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Dr Kelvin Tuong
Dr

Kelvin Tuong

Email: 
Phone: 
+61 7 3069 7506

Overview

Background

Dr. Kelvin Tuong is a Senior Research Fellow/Group Leader at the Ian Frazer Centre for Children’s Immunotherapy Research (IFCCIR), Child Health Research Centre. He is interested in single-cell analysis of immune cells and harnessing adaptive immune receptors for understanding immune cell development and function in health and in cancer.

Dr. Tuong was born and raised in Singapore and moved to Brisbane, Australia, after completing national service in Singapore and obtaining a Diploma in Biomedical Laboratory Technology (Ngee Ann Polytechnic).

Dr. Tuong was originally trained as a molecular cell biologist and gradually transitioned into bioinformatics during his post-doctoral training. He has been very prolific for an early career researcher, having published >70 articles since 2013, with nearly a third of them as first/co-first or last author and has a stellar track record of pushing out highly collaborative work in prestigious journals including Nature, Cell, Science, Nature Medicine, Nature Biotechnology J Exp Med etc. He has the rare combination of having excellent laboratory and bioinformatics skill sets which provide him a strong command of both fundamental immunology and computational approaches.

Dr. Tuong completed his undergraduate Bachelor's degree in Biomedical science with Class I Honours, followed by his PhD in macrophage cell biology and endocrinology at UQ (Prof. Jenny Stow lab and Emiritus Prof. George Muscat lab, IMB, UQ). He then went on to a post-doc position with Emiritus Prof. Ian Frazer (co-inventor of the Gardasil cervical cancer vaccine, UQ Frazer Institute, Translational Research Institute) where he worked on HPV immunology, cervical cancer and skin cancer. In his time in the Frazer lab, he developed an interest in bioinformatics analyses as a means to tackle and understanding immunology problems in health and disease. He then moved to the UK and joined Prof. Menna Clatworthy's lab at the University of Cambridge and Dr. Sarah Teichmann's lab at the Wellcome Trust Sanger Institute. He has focused his interests on single-cell analyses of tissue immune cells, including T and B cells and their specific receptors (TCR/BCR). He has developed bespoke bioinformatics software, including one tailored for single-cell B Cell Receptor sequencing analysis, Dandelion, which he used in one of the largest combined single-cell transcriptomic, surface proteomic and TCR/BCR sequencing dataset in the world, published in Nature Medicine, and more recently in Nature Biotechnology where we introduced a TCR-based pseudotime trajectory analysis method.

Dr. Tuong is now leading the Computational Immunology group at the IFCCIR and his lab is focused on investigating how pediatric immunity is perturbed during cancer at the cellular level and how this information can be used for creating novel warning systems for children with cancer. For potential students/post-docs/trainees interested in joining the team, please contact Dr. Tuong at z.tuong@uq.edu.au.

Availability

Dr Kelvin Tuong is:
Not available for supervision
Media expert

Qualifications

  • Doctor of Philosophy, The University of Queensland

Research interests

  • Deep learning of immune repertoires

    T cells and B cells play a critical role in recognizing and eliminating cancer cells through their highly specific adaptive immune receptors. Our vision is to harness the power of these receptors to enable early cancer detection and real-time disease monitoring, particularly in children. These receptors act as natural "time-keepers" of the immune system’s engagement with tumors, capturing a molecular history of the immune response as cancer progresses. Our research focuses on understanding the properties that make these immune cells effective in the context of childhood cancers. Using high-resolution single-cell gene expression profiling, we aim to uncover how T and B cells behave in pediatric patients and how their receptors evolve during disease and treatment. To achieve this, we are developing new computational tools and algorithms designed to analyze immune receptor sequences and their expression patterns. Using deep learning, we aim to identify receptor signatures that are specific to cancer, and use these patterns to predict therapeutic responses and monitor disease progression in children with blood cancers. This approach offers a path toward highly sensitive tool for early detection and long-term monitoring of pediatric immunity and cancer.

