Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal group

Johnson, Timothy J., Elnekave, Ehud, Miller, Elizabeth A., Munoz-Aguayo, Jeannette, Figueroa, Cristian Flores, Johnston, Brian, Nielson, Daniel W., Logue, Catherine M. and Johnson, James R. (2019). Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal group. Antimicrobial Agents and Chemotherapy, 63 (1) e01913-18, 1-15. doi: 10.1128/AAC.01913-18

Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal group

2019

Journal Article

Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition

Fountain-Jones, Nicholas M., Clark, Nicholas J., Kinsley, Amy C., Carstensen, Michelle, Forester, James, Johnson, Timothy J., Miller, Elizabeth A., Moore, Seth, Wolf, Tiffany M. and Craft, Meggan E. (2019). Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition. Journal of Animal Ecology, 89 (3) 1365-2656.13154, 1-12. doi: 10.1111/1365-2656.13154

Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition

2019

Journal Article

Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networks

Miller, Elizabeth A., Johnson, Timothy J., Omondi, George, Atwill, Edward R., Isbell, Lynne A., McCowan, Brenda and VanderWaal, Kimberly (2019). Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networks. Applied and Environmental Microbiology, 85 (1) e02136-18, 1-15. doi: 10.1128/AEM.02136-18

Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networks

2018

Journal Article

YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium

Morris, Faye C., Wells, Timothy J., Bryant, Jack A., Schager, Anna E., Sevastsyanovich, Yanina R., Squire, Derrick J. P., Marshall, Jennifer, Isom, Georgia L., Rooke, Jessica, Maderbocus, Riyaz, Knowles, Timothy J., Overduin, Michael, Rossiter, Amanda E., Cunningham, Adam F. and Henderson, Ian R. (2018). YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium. Infection and Immunity, 86 (11) e00829-17. doi: 10.1128/IAI.00829-17

YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium

2018

Journal Article

A novel method of serum resistance by Escherichia coli that causes urosepsis

Coggon, Carrie F., Jiang, Andrew, Goh, Kelvin G. K., Henderson, Ian R., Schembri, Mark A. and Wells, Timothy J. (2018). A novel method of serum resistance by Escherichia coli that causes urosepsis. mBio, 9 (3) e00920-18, e00920-18. doi: 10.1128/mbio.00920-18

A novel method of serum resistance by Escherichia coli that causes urosepsis

2018

Journal Article

Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella

Hammarlof, Disa L., Kroger, Carsten, Owen, Sian V., Canals, Rocio, Lacharme-Lora, Lizeth, Wenner, Nicolas, Schager, Anna E., Wells, Timothy J., Henderson, Ian R., Wigley, Paul, Hokamp, Karsten, Feasey, Nicholas A., Gordon, Melita A. and Hinton, Jay C. D. (2018). Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella. Proceedings of the National Academy of Sciences of the United States of America, 115 (11), E2614-E2623. doi: 10.1073/pnas.1714718115

Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella

Funding

Current funding

  • 2026 - 2028
    Pursuing novel treatments for otitis media by investigating the impact of cloaking antibodies
    Garnett Passe and Rodney Williams Memorial Foundation Conjoint Grant
    Open grant
  • 2026 - 2029
    Treatment of Pseudomonas aeruginosa by thwarting antibody-dependent enhancement of disease
    NHMRC IDEAS Grants
    Open grant
  • 2025 - 2027
    Utilising outer membrane vesicles as vaccines and antigen discovery for Pseudomonas aeruginosa
    UQ - Sanofi Translational Science Hub Partnership Scheme
    Open grant
  • 2024 - 2026
    Counteracting cloaking antibodies to treat intractable Pseudomonas infection.
    Cystic Fibrosis Foundation USA
    Open grant

Past funding

  • 2024 - 2025
    Evaluation of plasmapheresis to treat intractable lung infections in people with cystic fibrosis
    Cystic Fibrosis Research Limited
    Open grant
  • 2023 - 2024
    Understanding and counteracting antibody-mediated inflammation driving lung damage
    Conquer Cystic Fibrosis Lung Health Transplant Grant
    Open grant
  • 2023 - 2025
    Personalising diagnosis and treatment of Pseudomonas aeruginosa infection (NHMRC Ideas Grant administered by Griffith University)
    Griffith University
    Open grant
  • 2022 - 2024
    Antibody mediated exacerbation of Pseudomonas aeruginosa infected chronic wounds (an MSH-RSS administered by MSHHS)
    Metro South Research Support Scheme Co-funded Collaboration Grant
    Open grant
  • 2021 - 2024
    Impact and treatment of cloaking antibodies in Cystic Fibrosis
    Cystic Fibrosis Foundation USA
    Open grant
  • 2019 - 2021
    Paradoxical antibody: the role of antibody in exacerbating Pseudomonas lung infection
    NHMRC Project Grant
    Open grant
  • 2017
    Determining the scope and mechanism of inhibitory antibodies in bacterial lung infections.
    UQ Early Career Researcher
    Open grant

Supervision

Availability

Associate Professor Timothy Wells is:
Available for supervision

Looking for a supervisor? Read our advice on how to choose a supervisor.

Available projects

  • Synergistic drugs to counteract cloaking antibodies

    Some patients infected with P. aeruginosa produce antibodies that, instead of fighting infection, actively protect P. aeruginosa from killing by the immune system. These ‘cloaking antibodies’ (cAb) target a lipopolysaccharide on the bacterial surface, known as O-antigen and form a physical barrier that stops the membrane attack complex (MAC) from reaching the bacterial outer membrane. Importantly, patients with cAb had greater disease severity and worse outcomes than patients with no cAb. Previous treatment for cAbs has focused on removal of the antibody, however a second attractive target is the infecting bacteria itself. We have recently investigated the bacterial requirements for the cloaking phenotype by creating strains with variable amounts and lengths of O-antigen expression. Serum bactericidal assays revealed that the serum-inhibition phenotype requires long and dense O-antigen We hypothesise that existing bacterial outer membrane modifying drugs can overcome the effect of cAbs, without cAb removal. This project will investigate potential synergistic drugs that could counteract cAbs, leading to bacterial killing.

Supervision history

Current supervision

  • Doctor Philosophy

    The role of cloaking antibodies in the pathophysiology and diagnosis of Crohn's Disease

    Principal Advisor

    Other advisors: Professor Mark Morrison

  • Doctor Philosophy

    Targeting the outer membrane of Pseudomonas aeruginosa to disrupt the action of cloaking antibodies in cystic fibrosis

    Principal Advisor

  • Master Philosophy

    Cloaking antibodies in otitis media.

    Associate Advisor

    Other advisors: Dr Diane Maresco-Pennisi

Completed supervision

Media

Enquiries

Contact Associate Professor Timothy Wells directly for media enquiries about:

  • cystic fibrosis infections
  • Pseudomonas aeruginosa

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communications@uq.edu.au