
Overview
Background
Dr. Kelvin Tuong is a Senior Research Fellow/Group Leader at the Ian Frazer Centre for Children’s Immunotherapy Research (IFCCIR), Child Health Research Centre. He is interested in single-cell analysis of immune cells and harnessing adaptive immune receptors for understanding immune cell development and function in health and in cancer.
Dr. Tuong was born and raised in Singapore and moved to Brisbane, Australia, after completing national service in Singapore and obtaining a Diploma in Biomedical Laboratory Technology (Ngee Ann Polytechnic).
Dr. Tuong was originally trained as a molecular cell biologist and gradually transitioned into bioinformatics during his post-doctoral training. He has been very prolific for an early career researcher, having published >50 articles since 2013, with nearly a third of them as first/co-first or last author and has a stellar track record of pushing out highly collaborative work in prestigious journals including Nature, Cell, Science, Nature Medicine, Nature Biotechnology J Exp Med etc. He has the rare combination of having excellent laboratory and bioinformatics skill sets which provide him a strong command of both fundamental immunology and computational approaches.
Dr. Tuong completed his undergraduate Bachelor's degree in Biomedical science with Class I Honours, followed by his PhD in macrophage cell biology and endocrinology at UQ (Prof. Jenny Stow lab and Emiritus Prof. George Muscat lab, IMB, UQ). He then went on to a post-doc position with Emiritus Prof. Ian Frazer (co-inventor of the Gardasil cervical cancer vaccine, UQ Frazer Institute, Translational Research Institute) where he worked on HPV immunology, cervical cancer and skin cancer. In his time in the Frazer lab, he developed an interest in bioinformatics analyses as a means to tackle and understanding immunology problems in health and disease. He then moved to the UK and joined Prof. Menna Clatworthy's lab at the University of Cambridge and Dr. Sarah Teichmann's lab at the Wellcome Trust Sanger Institute. He has focused his interests on single-cell analyses of tissue immune cells, including T and B cells and their specific receptors (TCR/BCR). He has developed bespoke bioinformatics software, including one tailored for single-cell B Cell Receptor sequencing analysis, Dandelion, which he used in one of the largest combined single-cell transcriptomic, surface proteomic and TCR/BCR sequencing dataset in the world, published in Nature Medicine, and more recently in Nature Biotechnology where we introduced a TCR-based pseudotime trajectory analysis method.
Dr. Tuong is now leading the Computational Immunology group at the IFCCIR and his lab is focused on investigating how pediatric immunity is perturbed during cancer at the cellular level and how this information can be used for creating novel warning systems for children with cancer. For potential students/post-docs/trainees interested in joining the team, please contact Dr. Tuong at z.tuong@uq.edu.au.
Availability
- Dr Kelvin Tuong is:
- Available for supervision
Fields of research
Qualifications
- Doctor of Philosophy, The University of Queensland
Research interests
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Single-cell analysis of immune repertoires
Specialized immune cells known as T-cells and B-cells use specific receptors to recognize tumor antigens and fight cancerous cells. My vision is to harness these cells and their receptors to enable early cancer detection and disease monitoring. These specific adaptive immune receptors are essential for all aspects of the T- and B-cell’s life cycle, serving as natural ‘time-keepers’ of the immune response against cancer progression. My research team will explore the properties that define how effective these immune cells are in childhood cancer by performing high resolution gene expression profiling at the single-cell level. To achieve this, we will develop critical software and algorithms for analyzing these immune cells and their receptors. We will develop highly advanced computer models that can be used to detect adaptive immune receptors that are targeted towards cancer. These models will learn and identify cancer-specific patterns and we will apply it onto predicting and monitoring response to therapy in children with blood cancer. This will allow for a highly precise mechanism that could be deployed early for initial cancer detection and monitoring of childhood cancer progression.
Works
Search Professor Kelvin Tuong’s works on UQ eSpace
2016
Journal Article
RORα and 25-hydroxycholesterol crosstalk regulates lipid droplet homeostasis in macrophages
Tuong, Zewen Kelvin, Lau, Patrick, Du, Ximing, Condon, Nicholas D., Goode, Joel M., Oh, Tae Gyu, Yeo, Jeremy C., Muscat, George E. O. and Stow, Jennifer L. (2016). RORα and 25-hydroxycholesterol crosstalk regulates lipid droplet homeostasis in macrophages. PLoS ONE, 11 (1) e0147179, e0147179. doi: 10.1371/journal.pone.0147179
2016
Conference Publication
Altered nutrient levels caused by B cell lymphoma leads to dysfunctional natural killer cells
Kobayashi, T., Tuong, K., Man, K., Mckee, S., Leggatt, G., Kallies, A. and Mattarollo, S. (2016). Altered nutrient levels caused by B cell lymphoma leads to dysfunctional natural killer cells. ICI 2016 International Congress of Immunology, Melbourne, Australia, 21-26 August 2016. Weinheim, Germany: Wiley.
2016
Conference Publication
Pre-malignant immune suppressive environment is dependent on HPV16E7-Rb interaction induced epithelium hyperplasia
Kuo, P., Tuong, K., Mattarollo, S. and Frazer, I. (2016). Pre-malignant immune suppressive environment is dependent on HPV16E7-Rb interaction induced epithelium hyperplasia. International Congress of Immunology (ICI), Melbourne, VIC, Australia, 21-26 August 2016. Weinheim, Germany: Wiley - VCH. doi: 10.1002/eji.201670200
2016
Conference Publication
Immunotherapy for persisting viral infection and associated cancer
Frazer, I, Mattarollo, S., Leggatt, G., Wells, J., Tuong, K., Kuo, P., Jazayeri, S., Lambert, P. and Chandra, J. (2016). Immunotherapy for persisting viral infection and associated cancer. ICI 2016 International Congress of Immunology, Melbourne, Australia, 21-26 August 2016. Weinheim, Germany: Wiley.