  • Single-cell prediction of cancer cells

    We’re interested in using deep learning to make sense of single-cell RNA sequencing (scRNA-seq) data, especially to uncover copy number variations (CNVs) that are often hidden in the noise of single-cell measurements. CNVs are a key feature in many cancers, but detecting them reliably at the single-cell level is still a challenge. Rather than relying on traditional approaches that often struggle with the sparse and noisy nature of scRNA-seq, we’re exploring how deep learning models can be trained to recognize subtle patterns in gene expression that point to underlying genomic alterations. Our goal is to build tools that can separate cancer cells from normal cells based on these inferred CNVs, helping us better understand tumor composition, heterogeneity, and evolution. This work has implications not just for identifying malignant cells, but also for tracking how tumors change over time or respond to treatment. We’re also interested in combining this with other data types—like epigenomic or spatial information—to build a more complete picture of what’s happening inside tumors at the single-cell level. We approach this work from both a computational and biological perspective, and we’re motivated by the potential for these methods to contribute to more personalized and effective cancer diagnostics.

  • Paediatric Immune Cell Atlas

    We’re building the largest immune cell atlas of Australian children to date, profiling blood samples from over 1,000 healthy and disease-affected children using single-cell RNA sequencing (scRNA-seq). Our goal is to create a high-resolution map of the developing immune system in early life—a period when immune function is still maturing and highly dynamic. Children’s immune systems differ significantly from those of adults, yet they remain understudied in immunology. By analyzing immune cell populations at single-cell resolution, we’re uncovering how these cells change with age, how they respond to infections or immune-related diseases, and how early-life immunity is shaped by both genetic and environmental factors. To fully capture the complexity of the pediatric immune system, we’re incorporating machine learning and deep learning approaches to uncover subtle patterns and rare cell states across this large and diverse dataset. We’re also applying integrative methods to link scRNA-seq data with immune repertoire sequencing, enabling us to explore how T and B cell clonality and diversity contribute to immune development and disease. This work has important implications for understanding pediatric diseases, identifying early biomarkers of immune dysregulation, and designing age-specific diagnostics and therapies. In addition to its clinical relevance, the atlas will serve as a foundational reference for researchers working in pediatric immunology and systems biology.

Works

Search Professor Kelvin Tuong’s works on UQ eSpace

101 works between 2013 and 2025

61 - 80 of 101 works

2021

Journal Article

B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation

Lynall, Mary-Ellen, Kigar, Stacey L., Lehmann, Michael L., DePuyt, Allison E., Tuong, Zewen Kelvin, Listwak, Samuel J., Elkahloun, Abdel G., Bullmore, Edward T., Herkenham, Miles and Clatworthy, Menna R. (2021). B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation. Brain, Behavior, and Immunity, 97, 226-238. doi: 10.1016/j.bbi.2021.08.002

B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation

2021

Conference Publication

Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs

Suchanek, Ondrej, Ferdinand, John R., Wijeyesinghe, Sathi, Tuong, Zewen K., Clare, Simon, Rogers, Rachael Bashford, Chandra, Anita, Mahbubani, Krishnaa, Lawley, Trevor, Okkenhaug, Klaus, Masopust, David and Clatworthy, Menna R. (2021). Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs. HOBOKEN: WILEY.

Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs

2021

Conference Publication

Lyve-1 expressing macrophages direct the expansion of pericytes within the perivascular niche to support angiogenesis in cancer

Opzoomer, James W., Anstee, Joanne E., Dean, Isaac, Hill, Emily J., Bouybayoune, Ihssane, Caron, Jonathan, Muliaditan, Tamara, Gordon, Peter, Nuamah, Rosamond, Pinder, Sarah E., Ng, Tony, Dazzi, Francesco, Kordasti, Shahram, Withers, David R., Lawrence, Toby and Arnold, James N. (2021). Lyve-1 expressing macrophages direct the expansion of pericytes within the perivascular niche to support angiogenesis in cancer. Annual Meeting of the American-Association-for-Cancer-Research (AACR), Philadelphia Pa, Apr 10-May 21, 2021. PHILADELPHIA: AMER ASSOC CANCER RESEARCH.

Lyve-1 expressing macrophages direct the expansion of pericytes within the perivascular niche to support angiogenesis in cancer

2021

Journal Article

IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression

Zeng, Zhen, Veitch, Margaret, Kelly, Gabrielle A., Tuong, Zewen K., Cruz, Jazmina G., Frazer, Ian H. and Wells, James W. (2021). IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression. Cancers, 13 (9) 2131, 2131. doi: 10.3390/cancers13092131

IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression

2021

Journal Article

Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin

Zhou, Chenhao, Tuong, Zewen Kelvin, Lukowski, Samuel Wieslaw, Chandra, Janin and Frazer, Ian H. (2021). Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin. ImmunoHorizons, 5 (2), 102-116. doi: 10.4049/immunohorizons.2100006

Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin

2021

Journal Article

Manganese-doped silica-based nanoparticles promote the efficacy of antigen-specific immunotherapy

Chandra, Janin, Teoh, Siok Min, Kuo, Paula, Tolley, Lynn, Bashaw, Abate Assefa, Tuong, Zewen Kelvin, Liu, Yang, Chen, Zibin, Wells, James W., Yu, Chengzhong, Frazer, Ian H. and Yu, Meihua (2021). Manganese-doped silica-based nanoparticles promote the efficacy of antigen-specific immunotherapy. The Journal of Immunology, 206 (5), ji2000355-998. doi: 10.4049/jimmunol.2000355

Manganese-doped silica-based nanoparticles promote the efficacy of antigen-specific immunotherapy

2021

Journal Article

Single-cell multi-omics analysis of the immune response in COVID-19

Stephenson, Emily, Reynolds, Gary, Botting, Rachel A., Calero-Nieto, Fernando J., Morgan, Michael D., Tuong, Zewen Kelvin, Bach, Karsten, Sungnak, Waradon, Worlock, Kaylee B., Yoshida, Masahiro, Kumasaka, Natsuhiko, Kania, Katarzyna, Engelbert, Justin, Olabi, Bayanne, Spegarova, Jarmila Stremenova, Wilson, Nicola K., Mende, Nicole, Jardine, Laura, Gardner, Louis C. S., Goh, Issac, Horsfall, Dave, McGrath, Jim, Webb, Simone, Mather, Michael W., Lindeboom, Rik G. H., Dann, Emma, Huang, Ni, Polanski, Krzysztof, Prigmore, Elena ... Haniffa, Muzlifah (2021). Single-cell multi-omics analysis of the immune response in COVID-19. Nature Medicine, 27 (5), 904-916. doi: 10.1038/s41591-021-01329-2

Single-cell multi-omics analysis of the immune response in COVID-19

2020

Journal Article

Increased lipid metabolism impairs NK cell function and mediates adaptation to the lymphoma environment

Kobayashi, Takumi, Lam, Pui Yeng, Jiang, Hui, Bednarska, Karolina, Gloury, Renee Elyse, Murigneux, Valentine, Tay, Joshua, Jacquelot, Nicolas, Li, Rui, Tuong, Zewen Kelvin, Leggatt, Graham, Gandhi, Maher K., Hill, Michelle M, Belz, Gabrielle T., Ngo, Shyuan, Kallies, Axel and Mattarollo, Stephen R. (2020). Increased lipid metabolism impairs NK cell function and mediates adaptation to the lymphoma environment. Blood, 136 (26), 3004-3017. doi: 10.1182/blood.2020005602

Increased lipid metabolism impairs NK cell function and mediates adaptation to the lymphoma environment

2020

Journal Article

Gut-educated IgA plasma cells defend the meningeal venous sinuses

Fitzpatrick, Zachary, Frazer, Gordon, Ferro, Ashley, Clare, Simon, Bouladoux, Nicolas, Ferdinand, John, Tuong, Zewen Kelvin, Negro-Demontel, Maria Luciana, Kumar, Nitin, Suchanek, Ondrej, Tajsic, Tamara, Harcourt, Katherine, Scott, Kirsten, Bashford-Rogers, Rachel, Helmy, Adel, Reich, Daniel S, Belkaid, Yasmine, Lawley, Trevor D, McGavern, Dorian B and Clatworthy, Menna R (2020). Gut-educated IgA plasma cells defend the meningeal venous sinuses. Nature, 587 (7834), 472-476. doi: 10.1038/s41586-020-2886-4

Gut-educated IgA plasma cells defend the meningeal venous sinuses

2020

Journal Article

B lymphocyte-derived CCL7 augments neutrophil and monocyte recruitment, exacerbating acute kidney injury

Inaba, Akimichi, Tuong, Zewen K., Riding, Alexandra M., Mathews, Rebeccah J., Martin, Jack L., Saeb-Parsy, Kourosh and Clatworthy, Menna R. (2020). B lymphocyte-derived CCL7 augments neutrophil and monocyte recruitment, exacerbating acute kidney injury. Journal of Immunology, 205 (5), 1376-1384. doi: 10.4049/jimmunol.2000454

B lymphocyte-derived CCL7 augments neutrophil and monocyte recruitment, exacerbating acute kidney injury

2020

Journal Article

Organ immune responses — don’t forget the structural cells

Tuong, Zewen Kelvin and Clatworthy, Menna R. (2020). Organ immune responses — don’t forget the structural cells. Nature Reviews Nephrology, 16 (10), 570-571. doi: 10.1038/s41581-020-00334-x