2016
Conference Publication
Exhausted T cell signature enriched in HPV16 E7 mouse model and cervical intraepithelial neoplasia grade III
Tuong, Z. K. , Kuo, P. , Sinha, R. , Tolley, L. and Frazer, I. H. (2016). Exhausted T cell signature enriched in HPV16 E7 mouse model and cervical intraepithelial neoplasia grade III. ICI 2016 International Congress of Immunology, Melbourne, VIC, Australia, 21-26 August 2016. Weinheim, Germany: Wiley-VCH. doi: 10.1002/eji.201670200
2015
Journal Article
Ror-alpha deficiency and decreased adiposity are associated with induction of thermogenic gene expression in subcutaneous white and brown adipose tissue
Lau, Patrick, Tuong, Zewen K., Wang, Shu-Ching, Fitzsimmons, Rebecca L., Goode, Joel M., Thomas, Gethin P., Cowin, Gary J., Pearen, Michael A., Mardon, Karine, Stow, Jennifer L. and Muscat, George E. O. (2015). Ror-alpha deficiency and decreased adiposity are associated with induction of thermogenic gene expression in subcutaneous white and brown adipose tissue. American Journal of Physiology: Endocrinology and Metabolism, 308 (2), E159-E171. doi: 10.1152/ajpendo.00056.2014
2014
Conference Publication
The Orphan Nuclear Receptor Nor-1/NR4A3 Is Involved in Exercise-Dependent Signaling and Phenotypes
Pearen, Michael A., Goode, Joel M., Tuong, Kelvin Z., Fitzsimmons, Rebecca Lee, Shao, Emily and Muscat, George E. O. (2014). The Orphan Nuclear Receptor Nor-1/NR4A3 Is Involved in Exercise-Dependent Signaling and Phenotypes. WASHINGTON: ENDOCRINE SOC.
2013
Journal Article
Muscle specific Nor-1 expression regulates multiple pathways that effect adiposity, metabolism and endurance
Pearen, Michael A., Goode, Joel M., Fitzsimmons, Rebecca L., Eriksson, Natalie A., Thomas, Gethin P., Cowin, Gary J., Wang, S.-C. Mary, Tuong, Zewen K. and Muscat, George E. O. (2013). Muscle specific Nor-1 expression regulates multiple pathways that effect adiposity, metabolism and endurance. Molecular Endocrinology, 27 (11), 1897-1917. doi: 10.1210/me.2013-1205
2013
Journal Article
Disruption of Rorα1 and cholesterol 25-hydroxylase expression attenuates phagocytosis in male Rorαsg/sg mice
Tuong, Zewen K., Lau, Patrick, Yeo, Jeremy C., Pearen, Michael A., Wall, Adam A., Stanley, Amanda C., Stow, Jennifer L. and Muscat, George E. O. (2013). Disruption of Rorα1 and cholesterol 25-hydroxylase expression attenuates phagocytosis in male Rorαsg/sg mice. Endocrinology, 154 (1), 140-149. doi: 10.1210/en.2012-1889
Supervision
Availability
- Dr Kelvin Tuong is:
- Available for supervision
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Available projects
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Developing single-cell analysis methods harnessing adaptive immune receptors
The direct linkage of adaptive immune receptor repertoire with cellular phenotypes from single-cell sequencing technology has proven to be a powerful tool in understanding lymphocyte development and function in healthy and disease contexts. Multi-omics analysis leverages data from different modalities e.g. transcriptomics, epigenetics, proteomics. Recent advances has successfully integrated the data modalities to study cellular biology at an unprecedented resolution. However, unlike the other data modalities, which are largely continuous data, single-cell adaptive immune receptor sequencing (scVDJ-seq) data are a mixture of categorical and continuous data which poses additional challenges for integration. It consists of annotations of variable (V), diversity (D) and joining (J) genes, which are selected and recombined during B/T-cell development. The technology to profile this at the single cell level with paired gene expression data is relatively new. I have led the development of Dandelion, a scVDJ-seq software framework which has been used to deeply profile single-cell lymphocyte biology and I aim to expand on the its capabilities for immunology research.
Supervision history
Current supervision
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Doctor Philosophy
Advancing Paediatric Cancer Immunotherapy with Antigen Receptors and Artificial Intelligence
Principal Advisor
Other advisors: Dr Yang Yang
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Doctor Philosophy
A Comprehensive Paediatric Immune Cell Atlas for Children's Immunotherapy Innovation
Principal Advisor
Other advisors: Dr Quan Nguyen, Professor Di Yu
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Doctor Philosophy
Harnessing adaptive immune receptors to monitor paediatric immunity in cancer and enhance neoantigen vaccine pipeline
Principal Advisor
Other advisors: Professor Di Yu, Dr Jazmina Gonzalez Cruz
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Doctor Philosophy
Investigate T cell specificity and function in immune responses by systems immunology
Associate Advisor
Other advisors: Dr Yang Yang, Professor Di Yu
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Doctor Philosophy
Decipher interleukin-21 signaling and engineer next generation immunotherapies
Associate Advisor
Other advisors: Dr Zhian Chen
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Doctor Philosophy
Development of novel vaccines for cancer immunotherapy
Associate Advisor
Other advisors: Professor Maher Gandhi, Honorary Professor Kristen Radford
Completed supervision
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2022
Doctor Philosophy
Understanding CD4+ T cell responses to HPV16 E7 antigen in a mouse model of precancerous skin
Associate Advisor
Other advisors: Professor Ian Frazer, Dr Janin Chandra
Media
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