Organ immune responses — don’t forget the structural cells

2020

Journal Article

GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation

Castro-Dopico, Tomas, Fleming, Aaron, Dennison, Thomas W., Ferdinand, John R., Harcourt, Katherine, Stewart, Benjamin J., Cader, Zaeem, Tuong, Zewen K., Jing, Chenzhi, Lok, Laurence S. C., Mathews, Rebeccah J., Portet, Anaïs, Kaser, Arthur, Clare, Simon and Clatworthy, Menna R. (2020). GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation. Cell Reports, 32 (1) 107857, 107857. doi: 10.1016/j.celrep.2020.107857

GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation

2020

Journal Article

Macrophage metabolic reprogramming presents a therapeutic target in lupus nephritis

Jing, Chenzhi, Castro-Dopico, Tomas, Richoz, Nathan, Tuong, Zewen K., Ferdinand, John R., Lok, Laurence S C, Loudon, Kevin W., Banham, Gemma D., Mathews, Rebeccah J., Cader, Zaeem, Fitzpatrick, Susan, Bashant, Kathleen R., Kaplan, Mariana J., Kaser, Arthur, Johnson, Randall S., Murphy, Michael P., Siegel, Richard M. and Clatworthy, Menna R. (2020). Macrophage metabolic reprogramming presents a therapeutic target in lupus nephritis. Proceedings of the National Academy of Sciences of the United States of America, 117 (26), 15160-15171. doi: 10.1073/pnas.2000943117

Macrophage metabolic reprogramming presents a therapeutic target in lupus nephritis

2020

Conference Publication

MO064 Tissue-resident b cells determine susceptibility to urinary tract infection by orchestrating macrophage polarisation

Suchanek, Ondrej, Wijeyesinghe, Sathi, Ferdinand, John, Tuong, Zewen K., Chandra, Anita, Clare, Simon, Bashford-Rogers, Rachael, Lawley, Trevor, Okkenhaug, Klaus, Masopust, David and Clatworthy, Menna (2020). MO064 Tissue-resident b cells determine susceptibility to urinary tract infection by orchestrating macrophage polarisation. 57th ERA-EDTA Congress Abstracts, Virtual, 6-9 June 2020. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/ndt/gfaa140.mo064

MO064 Tissue-resident b cells determine susceptibility to urinary tract infection by orchestrating macrophage polarisation

2019

Journal Article

HPV16 E7-driven epithelial hyperplasia promotes impaired antigen presentation and regulatory T cell development

Bashaw, Abate Assefa, Teoh, Siok M., Tuong, Zewen K., Leggatt, Graham R., Frazer, Ian H. and Chandra, Janin (2019). HPV16 E7-driven epithelial hyperplasia promotes impaired antigen presentation and regulatory T cell development. Journal of Investigative Dermatology, 139 (12), 2467-2476.e3. doi: 10.1016/j.jid.2019.03.1162

HPV16 E7-driven epithelial hyperplasia promotes impaired antigen presentation and regulatory T cell development

2019

Journal Article

Cytokine/chemokine profiles in squamous cell carcinoma correlate with precancerous and cancerous disease stage

Tuong, Zewen, Lewandowski, Andrew, Bridge, Jennifer, Gonzalez-Cruz, Jazmina, Yamada, Miko, Lambie, Duncan, Lewandowski, Richard, Steptoe, Raymond, Leggatt, Graham, Simpson, Fiona, Frazer, Ian, Soyer, Peter and Wells, James W. (2019). Cytokine/chemokine profiles in squamous cell carcinoma correlate with precancerous and cancerous disease stage. Scientific Reports, 9 (1) 17754, 17754. doi: 10.1038/s41598-019-54435-0

Cytokine/chemokine profiles in squamous cell carcinoma correlate with precancerous and cancerous disease stage

2019

Journal Article

Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions

Devitt, Katharina, Hanson, Sarah J., Tuong, Zewen K., McMeniman, Erin, Soyer, H. Peter, Frazer, Ian H. and Lukowski, Samuel W. (2019). Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions. Virology, 537, 14-19. doi: 10.1016/j.virol.2019.08.007

Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions

2019

Journal Article

Microprojection arrays applied to skin generate mechanical stress, induce an inflammatory transcriptome and cell death, and improve vaccine-induced immune responses

Ng, Hwee-Ing, Tuong, Zewen K., Fernando, Germain J. P., Depelsenaire, Alexandra C. I., Meliga, Stefano C., Frazer, Ian H. and Kendall, Mark A. F. (2019). Microprojection arrays applied to skin generate mechanical stress, induce an inflammatory transcriptome and cell death, and improve vaccine-induced immune responses. npj Vaccines, 4 (1) 41, 41. doi: 10.1038/s41541-019-0134-4

Microprojection arrays applied to skin generate mechanical stress, induce an inflammatory transcriptome and cell death, and improve vaccine-induced immune responses

2019

Journal Article

Papillomavirus immune evasion strategies target the infected cell and the local immune system

Zhou, Chenhao, Tuong, Zewen Kelvin and Frazer, Ian Hector (2019). Papillomavirus immune evasion strategies target the infected cell and the local immune system. Frontiers in Oncology, 9 682, 682. doi: 10.3389/fonc.2019.00682

Papillomavirus immune evasion strategies target the infected cell and the local immune system

2019

Journal Article

Mechanism of iron oxide-induced macrophage activation: the impact of composition and the underlying signaling pathway

Gu, Zhengying, Liu, Tianqing, Tang, Jie, Yang, Yannan, Song, Hao, Tuong, Zewen K., Fu, Jianye and Yu, Chengzhong (2019). Mechanism of iron oxide-induced macrophage activation: the impact of composition and the underlying signaling pathway. Journal of the American Chemical Society, 141 (15) jacs.8b10904, 6122-6126. doi: 10.1021/jacs.8b10904

Mechanism of iron oxide-induced macrophage activation: the impact of composition and the underlying signaling pathway

Funding

Current funding

  • 2026 - 2030
    Thwarting Rare Blood Cancer in Kids with Single-cell Innovation (TRaCKIn)
    NHMRC Investigator Grants
    Open grant
  • 2024 - 2029
    Paediatric Immune Cell Atlas for Immunotherapy Innovation (PICACHIU)
    MRFF - National Critical Infrastructure Initiative
    Open grant
  • 2024 - 2026
    A novel approach to engineer personalized vaccines to prevent cutaneous Squamous Cell Carcinoma.
    TRI Leading Innovations through New Collaborations Scheme
    Open grant
  • 2024 - 2026
    Deciphering interleukin-21 agonism in boosting CD8+ T cell mediated anti-tumour immunity to engineer next-generation immunotherapies
    Cure Cancer Early Career Research Grants
    Open grant

Past funding

  • 2017 - 2018
    Is there really a viral cause for skin cancer?
    Australasian College of Dermatologists Scientific Research Fund
    Open grant
  • 2017 - 2019
    Approaching antigen-presenting cell immunotherapy for cervical cancers using single-cell transcriptomics
    Advance Queensland Research Fellowships
    Open grant

Supervision

Availability

Dr Kelvin Tuong is:
Not available for supervision

Supervision history

Current supervision

  • Doctor Philosophy

    A Comprehensive Paediatric Immune Cell Atlas for Children's Immunotherapy Innovation

    Principal Advisor

    Other advisors: Dr Quan Nguyen, Professor Di Yu

  • Doctor Philosophy

    Advancing Paediatric Cancer Immunotherapy with Antigen Receptors and Artificial Intelligence

    Principal Advisor

    Other advisors: Dr Yang Yang

  • Doctor Philosophy

    Harnessing adaptive immune receptors to monitor paediatric immunity in cancer and enhance neoantigen vaccine pipeline

    Principal Advisor

    Other advisors: Professor Di Yu, Dr Jazmina Gonzalez Cruz

  • Doctor Philosophy

    Development of novel vaccines for cancer immunotherapy

    Associate Advisor

    Other advisors: Professor Maher Gandhi, Honorary Professor Kristen Radford

  • Doctor Philosophy

    Pipelines to model immune signalling networks in barrier tissue protection

    Associate Advisor

    Other advisors: Professor Gabrielle Belz

  • Doctor Philosophy

    Decipher interleukin-21 signaling and engineer next generation immunotherapies

    Associate Advisor

    Other advisors: Dr Zhian Chen

  • Doctor Philosophy

    Investigate T cell specificity and function in immune responses by systems immunology

    Associate Advisor

    Other advisors: Dr Yang Yang, Professor Di Yu

Completed supervision

Media

Enquiries

Contact Dr Kelvin Tuong directly for media enquiries about:

  • Cancer
  • Genomics
  • Immunology

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